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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013971 ID=TCONS_00013971|Name=TCONS_00013971|organism=Clytia hemisphaerica|type=transcript|length=621bp
ttttagaataaaaaaattcaaaagcacTGCAAGATGGGTTTATTCATTTA
CTGTGTTACTATGGCAACTTTGGTTGTTCAAGTAACCGCTCAACCAGATG
GACAGCCTGCCGTAAttgTGAACAGCAAGTTTGCAGTCGATGAACATAAC
AAAATCCGAAAACTGTATGACTACACCAACAACGAGTTACTCAATCAAGG
TCCATTGGCCGTTAATCTTAAATTAGCAAAAGACGCCAAAGATTGTATTG
ATTTGATGTTCCAAAACATTGAAAAACCTGAATGGCAATCTAAATATCAT
CCATGTAATCCAAGTAAAAAAAGtcaaggagaaaacattttcacATCATT
TTCATCCGCTAGACCAGATAAACTTGAAGTTAACAATGATGAAACAAAAA
CCTACGTTGGGTGGGCTATTGAAGCTTGACGATGTTATTGTCCGTTACAG
Tattagtaaaggcgggaaaagatggcggtatggcgttatggcggtatggc
gttaaaATCGGCAcgagagtttcgaagaagactggaaaactctaccgact
gtaaactcttttcgacaaaaaaaaaaccgcTCGCGAACTTttttcggctt
tgggcttatttcttagtgatt Run BLAST on NCBI protein sequence of TCONS_00013971-protein >TCONS_00013971-protein ID=TCONS_00013971-protein|Name=TCONS_00013971-protein|organism=Clytia hemisphaerica|type=polypeptide|length=131bp
MGLFIYCVTMATLVVQVTAQPDGQPAVIVNSKFAVDEHNKIRKLYDYTNN
ELLNQGPLAVNLKLAKDAKDCIDLMFQNIEKPEWQSKYHPCNPSKKSQGE
NIFTSFSSARPDKLEVNNDETKTYVGWAIEA Run BLAST on NCBI transcript from alignment at sc0000175:494221..497594+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00013971 ID=TCONS_00013971|Name=TCONS_00013971|organism=Clytia hemisphaerica|type=transcript|length=3374bp|location=Sequence derived from alignment at sc0000175:494221..497594+ (Clytia hemisphaerica)
ttttagaataaaaaaattcaaaagcacTGCAAGATGGGTTTATTCATTTA
CTGTGTTACTATGGCAACTTTGGTTGTTCAAGTAACCGCTCAACCAGATG
GACAGCCTGCCGTAAttggtaagtttttttttgttaaagcCCATCTATAC
AACCGGGGGAGAGTATATTAGAATTACAGGATGGCAGGGCGGGGGGGGGA
GGTTCCGCCCGGCTTTTGACTCTCACCCTTAGTAGaaataaaaaggagaa
aaagttggaaaaatgctcaacatttttttcataaaaatcagcCCAAATCC
CAAATCAAGATCgaataaaaaaacctttagtTTACTGTAGACTGATGATA
CGAAAGACTGAATTTAGTAAAGTTTTCATATTATGATATATATTTTGATA
TAGTTAAATCCTAACTGTGGGAGGAAGTTACATCGGGGCTATGAGCAGAG
AAATGGGATGGAATAGAAAAAGTGCTTCTTTGATTACCTGAAGTGTTCTG
ATCGTGTCTATTGAAAACtcctttgttttagctttaatttggtcgttaca
aaaagttcagaaaaaaacgGCTCGCCATGCGAAGAGGGCTGGTTTATGCT
GCGTTTATGAAAGGGGttttatgtttttcgtttttgatccattacttttt
aaactttcagtatccagtaacaaattttacactaacttgtagtctgaaaa
attctcatcacaatgataccaaattatttctaaaagatttgatagaaatt
catcaaagatagATTTTCGTGCACATTAGCTTTTAATCTAACTATGCGGT
CATGATGCCGTTATATCATTAGAATTGCtagaaaattctgagcaagaaaa
tataggtatctttaagtataaaagaggtctccccaaaatataagccccta
aAGTTTACGCATAATTTAACCTGAAACAAATAAATTTCGTCATACCACGC
taattatacaacttttttaaagcaacaacaaaagaaatccattagctcga
aacaaactcccttaagggcaaaggACCTGGTATAGACGAGCCGTTTGTCT
ATTGTTctgaagaagctgtttttccatctctttacattcctctgctatga
gacaggggtgtcttaaaataaatttcaatttataTTTGTAGTGAACAGCA
AGTTTGCAGTCGATGAACATAACAAAATCCGAAAACTGTATGACTACACC
AACAACGAGTTACTCAATCAAGGTCCATTGGCCGTTAATCTTAAATTAGC
AAAAGACGCCAAAGATTGTATTGATTTGATGTTCCAAGTAAGCTATGAAT
CTAATCCTTCATTTTTACTATCTAtggcttgaaaataatcttttgcagta
catgcttttttttttataagaatacactttataagaatgtccatgatgaa
