TCONS_00013962 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013962
Unique NameTCONS_00013962
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1310

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013962 ID=TCONS_00013962|Name=TCONS_00013962|organism=Clytia hemisphaerica|type=transcript|length=1310bp
tttagaaataaaacaaaaaaaacataataaacaTTATTAAAAGTACACGG
ATGGGAAATACTTTAACAAACACTTCCACATCATCGACCCACATTGATGA
GAAAATCAATACCAATTGCATAGTGGTATACTCAACCACGGTCTGTGGTT
TTTGTACCAAAGCAAAGAGACTGATGGATGAGATGGGGTTACAATATTCA
GTGGTGGAGATTGACAGATTGAGTCCATCGGAAGGAGGAGTTGTTTCACG
GAGTTTGACAGAGAAAACCAACATGAGAACTgtgCCGCAGATTTTCATCA
ACGGTAATTTGATTGGTGGCTATTCTGAACTGATAGCTCTACAACGCACT
GGGAATTTGTTACGTCGCGTTGCCGAGTGTGACGTGAATTGCTCGAAATG
ACGTTGGTTGTGAGTgacattttttggaaagattTGATTGGTTCTGGTTC
TGTATTAGTTTCATCATTTTGTTACAAGAGGTGTTTGCACGAAATCTGAT
ATAAACATACAATTTAAATAACATCCTTAGACTCGCCGCATTAAATTGGT
GAAAGTTCGCCCGTACTGTGCAATGGTATAAAAATTCGCCCGCGAGTGCG
GCTGATCCTTTTACCGTGATCCGTGACTGGATACAGTTAACTTAATTTac
atttaacattttcaaaaactttttttaacacAAAGTTGTTGGCGAGACTA
ATCATAGTTTTTAGAAAGTTCGAAATCACAAAGCTAAAAAACGGCATTAT
CGGCACTTTAAAGATTGTTCAATATCTGCAGTTTTTGAAGTTCGCATTGT
AGAATTCTTCTCAACAAATAATGGTCGACTAAAGTCATTAGGACTGAGAC
AATTTGGCTCAAATTTCTGGGCCAGTTTATAGCAggcaaaactttaaaat
attgaGGATTAATCTCAGGTGGCTAATAAAGGTCCCttcccgcttgttaa
ttttcgNTTTAAAATATTGAGGATTAACCTCAGGTGGCTAATAAAGGTCC
CttcccgcttgttaattttcgatttcttttccAACTCCCCTGCACTTTAT
TAGGACTTCTCCATTAGAAATATTTGCAAATATTGCCCCCTTATTTTATA
AGGTGTACCTGAGAGTGCCGACATATGCTTTAGTCCTGTTTGTGCCTTTT
AAGACCAAAAAATGAACGGTGCAACTATTAGTTGGCATTCATAAAAGCCT
ATttgaatttaaagaattttttaaaatataaaattgatgTATTGATatta
atttgtaaatttgaagGTTTTTACATTCTCAATAAGCTAAAAAAGTGCAT
TAAAgttatt
Run BLAST on NCBI

protein sequence of TCONS_00013962-protein

>TCONS_00013962-protein ID=TCONS_00013962-protein|Name=TCONS_00013962-protein|organism=Clytia hemisphaerica|type=polypeptide|length=116bp
MGNTLTNTSTSSTHIDEKINTNCIVVYSTTVCGFCTKAKRLMDEMGLQYS
VVEIDRLSPSEGGVVSRSLTEKTNMRTVPQIFINGNLIGGYSELIALQRT
GNLLRRVAECDVNCSK
Run BLAST on NCBI

