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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013963 ID=TCONS_00013963|Name=TCONS_00013963|organism=Clytia hemisphaerica|type=transcript|length=1896bp
gTTTACGTAATTAATAATAGGATTTcctgttttccaaaaaaaaaaaggat
tggaaaCTAACAAAAGGGATTACTGGTAAGGTACTTAAAGACAGAAAAAG
TTGAATTGTGAATAAAGTAGAACAAAGATCGGAATAcagagaagaagaaa
aagaagaaacaaaattcATACATGATGTGGTTATTACGTTGCAGCCTTTT
GGCATGGCTTGTTGTATTTTTTATCGAAGTGCGTTTGACCAATGCAAACG
ATGACGCAGTTGACCATTATATACATAtcaaaaattttgatcacattacA
AACCGAAAGATTGGTAATACAAGAAAAATATTCCCTTATCATCATGATCA
CCCACATGGAGACAAGGTTCACGAACATGAAAACGAGGTTCACACGAAAC
CTGGTCACCATGATGACGACAAGAAAACGCGGCCACAGTTTGTCGGCCCA
AAGCATTTGAGAAGAAAGACCAATCAACATGGGCGTAAAGGATTACGTCA
CGGACGTCATGGGCGAAAAGGATTACGTAATGCAGGCGAAGGAATACGTA
ATGCAGGCGAAGGATTACGACACGGGCGTAAAGGATTACGTCACGGGCGT
CATGGGCGAAAAGGATTACGTAATGCAGGCGAAGGAATACGTAATGCAGG
CGAAGGATTACGACACGGGCGTAAAGGATTACGTCACGGGCGTCATGGGC
GAAAAGGATTACGTAATGCAGGCGAAGGAATACGTAATGCAGGCGAAGGA
TTACGACACGGGCGTAAAGGATTACGTCACGGGCGTCATGGGCGAAAAGG
ATTACGTAATGCAGGCGAAGGAATACGTAATGCAGGCGAAGGATTACGAC
ACGGGCGTAAAGGATTACGTCACGGGCGTCATGGGCGAAAAGGATTACGT
AATGAAGGCGAAGGATTACGACACGAACGAAAAAGATTACACAGATTACA
TCAAGTTGGTACAGAACATCACAACCAAAACAGGACAGGGCGCCATGGCA
GAAGAGGAGGGCGTAAAGGTAAACGCCCCAACCAAAACGGACGTCGCCAA
GGACAAGAAGGGAAGCACGGACGTAGAGGTGGAAACAATAAAAGACAAGG
AGGAAAGAATGTTTTTACAACGGTATTGGGCAAAAAACTGAAGAGACATG
CGTTGAAGTTGTTACAGAAAAGAGCGCTCTCTTCCCAAATTGAGCCTGAG
GTCGTGCCTGATCAAACAGCACCATGAAAGAGGGGACAGTTCGagtcaat
gaagtataagcccgaagggctagaattgaatctttaacctttctcaatta
agaaaaagtgaagccttaaaatatgcgccgtatttttgacgacgaaTTGA
ATCTAGCAACTCaacaattatttttgaaatttagccgTTAAATTTAGTTC
CAAtccgtcatttgtgtaaaatccAGGcgggccgctcaaggccgcgcaac
tttggtaggattttgttggcttcaaatcctaccaaggagattcgattcta
gcccttcgggcttatacttcattgggacAGTTCGAGTGCTCTCATTGTCT
ACCGTTGGGATTTAAATCTCGTAAAACTTTCTCATAAAAAGAAGAAGATG
CTCGTAAAATAGACAAATAACAACATTAATTTCATATTATGTTTTGTTAC
GGATTAATAAAAGAATAATCATAAAATCACTCTTTATTATAGCTTTTTAT
CCCTGTCTCCCTCTTATACCACCGTTGAAGTTACGGCCTACAGATTATAC
ACTGAAGACGGCTTTTTATAAATAAGCTGGATCATTTGGCGCTAAAAACT
ACGTCGAGTTTTTCTATTTGTAgtaaatgggctgttccattaaatttcca
tacaggcgggtggacgaaccttttaaagtcaaaaaaagattctaga Run BLAST on NCBI transcript from alignment at sc0000175:399808..402927+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00013963 ID=TCONS_00013963|Name=TCONS_00013963|organism=Clytia hemisphaerica|type=transcript|length=3120bp|location=Sequence derived from alignment at sc0000175:399808..402927+ (Clytia hemisphaerica)
