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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013969 ID=TCONS_00013969|Name=TCONS_00013969|organism=Clytia hemisphaerica|type=transcript|length=4134bpRun BLAST on NCBI protein sequence of TCONS_00013969-protein >TCONS_00013969-protein ID=TCONS_00013969-protein|Name=TCONS_00013969-protein|organism=Clytia hemisphaerica|type=polypeptide|length=582bp MASSQSSSTSTCGSPEQPSIFKNNFHHGRSFETLNVMREQRVLCDVTVRVRun BLAST on NCBI transcript from alignment at sc0000175:447995..476132+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00013969 ID=TCONS_00013969|Name=TCONS_00013969|organism=Clytia hemisphaerica|type=transcript|length=28138bp|location=Sequence derived from alignment at sc0000175:447995..476132+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000175:447995..476132+ >TCONS_00013969 ID=TCONS_00013969|Name=TCONS_00013969|organism=Clytia hemisphaerica|type=CDS|length=20988bp|location=Sequence derived from alignment at sc0000175:447995..476132+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00013969 vs. Swiss-Prot (Human)
Match: KLHL3 (Kelch-like protein 3 OS=Homo sapiens GN=KLHL3 PE=1 SV=2) HSP 1 Score: 700.279 bits (1806), Expect = 0.000e+0 Identity = 350/565 (61.95%), Postives = 432/565 (76.46%), Query Frame = 1
Query: 223 QPSIFKNNFHHGRSFETLNVMREQRVLCDVTVRVGSREILAHRSALAAASPYFYAMFTGEMSESKQNVVNIKEVDACALEQLIEYCYTAEVKVTEENVQTLLPAANLLQLPDVRNACCEFLKTQLHPTNCLGIMRFADLHSCPDLVVAARSYIEQNFTDVLSSEEFMQLDCRRVVDFISSDQLTVPSEEKVYEAVRAWVYYSRVQREQHFQELMQHVRLPLLSRDYLVDRVETEPLMKKCSVCKDFLIEAMKYHLLPRAQRLLLQTPRTKSRTP-GRPKILYVVGGQAPKAIRSVECYDIQGERWYNSTDMNLRRCRAGVAVCKGVIYAVGGFNGALRVRSVAAFDTKKNEWKGMASMEARRSTLGAAVLNDHLYSVGGFDGTTGLNTCEVYDPRNNEWQAIASMSIRRSSVGVGVLKGFLYAVGGYDGNSRQCLSSVERYDPAANVWEHVADMTVKRSGAGVGVLGDFLYAVGGHDGPLVRKSVEYYNPDTNKWTIVSDMSLARRNAGVASIXXXXXXXXXXXXSINLSTVEVYSSRTDKWDLLPSQMSTGRSYAGVVVLDKPF 1914
Q +I N H G++F+ +N +R +++LCDV + EI AHR LAA SPYF AMFTG+MSESK + IK+VD L +LI+Y YTAE++VTEENVQ LLPAA+LLQL DVR CC+FL++QLHPTNCLGI FAD+H+C DL+ A +Y EQ+F +V+ EEF+ L +V ISSD+LTV SEEKV+EAV +W+ Y + R +H +LM+HVRLPLL RDYLV VE E L+K + CKDFLIEAMKYHLLP QRLL++ PRTK RTP PK++ VVGGQAPKAIRSVECYD + +RW ++ RRCRAGV G +YAVGGFNG+LRVR+V +D K++W +ASM+ RRSTLGAAVLND LY+VGGFDG+TGL + E Y + NEW +A M+ RRSSVGVGV++G LYAVGGYDG SRQCLS+VE+Y+PA N W +VADM+ +RSGAGVGVL LYA GGHDGPLVRKSVE Y+P TN W V+DM++ RRNAGV +++GLLYVVGGDDGS NL++VE Y+ TDKW LLP+ MSTGRSYAGV V+ K
Sbjct: 23 QRTITVNPAHMGKAFKVMNELRSKQLLCDVMIVAEDVEIEAHRVVLAACSPYFCAMFTGDMSESKAKKIEIKDVDGQTLSKLIDYIYTAEIEVTEENVQVLLPAASLLQLMDVRQNCCDFLQSQLHPTNCLGIRAFADVHTCTDLLQQANAYAEQHFPEVMLGEEFLSLSLDQVCSLISSDKLTVSSEEKVFEAVISWINYEKETRLEHMAKLMEHVRLPLLPRDYLVQTVEEEALIKNNNTCKDFLIEAMKYHLLPLDQRLLIKNPRTKPRTPVSLPKVMIVVGGQAPKAIRSVECYDFEEDRWDQIAELPSRRCRAGVVFMAGHVYAVGGFNGSLRVRTVDVYDGVKDQWTSIASMQERRSTLGAAVLNDLLYAVGGFDGSTGLASVEAYSYKTNEWFFVAPMNTRRSSVGVGVVEGKLYAVGGYDGASRQCLSTVEQYNPATNEWIYVADMSTRRSGAGVGVLSGQLYATGGHDGPLVRKSVEVYDPGTNTWKQVADMNMCRRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPVTDKWTLLPTNMSTGRSYAGVAVIHKSL 587 The following BLAST results are available for this feature:
BLAST of TCONS_00013969 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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