transcript from alignment at sc0000175:384709..388129+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013962 ID=TCONS_00013962|Name=TCONS_00013962|organism=Clytia hemisphaerica|type=transcript|length=3421bp|location=Sequence derived from alignment at sc0000175:384709..388129+ (Clytia hemisphaerica)
tttagaaataaaacaaaaaaaacataataaacaTTATTAAAAGTACACGG
ATGGGAAATACTTTAACAAACACTTCCACATCATCGACCCACATTGATGA
GAAAATCAATACCAATTGCATAGTGGTATACTCAACCACGGTCTGTGGTT
TTTGTACCAAAGCAAAGAGACTGATGGATGAGATGGGGTTACAATATTCA
GTGGTGGAGATTGACAGATTGAGTCCATCGGAAGGAGGAGTTGTTTCACG
GAGTTTGACAGAGAAAACCAACATGAGAACTGTAAGTCTAAGTATGCATT
CGCTGTCATCAAGGCAAAAGGTCCAATCTGAAAATTAGTGTTTGAGGAAA
ctaagaatttttctgttttgctaaCTTTAAATTTTAAGATTGACCCTTTT
TCATGTAGATGGGATCCCCCTCACTATGAAAAAAGGGCCAAGTTCAAGAT
TTAAGGTTAGCCAAACAGAAAAATTATCGGTTTTCTCAgacactaatttt
gagattggaccttttgcCTTGATGGCAGTGAATATACCTgtcttttataa
gagcaaactacatttgactctctaattcgatctcccaggatccaaaaatt
ttattcgagttagagaaagattcgaattacagagagtaatgtATTCTAAT
TTCTAGCTGCatttgactctctctaattcgatcttccaGGATAGGGGACA
GGggactacaatcatggtcagaaTATGTTGACATTTCTGAGTATTTCggt
gtttttcagaatttaaagttcgggcgaaaatGGCAATTTCAGCCTTTTCA
CTTTATTCCATTGGATATTTTGAGTTGGGAGGGGCCTGttcatagcgtca
gcccccccttcttgttgggggggggggggNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgggggagct
aaaatctcatcacttaacatgggggctaaaataattcagcttaatagttg
gcttcaattacccaaattgaagctcatgaatctgaaaaatttttccctgc
ggcgcaatatttttataaaaagtgtgctaaatattttatcttaaacttag
aactgaaTGCAAATTAcattggaaaaaacttttttactggatcaattttt
tgaaagtgtctagggtcaaaagtcctgggggctaacaaaaaaatcacaaa
tctttggggggacttaaaactcagggggacctaatttttgcctgggacct
aaacccaggctgacgctatgctGTTGGCTTCCTCTAAGCCTTGTTGCTTG
GACGATTGTTGAGACTTTAGATCGTCAGATCATTACTTTCTATCCCTAAG
TTCGAGCACTTAAAATTCACTTGcggttttgacttttttctgggaaattc
cccttttgcCAAATATTATGGACACGATTGTagtattttagttcgaatta
cagagagattcgatattttagttcgaattacagagagattcgaacaACAA
AGATTGGAGTTGActgtatataagaacataaggcttcgatggttaAAAGA
TGAAGAAcgaatttaaaatattttaaggcCTTATATGGACCCTTGTGCAG
ATTTTGCGGATTTGGGTGGTATCCGCGAGATTAAGTCAGTGTGTATAATC
TGGCAGCAAAAAGACATAATCATGAAAATATTCTCCAGATAACGCTATCC
GCGAGATTAAGTCCCTGTggaatcttaaaattttgcgcATGAGCTCGAct
catttctttcattttccttgggattttttaaattgaaaaatagcgaaaat
gtgaaaaaagcgAAAATGAGTTCCTgcgaaaattattttccttaaGGTAG
TTCCGATAAAGAAATGAAGCCTTTTTGTTGGTTCTAATTATGGTTCTAAT
TGGTGTAGCCCCGGGTAAGTAGAAAACCTggccatatggcccgggccaga
gaggtgggccaggttttctacTTATCCCGTAACCCCTTTAGCAAGCCAAG
TATAGCTTTATTTGTTTGCATAAATTTTTACATGGCTTGAAATAACTTTC
ACTTTCTTGAGGTTGATCAcaatcttcttttttatttttcaggtgCCGCA
GATTTTCATCAACGGTAATTTGATTGGTGGCTATTCTGAACTGATAGCTC
TACAACGCACTGGGAATTTGTTACGTCGCGTTGCCGAGTGTGACGTGAAT
TGCTCGAAATGACGTTGGTTGTGAGTgacattttttggaaagattTGATT
GGTTCTGGTTCTGTATTAGTTTCATCATTTTGTTACAAGAGGTGTTTGCA
CGAAATCTGATATAAACATACAATTTAAATAACATCCTTAGACTCGCCGC
ATTAAATTGGTGAAAGTTCGCCCGTACTGTGCAATGGTATAAAAATTCGC
CCGCGAGTGCGGCTGATCCTTTTACCGTGATCCGTGACTGGATACAGTTA
ACTTAATTTacatttaacattttcaaaaactttttttaacacAAAGTTGT
TGGCGAGACTAATCATAGTTTTTAGAAAGTTCGAAATCACAAAGCTAAAA
AACGGCATTATCGGCACTTTAAAGATTGTTCAATATCTGCAGTTTTTGAA
GTTCGCATTGTAGAATTCTTCTCAACAAATAATGGTCGACTAAAGTCATT
AGGACTGAGACAATTTGGCTCAAATTTCTGGGCCAGTTTATAGCAggcaa
aactttaaaatattgaGGATTAATCTCAGGTGGCTAATAAAGGTCCCttc
ccgcttgttaattttcgNTTTAAAATATTGAGGATTAACCTCAGGTGGCT
AATAAAGGTCCCttcccgcttgttaattttcgatttcttttccAACTCCC
CTGCACTTTATTAGGACTTCTCCATTAGAAATATTTGCAAATATTGCCCC
CTTATTTTATAAGGTGTACCTGAGAGTGCCGACATATGCTTTAGTCCTGT
TTGTGCCTTTTAAGACCAAAAAATGAACGGTGCAACTATTAGTTGGCATT
CATAAAAGCCTATttgaatttaaagaattttttaaaatataaaattgatg
TATTGATattaatttgtaaatttgaagGTTTTTACATTCTCAATAAGCTA
AAAAAGTGCATTAAAgttatt