aatgtccgaaaaattaagagtatggtaagaatatcaccattatgaaattt
agcaactgaacctaaaaataccatttttaatgcattttaacctgtaaatt
gtcaattaggatcctaacctaagaataccgtaagaatattttaggatgat
tttcgccaaaaagttaagaatatccatgatggaaTGAAAAttcaccattc
ttataaaaaaaagcgtgtagtcctACTTCCTATTCCCAAAACCcaaaaga
atatccatgatgaaatagatttacaccattcttataaaaaaagcgtattc
ttgatatgcgtaagtcaagatgacgtcatattttttaacggaagcaccca
aaaaagccggttttcgacctctgtgtttctatttttagtaaacaGGGAGA
GGTCAAACCCCggattttttcgggtgtttccgctagaaaaatgacttacg
catatcaataATAGGTCAATGGTTCTTATTAAAAACCGTGTATTCATTTA
CTAAACATAAATCTATTTTATTATTGTAGAACATTGAAAAACCTGAATGG
CAATCTAAATATCATCCATGTAATCCAAGTAAAAAAAGtcaaggagaaaa
cattttcacATCATTTTCATCCGCTAGACCAGATAAACTTGAAGTTAACA
ATGATGAAACAAAAACCTACGTTGGGTGGGCTATTGAAGCTTGGTAtata
tgtttttataaaaatttctttacaatTATCTTCTTTCATTAAGGCGGCAG
AGCAGTTGTGTGCATTtccctaggggggggggggaNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgg
ggggggtactagggatGCTGAGTATTTGCGTATGGGACCACAGACCTCTT
AGccttagagagagagagaaaattgctaaaaaagatAACCCTTAGAAAAA
CATTATCGCAAgaattaattcaaaaaaaaacttctaatactttcgttctt
ttttttttgactcgaGTTGTGAGAAACGAACCTTAAAGAGACTGTTGatt
tatttgttattttggtTACCCatagagagactttggaaggGTGAAAAACC
CAACCTTAAGGCATGCACATACCGAGTGCCCGTTACTGGCCCAATTACCC
CCTCCCAGGTCATTTCGTccataccgtattacttcgaataaaagcCCCCT
TCTtcaaacgccccctcgaataaacgccctcctaaaagaaaaatcattta
ttaaacgccccctcaaataaacgcccccttcgaataaTCACCCTTTTAGG
aacttgtgactttaatacttcaataTTAGCGTTAACtgggtttgaaaagg
aagattttagtaGTCTTGTAACCAGAtcagttttcgatgcaattttagtc
gttgaaccaaagaaattttgcactaaaattctgataaagaactaaaacaa
agggtatagttgctctaaatattcgactgtagactaaaataatttaataa
acgccctgTTCTTTTAAACGCttccctcgaataaacgcccctcctaaaat
caaaaaaattaaataaacgccaCATCCTAACTAGGCAGGTCAAATCAAGA
GGACACATGACATTGCTCTAATGCCCAAGTAATACGCGCCATCTATCAAC
ATACGAGATTCTCGCTTATCTTTGCTTTTAGACGATGTTATTGTCCGTTA
CAGTattagtaaaggcgggaaaagatggcggtatggcgttatggcggtat
ggcgttaaaATCGGCAcgagagtttcgaagaagactggaaaactctaccg
actgtaaactcttttcgacaaaaaaaaaaccgcTCGCGAACTTttttcgg
ctttgggcttatttcttagtgatt Coding sequence (CDS) from alignment at sc0000175:494221..497594+ >TCONS_00013971 ID=TCONS_00013971|Name=TCONS_00013971|organism=Clytia hemisphaerica|type=CDS|length=1584bp|location=Sequence derived from alignment at sc0000175:494221..497594+ (Clytia hemisphaerica)
ATGGGTTTATTCATTTACTGTGTTACTATGGCAACTTTGGTTGTTCAAGT
AACCGCTCAACCAGATGGACAGCCTGCCGTAAttgTGAACAGCAAGTTTG
CAGTCGATGAACATAACAAAATCCGAAAACTGTATGACTACACCAACAAC
GAGTTACTCAATCAAGGTCCATTGGCCGTTAATCTTAAATTAGCAAAAGA
CGCCAAAGATTGTATTGATTTGATGTTCCAAAACATTGAAAAACCTGAAT
GGCAATCTAAATATCATCCATGTAATCCAAGTAAAAAAAGtcaaggagaa
aacattttcacATCATTTTCATCCGCTAGACCAGATAAACTTGAAGTTAA
CAATGATGAAACAAAAACCTACGTTGGGTGGGCTATTGAAGCTTGAATGG
GTTTATTCATTTACTGTGTTACTATGGCAACTTTGGTTGTTCAAGTAACC
GCTCAACCAGATGGACAGCCTGCCGTAAttgTGAACAGCAAGTTTGCAGT
CGATGAACATAACAAAATCCGAAAACTGTATGACTACACCAACAACGAGT
TACTCAATCAAGGTCCATTGGCCGTTAATCTTAAATTAGCAAAAGACGCC
AAAGATTGTATTGATTTGATGTTCCAAAACATTGAAAAACCTGAATGGCA
ATCTAAATATCATCCATGTAATCCAAGTAAAAAAAGtcaaggagaaaaca