gTTTACGTAATTAATAATAGGATTTcctgttttccaaaaaaaaaaaggat
tggaaaCTAACAAAAGGGATTACTGGTAAGGTACTTAAAGACAGAAAAAG
TTGAATTGTGAATAAAGTAGAACAAAGATCGGAATAcagagaagaagaaa
aagaagaaacaaaattcATACATGATGTGGTTATTACGTTGCAGCCTTTT
GGCATGGCTTGTTGTATTTTTTATCGAAGTGCGTTTGACCAATGCAAACG
ATGACGCAGTTGACCATTATATACATAGTAAGttaacaaaaatattaaga
TACTTTTCTAACTGGAATAatcggccaaaatatcgtcagtggaaaattac
actccaatttttgtccccaccgaaaataatcaaataaaccatcactgcaa
aatattatgctattttcccatcctcactgaattttctggcttgaattgaa
aacaaaagaatgtaaATCCCAAGCcagaaaaaatatggaaatattaatcc
ccatcgagttttcaGTCCTTAATTTTTATCTCCActagctgaaaaaatcc
tactgggtcaACTTTTGAGGGGGGCTGGTAATAAATTTACAAGGAAGAGG
GAATCGTTGTCCATGAAAATCCCAATGATTCTCAGATATTTTGACTTCAT
ACTTTCAtggtaaactcgaacccagGTTGCTATTTGTACTTATTTTActa
ccgtcgttttgtataagtttcccatttccgcactaagattcctttgccgT
TTTTCTATTGACCAGGACTACGGTTTGTTAAAAAATTAGCCTCGGAAAGT
TAGGCAAATTTGTtgcacaagattttccgtacctttagaaacaaaccctt
tccaatcgCTTGCTGGTTATCCTatgggaaaaatagcggaaagatttcgg
aaaagtgacaagaatcttagtgcggggaaacttataaaaaacgcgacggt
agtctgaatcgcagacctctataggtataccttatcgggaaaaacttcgt
cggggaaaagtcacgaaattttggacaagtgacgaatattttccccgacg
aaagttttccccggccttaatgcgtttaccaactaaccagcaagtgacga
atttttccccgacgaaaattttccccaaagaagttttccccgataaggta
cctcTTATATATACATCTTAATAAGGAACTCTTTTTGATAGATGACGAGC
ATAGAAGCATATGCTTTCACTTAAACTAATTAAggtcaaaatcatcaaaa
attttcaatttggttttcagtcaaaaattttgatcacattacAAACCGAA
AGATTGGTAATACAAGAAAAATATTCCCTTATCATCATGATCACCCACAT
GGAGACAAGGTTCACGAACATGAAAACGAGGTTCACACGAAACCTGGTCA
CCATGATGACGACAAGAAAACGCGGCCACAGTTTGTCGGCCCAAAGGTAA
GGACAGTTAATCTCGTATCCATGTATCCCAGGCATTTGAGATAAAAGAAT
TTTAAACATATAATAGACATGATAAAGATAACTTtagattgaaaagaaaa
ttagcaacctcgtacccagagccactagCACCACTTTTTTAATTTCACTG
ACAAAGGTGATGCAACTTGTTTCAACGTCAATTTACATACATGACTTaca
atttttctttgacttttatATCAATAGCATTTGAGAAGAAAGACCAATCA
ACATGGGCGTAAAGGATTACGTCACGGACGTCATGGGCGAAAAGGATTAC
GTAATGCAGGCGAAGGAATACGTAATGCAGGCGAAGGATTACGACACGGG
CGTAAAGGATTACGTCACGGGCGTCATGGGCGAAAAGGATTACGTAATGC
AGGCGAAGGAATACGTAATGCAGGCGAAGGATTACGACACGGGCGTAAAG
GATTACGTCACGGGCGTCATGGGCGAAAAGGATTACGTAATGCAGGCGAA
GGAATACGTAATGCAGGCGAAGGATTACGACACGGGCGTAAAGGATTACG
TCACGGGCGTCATGGGCGAAAAGGATTACGTAATGCAGGCGAAGGAATAC
GTAATGCAGGCGAAGGATTACGACACGGGCGTAAAGGATTACGTCACGGG
CGTCATGGGCGAAAAGGATTACGTAATGAAGGCGAAGGATTACGACACGA
ACGAAAAAGATTACACAGATTACATCAAGTTGGTACAGAACATCACAACC
AAAACAGGACAGGGCGCCATGGCAGAAGAGGAGGGCGTAAAGGTAAACGC
CCCAACCAAAACGGACGTCGCCAAGGACAAGAAGGGAAGCACGGACGTAG
