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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013964 ID=TCONS_00013964|Name=TCONS_00013964|organism=Clytia hemisphaerica|type=transcript|length=1511bp
ATAATAGGATTTcctgttttccaaaaaaaaaaaggattggaaaCTAACAA
AAGGGATTACTGGTAAGGTACTTAAAGACAGAAAAAGTTGAATTGTGAAT
AAAGTAGAACAAAGATCGGAATAcagagaagaagaaaaagaagaaacaaa
attcATACATGATGTGGTTATTACGTTGCAGCCTTTTGGCATGGCTTGTT
GTATTTTTTATCGAAGTGCGTTTGACCAATGCAAACGATGACGCAGTTGA
CCATTATATACATAtcaaaaattttgatcacattacAAACCGAAAGATTG
GTAATACAAGAAAAATATTCCCTTATCATCATGATCACCCACATGGAGAC
AAGGTTCACGAACATGAAAACGAGGTTCACACGAAACCTGGTCACCATGA
TGACGACAAGAAAACGCGGCCACAGTTTGTCGGCCCAAAGCATTTGAGAA
GAAAGACCAATCAACATGGGCGTAAAGGATTACGTCACGGACGTCATGGG
CGAAAAGGATTACGTAATGCAGGCGAAGGATTACGACACGAACGAAAAAG
ATTACACAGATTACATCAAGTTGGTACAGAACATCACAACCAAAACAGGA
CAGGGCGCCATGGCAGAAGAGGAGGGCGTAAAGGTAAACGCCCCAACCAA
AACGGACGTCGCCAAGGACAAGAAGGGAAGCACGGACGTAGAGGTGGAAA
CAATAAAAGACAAGGAGGAAAGAATGTTTTTACAACGGTATTGGGCAAAA
AACTGAAGAGACATGCGTTGAAGTTGTTACAGAAAAGAGCGCTCTCTTCC
CAAATTGAGCCTGAGGTCGTGCCTGATCAAACAGCACCATGAAAGAGGGG
ACAGTTCGagtcaatgaagtataagcccgaagggctagaattgaatcttt
aacctttctcaattaagaaaaagtgaagccttaaaatatgcgccgtattt
ttgacgacgaaTTGAATCTAGCAACTCaacaattatttttgaaatttagc
cgTTAAATTTAGTTCCAAtccgtcatttgtgtaaaatccAGGcgggccgc
tcaaggccgcgcaactttggtaggattttgttggcttcaaatcctaccaa
ggagattcgattctagcccttcgggcttatacttcattgggacAGTTCGA
GTGCTCTCATTGTCTACCGTTGGGATTTAAATCTCGTAAAACTTTCTCAT
AAAAAGAAGAAGATGCTCGTAAAATAGACAAATAACAACATTAATTTCAT
ATTATGTTTTGTTACGGATTAATAAAAGAATAATCATAAAATCACTCTTT
ATTATAGCTTTTTATCCCTGTCTCCCTCTTATACCACCGTTGAAGTTACG
GCCTACAGATTATACACTGAAGACGGCTTTTTATAAATAAGCTGGATCAT
TTGGCGCTAAAAACTACGTCGAGTTTTTCTATTTGTAgtaaatgggctgt
tccattaaatttccatacaggcgggtggacgaaccttttaaagtcaaaaa
aagattctaga Run BLAST on NCBI transcript from alignment at sc0000175:399821..402927+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00013964 ID=TCONS_00013964|Name=TCONS_00013964|organism=Clytia hemisphaerica|type=transcript|length=3107bp|location=Sequence derived from alignment at sc0000175:399821..402927+ (Clytia hemisphaerica)
ATAATAGGATTTcctgttttccaaaaaaaaaaaggattggaaaCTAACAA
AAGGGATTACTGGTAAGGTACTTAAAGACAGAAAAAGTTGAATTGTGAAT
AAAGTAGAACAAAGATCGGAATAcagagaagaagaaaaagaagaaacaaa
attcATACATGATGTGGTTATTACGTTGCAGCCTTTTGGCATGGCTTGTT
GTATTTTTTATCGAAGTGCGTTTGACCAATGCAAACGATGACGCAGTTGA
CCATTATATACATAGTAAGttaacaaaaatattaagaTACTTTTCTAACT
GGAATAatcggccaaaatatcgtcagtggaaaattacactccaatttttg
