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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013978 ID=TCONS_00013978|Name=TCONS_00013978|organism=Clytia hemisphaerica|type=transcript|length=1096bpRun BLAST on NCBI protein sequence of TCONS_00013978-protein >TCONS_00013978-protein ID=TCONS_00013978-protein|Name=TCONS_00013978-protein|organism=Clytia hemisphaerica|type=polypeptide|length=246bp MSVIRSPRHIFRQLFDQESWTFTYLLACLKKREAILVDPVDTQVERDLKLRun BLAST on NCBI transcript from alignment at sc0000175:4891..148894- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00013978 ID=TCONS_00013978|Name=TCONS_00013978|organism=Clytia hemisphaerica|type=transcript|length=144004bp|location=Sequence derived from alignment at sc0000175:4891..148894- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000175:4891..148894- >TCONS_00013978 ID=TCONS_00013978|Name=TCONS_00013978|organism=Clytia hemisphaerica|type=CDS|length=6669bp|location=Sequence derived from alignment at sc0000175:4891..148894- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00013978 vs. Swiss-Prot (Human)
Match: ETHE1 (Persulfide dioxygenase ETHE1, mitochondrial OS=Homo sapiens GN=ETHE1 PE=1 SV=2) HSP 1 Score: 243.432 bits (620), Expect = 6.623e-78 Identity = 125/225 (55.56%), Postives = 163/225 (72.44%), Query Frame = 3
Query: 57 IFRQLFDQESWTFTYLLACLKKREAILVDPVDTQVERXXXXXXXXXXXXXYAINTHCHADHITGTGILKNK-TNCKSMISLNSGAKADILLNDGDRISYGDREIECISTPGHTDGCMTLVNYEERISMTGDTLLIRACGRTDFQQGDPEMLYESVHSKIFLLPEDFHLYPAHDYKGHHVTTVAEEKSLNPRLTKTKEEFVQLMKNLGLAYPKKIDEAVPWNMKCG 728
+ RQ+F+ S TFTYLL + REA+L+DPV RD +L++EL L L YA+NTHCHADHITG+G+L++ C+S+IS SGA+AD+ + DGD I +G +E ++PGHT GC+T V + ++ TGD LLIR CGRTDFQQG + LY SVH KIF LP D +YPAHDY G V+TV EE++LNPRLT + EEFV++M NL L P++ID AVP NM+CG
Sbjct: 24 LLRQMFEPVSCTFTYLLGDRESREAVLIDPVLETAPRDAQLIKELGLRLLYAVNTHCHADHITGSGLLRSLLPGCQSVISRLSGAQADLHIEDGDSIRFGRFALETRASPGHTPGCVTFVLNDHSMAFTGDALLIRGCGRTDFQQGCAKTLYHSVHEKIFTLPGDCLIYPAHDYHGFTVSTVEEERTLNPRLTLSCEEFVKIMGNLNLPKPQQIDFAVPANMRCG 248 The following BLAST results are available for this feature:
BLAST of TCONS_00013978 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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