AGGTGGAAACAATAAAAGACAAGGAGGAAAGAATGTTTTTACAACGGTAT
TGGGCAAAAAACTGAAGAGACATGCGTTGAAGTTGTTACAGAAAAGAGCG
CTCTCTTCCCAAATTGAGCCTGAGGTCGTGCCTGATCAAACAGCACCATG
AAAGAGGGGACAGTTCGagtcaatgaagtataagcccgaagggctagaat
tgaatctttaacctttctcaattaagaaaaagtgaagccttaaaatatgc
gccgtatttttgacgacgaaTTGAATCTAGCAACTCaacaattatttttg
aaatttagccgTTAAATTTAGTTCCAAtccgtcatttgtgtaaaatccAG
Gcgggccgctcaaggccgcgcaactttggtaggattttgttggcttcaaa
tcctaccaaggagattcgattctagcccttcgggcttatacttcattggg
acAGTTCGAGTGCTCTCATTGTCTACCGTTGGGATTTAAATCTCGTAAAA
CTTTCTCATAAAAAGAAGAAGATGCTCGTAAAATAGACAAATAACAACAT
TAATTTCATATTATGTTTTGTTACGGATTAATAAAAGAATAATCATAAAA
TCACTCTTTATTATAGCTTTTTATCCCTGTCTCCCTCTTATACCACCGTT
GAAGTTACGGCCTACAGATTATACACTGAAGACGGCTTTTTATAAATAAG
CTGGATCATTTGGCGCTAAAAACTACGTCGAGTTTTTCTATTTGTAgtaa
atgggctgttccattaaatttccatacaggcgggtggacgaaccttttaa
agtcaaaaaaagattctaga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00013963-exon-sc0000175-1491911889:399808..400084 | TCONS_00013963-exon-sc0000175-1491911889:399808..400084 | Clytia hemisphaerica | exon |
| TCONS_00013963-exon-sc0000175-1510915933:399808..400084 | TCONS_00013963-exon-sc0000175-1510915933:399808..400084 | Clytia hemisphaerica | exon |
| TCONS_00013963-exon-sc0000175-1575043694:399808..400084 | TCONS_00013963-exon-sc0000175-1575043694:399808..400084 | Clytia hemisphaerica | exon |
| TCONS_00013963-exon-sc0000175-1491911889:401078..401253 | TCONS_00013963-exon-sc0000175-1491911889:401078..401253 | Clytia hemisphaerica | exon |
| TCONS_00013963-exon-sc0000175-1510915933:401078..401253 | TCONS_00013963-exon-sc0000175-1510915933:401078..401253 | Clytia hemisphaerica | exon |
| TCONS_00013963-exon-sc0000175-1575043694:401078..401253 | TCONS_00013963-exon-sc0000175-1575043694:401078..401253 | Clytia hemisphaerica | exon |
| TCONS_00013963-exon-sc0000175-1491911889:401485..402927 | TCONS_00013963-exon-sc0000175-1491911889:401485..402927 | Clytia hemisphaerica | exon |
| TCONS_00013963-exon-sc0000175-1510915933:401485..402927 | TCONS_00013963-exon-sc0000175-1510915933:401485..402927 | Clytia hemisphaerica | exon |
| TCONS_00013963-exon-sc0000175-1575043694:401485..402927 | TCONS_00013963-exon-sc0000175-1575043694:401485..402927 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000175 | supercontig | sc0000175:399808..402927 + |
Blast
The following BLAST results are available for this feature:
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