tccccaccgaaaataatcaaataaaccatcactgcaaaatattatgctat
tttcccatcctcactgaattttctggcttgaattgaaaacaaaagaatgt
aaATCCCAAGCcagaaaaaatatggaaatattaatccccatcgagttttc
aGTCCTTAATTTTTATCTCCActagctgaaaaaatcctactgggtcaACT
TTTGAGGGGGGCTGGTAATAAATTTACAAGGAAGAGGGAATCGTTGTCCA
TGAAAATCCCAATGATTCTCAGATATTTTGACTTCATACTTTCAtggtaa
actcgaacccagGTTGCTATTTGTACTTATTTTActaccgtcgttttgta
taagtttcccatttccgcactaagattcctttgccgTTTTTCTATTGACC
AGGACTACGGTTTGTTAAAAAATTAGCCTCGGAAAGTTAGGCAAATTTGT
tgcacaagattttccgtacctttagaaacaaaccctttccaatcgCTTGC
TGGTTATCCTatgggaaaaatagcggaaagatttcggaaaagtgacaaga
atcttagtgcggggaaacttataaaaaacgcgacggtagtctgaatcgca
gacctctataggtataccttatcgggaaaaacttcgtcggggaaaagtca
cgaaattttggacaagtgacgaatattttccccgacgaaagttttccccg
gccttaatgcgtttaccaactaaccagcaagtgacgaatttttccccgac
gaaaattttccccaaagaagttttccccgataaggtacctcTTATATATA
CATCTTAATAAGGAACTCTTTTTGATAGATGACGAGCATAGAAGCATATG
CTTTCACTTAAACTAATTAAggtcaaaatcatcaaaaattttcaatttgg
ttttcagtcaaaaattttgatcacattacAAACCGAAAGATTGGTAATAC
AAGAAAAATATTCCCTTATCATCATGATCACCCACATGGAGACAAGGTTC
ACGAACATGAAAACGAGGTTCACACGAAACCTGGTCACCATGATGACGAC
AAGAAAACGCGGCCACAGTTTGTCGGCCCAAAGGTAAGGACAGTTAATCT
CGTATCCATGTATCCCAGGCATTTGAGATAAAAGAATTTTAAACATATAA
TAGACATGATAAAGATAACTTtagattgaaaagaaaattagcaacctcgt
acccagagccactagCACCACTTTTTTAATTTCACTGACAAAGGTGATGC
AACTTGTTTCAACGTCAATTTACATACATGACTTacaatttttctttgac
ttttatATCAATAGCATTTGAGAAGAAAGACCAATCAACATGGGCGTAAA
GGATTACGTCACGGACGTCATGGGCGAAAAGGATTACGTAATGCAGGCGA
AGGAATACGTAATGCAGGCGAAGGATTACGACACGGGCGTAAAGGATTAC
GTCACGGGCGTCATGGGCGAAAAGGATTACGTAATGCAGGCGAAGGAATA
CGTAATGCAGGCGAAGGATTACGACACGGGCGTAAAGGATTACGTCACGG
GCGTCATGGGCGAAAAGGATTACGTAATGCAGGCGAAGGAATACGTAATG
CAGGCGAAGGATTACGACACGGGCGTAAAGGATTACGTCACGGGCGTCAT
GGGCGAAAAGGATTACGTAATGCAGGCGAAGGAATACGTAATGCAGGCGA
AGGATTACGACACGGGCGTAAAGGATTACGTCACGGGCGTCATGGGCGAA
AAGGATTACGTAATGAAGGCGAAGGATTACGACACGAACGAAAAAGATTA
CACAGATTACATCAAGTTGGTACAGAACATCACAACCAAAACAGGACAGG
GCGCCATGGCAGAAGAGGAGGGCGTAAAGGTAAACGCCCCAACCAAAACG
GACGTCGCCAAGGACAAGAAGGGAAGCACGGACGTAGAGGTGGAAACAAT
AAAAGACAAGGAGGAAAGAATGTTTTTACAACGGTATTGGGCAAAAAACT
GAAGAGACATGCGTTGAAGTTGTTACAGAAAAGAGCGCTCTCTTCCCAAA
TTGAGCCTGAGGTCGTGCCTGATCAAACAGCACCATGAAAGAGGGGACAG
TTCGagtcaatgaagtataagcccgaagggctagaattgaatctttaacc
tttctcaattaagaaaaagtgaagccttaaaatatgcgccgtatttttga
cgacgaaTTGAATCTAGCAACTCaacaattatttttgaaatttagccgTT
AAATTTAGTTCCAAtccgtcatttgtgtaaaatccAGGcgggccgctcaa
ggccgcgcaactttggtaggattttgttggcttcaaatcctaccaaggag