ttttcacATCATTTTCATCCGCTAGACCAGATAAACTTGAAGTTAACAAT
GATGAAACAAAAACCTACGTTGGGTGGGCTATTGAAGCTTGAATGGGTTT
ATTCATTTACTGTGTTACTATGGCAACTTTGGTTGTTCAAGTAACCGCTC
AACCAGATGGACAGCCTGCCGTAAttgTGAACAGCAAGTTTGCAGTCGAT
GAACATAACAAAATCCGAAAACTGTATGACTACACCAACAACGAGTTACT
CAATCAAGGTCCATTGGCCGTTAATCTTAAATTAGCAAAAGACGCCAAAG
ATTGTATTGATTTGATGTTCCAAAACATTGAAAAACCTGAATGGCAATCT
AAATATCATCCATGTAATCCAAGTAAAAAAAGtcaaggagaaaacatttt
cacATCATTTTCATCCGCTAGACCAGATAAACTTGAAGTTAACAATGATG
AAACAAAAACCTACGTTGGGTGGGCTATTGAAGCTTGAATGGGTTTATTC
ATTTACTGTGTTACTATGGCAACTTTGGTTGTTCAAGTAACCGCTCAACC
AGATGGACAGCCTGCCGTAAttgTGAACAGCAAGTTTGCAGTCGATGAAC
ATAACAAAATCCGAAAACTGTATGACTACACCAACAACGAGTTACTCAAT
CAAGGTCCATTGGCCGTTAATCTTAAATTAGCAAAAGACGCCAAAGATTG
TATTGATTTGATGTTCCAAAACATTGAAAAACCTGAATGGCAATCTAAAT
ATCATCCATGTAATCCAAGTAAAAAAAGtcaaggagaaaacattttcacA
TCATTTTCATCCGCTAGACCAGATAAACTTGAAGTTAACAATGATGAAAC
AAAAACCTACGTTGGGTGGGCTATTGAAGCTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00013971-exon-sc0000175-1491911889:494221..494338 | TCONS_00013971-exon-sc0000175-1491911889:494221..494338 | Clytia hemisphaerica | exon |
| TCONS_00013971-exon-sc0000175-1510915933:494221..494338 | TCONS_00013971-exon-sc0000175-1510915933:494221..494338 | Clytia hemisphaerica | exon |
| TCONS_00013971-exon-sc0000175-1575043694:494221..494338 | TCONS_00013971-exon-sc0000175-1575043694:494221..494338 | Clytia hemisphaerica | exon |
| TCONS_00013971-exon-sc0000175-1491911889:495362..495507 | TCONS_00013971-exon-sc0000175-1491911889:495362..495507 | Clytia hemisphaerica | exon |
| TCONS_00013971-exon-sc0000175-1510915933:495362..495507 | TCONS_00013971-exon-sc0000175-1510915933:495362..495507 | Clytia hemisphaerica | exon |
| TCONS_00013971-exon-sc0000175-1575043694:495362..495507 | TCONS_00013971-exon-sc0000175-1575043694:495362..495507 | Clytia hemisphaerica | exon |
| TCONS_00013971-exon-sc0000175-1491911889:496150..496313 | TCONS_00013971-exon-sc0000175-1491911889:496150..496313 | Clytia hemisphaerica | exon |
| TCONS_00013971-exon-sc0000175-1510915933:496150..496313 | TCONS_00013971-exon-sc0000175-1510915933:496150..496313 | Clytia hemisphaerica | exon |
| TCONS_00013971-exon-sc0000175-1575043694:496150..496313 | TCONS_00013971-exon-sc0000175-1575043694:496150..496313 | Clytia hemisphaerica | exon |
| TCONS_00013971-exon-sc0000175-1491911889:497402..497594 | TCONS_00013971-exon-sc0000175-1491911889:497402..497594 | Clytia hemisphaerica | exon |
| TCONS_00013971-exon-sc0000175-1510915933:497402..497594 | TCONS_00013971-exon-sc0000175-1510915933:497402..497594 | Clytia hemisphaerica | exon |
| TCONS_00013971-exon-sc0000175-1575043694:497402..497594 | TCONS_00013971-exon-sc0000175-1575043694:497402..497594 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000175 | supercontig | sc0000175:494221..497594 + |
Blast
The following BLAST results are available for this feature:
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