attcgattctagcccttcgggcttatacttcattgggacAGTTCGAGTGC
TCTCATTGTCTACCGTTGGGATTTAAATCTCGTAAAACTTTCTCATAAAA
AGAAGAAGATGCTCGTAAAATAGACAAATAACAACATTAATTTCATATTA
TGTTTTGTTACGGATTAATAAAAGAATAATCATAAAATCACTCTTTATTA
TAGCTTTTTATCCCTGTCTCCCTCTTATACCACCGTTGAAGTTACGGCCT
ACAGATTATACACTGAAGACGGCTTTTTATAAATAAGCTGGATCATTTGG
CGCTAAAAACTACGTCGAGTTTTTCTATTTGTAgtaaatgggctgttcca
ttaaatttccatacaggcgggtggacgaaccttttaaagtcaaaaaaaga
ttctaga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00013964-exon-sc0000175-1491911889:399821..400084 | TCONS_00013964-exon-sc0000175-1491911889:399821..400084 | Clytia hemisphaerica | exon |
| TCONS_00013964-exon-sc0000175-1510915933:399821..400084 | TCONS_00013964-exon-sc0000175-1510915933:399821..400084 | Clytia hemisphaerica | exon |
| TCONS_00013964-exon-sc0000175-1575043694:399821..400084 | TCONS_00013964-exon-sc0000175-1575043694:399821..400084 | Clytia hemisphaerica | exon |
| TCONS_00013964-exon-sc0000175-1491911889:401078..401253 | TCONS_00013964-exon-sc0000175-1491911889:401078..401253 | Clytia hemisphaerica | exon |
| TCONS_00013964-exon-sc0000175-1510915933:401078..401253 | TCONS_00013964-exon-sc0000175-1510915933:401078..401253 | Clytia hemisphaerica | exon |
| TCONS_00013964-exon-sc0000175-1575043694:401078..401253 | TCONS_00013964-exon-sc0000175-1575043694:401078..401253 | Clytia hemisphaerica | exon |
| TCONS_00013964-exon-sc0000175-1491911889:401485..401566 | TCONS_00013964-exon-sc0000175-1491911889:401485..401566 | Clytia hemisphaerica | exon |
| TCONS_00013964-exon-sc0000175-1510915933:401485..401566 | TCONS_00013964-exon-sc0000175-1510915933:401485..401566 | Clytia hemisphaerica | exon |
| TCONS_00013964-exon-sc0000175-1575043694:401485..401566 | TCONS_00013964-exon-sc0000175-1575043694:401485..401566 | Clytia hemisphaerica | exon |
| TCONS_00013964-exon-sc0000175-1491911889:401939..402927 | TCONS_00013964-exon-sc0000175-1491911889:401939..402927 | Clytia hemisphaerica | exon |
| TCONS_00013964-exon-sc0000175-1510915933:401939..402927 | TCONS_00013964-exon-sc0000175-1510915933:401939..402927 | Clytia hemisphaerica | exon |
| TCONS_00013964-exon-sc0000175-1575043694:401939..402927 | TCONS_00013964-exon-sc0000175-1575043694:401939..402927 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000175 | supercontig | sc0000175:399821..402927 + |
Blast
The following BLAST results are available for this feature:
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