Coding sequence (CDS) from alignment at sc0000175:384709..388129+

>TCONS_00013962 ID=TCONS_00013962|Name=TCONS_00013962|organism=Clytia hemisphaerica|type=CDS|length=702bp|location=Sequence derived from alignment at sc0000175:384709..388129+ (Clytia hemisphaerica)
ATGGGAAATACTTTAACAAACACTTCCACATCATCGACCCACATTGATGA
GAAAATCAATACCAATTGCATAGTGGTATACTCAACCACGGTCTGTGGTT
TTTGTACCAAAGCAAAGAGACTGATGGATGAGATGGGGTTACAATATTCA
GTGGTGGAGATTGACAGATTGAGTCCATCGGAAGGAGGAGTTGTTTCACG
GAGTTTGACAGAGAAAACCAACATGAGAACTgtgCCGCAGATTTTCATCA
ACGGTAATTTGATTGGTGGCTATTCTGAACTGATAGCTCTACAACGCACT
GGGAATTTGTTACGTCGCGTTGCCGAGTGTGACGTGAATTGCTCGAAATG
AATGGGAAATACTTTAACAAACACTTCCACATCATCGACCCACATTGATG
AGAAAATCAATACCAATTGCATAGTGGTATACTCAACCACGGTCTGTGGT
TTTTGTACCAAAGCAAAGAGACTGATGGATGAGATGGGGTTACAATATTC
AGTGGTGGAGATTGACAGATTGAGTCCATCGGAAGGAGGAGTTGTTTCAC
GGAGTTTGACAGAGAAAACCAACATGAGAACTgtgCCGCAGATTTTCATC
AACGGTAATTTGATTGGTGGCTATTCTGAACTGATAGCTCTACAACGCAC
TGGGAATTTGTTACGTCGCGTTGCCGAGTGTGACGTGAATTGCTCGAAAT
GA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007812XLOC_007812Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013962-proteinTCONS_00013962-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013962-exon-sc0000175-1491911889:384709..384989TCONS_00013962-exon-sc0000175-1491911889:384709..384989Clytia hemisphaericaexon
TCONS_00013962-exon-sc0000175-1510915933:384709..384989TCONS_00013962-exon-sc0000175-1510915933:384709..384989Clytia hemisphaericaexon
TCONS_00013962-exon-sc0000175-1575043694:384709..384989TCONS_00013962-exon-sc0000175-1575043694:384709..384989Clytia hemisphaericaexon
TCONS_00013962-exon-sc0000175-1491911889:387101..388129TCONS_00013962-exon-sc0000175-1491911889:387101..388129Clytia hemisphaericaexon
TCONS_00013962-exon-sc0000175-1510915933:387101..388129TCONS_00013962-exon-sc0000175-1510915933:387101..388129Clytia hemisphaericaexon
TCONS_00013962-exon-sc0000175-1575043694:387101..388129TCONS_00013962-exon-sc0000175-1575043694:387101..388129Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000175supercontigsc0000175:384709..388129 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
17.6905	20.1105	34.5511	35.302	4.56275	4.22364	8.07846	8.26108	8.90647	6.02057	7.63926	7.1678	6.81494	6.89934	6.3126	6.46021	8.3213	10.4134	3.8707	3.51274	6.07527	6.83839	10.4928	9.16999	14.15	12.5359	6.62766	8.01631	6.86693	8.05305
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR014025Glutaredoxin_subgr
IPR002109Glutaredoxin
IPR012336Thioredoxin-like_fold
Vocabulary: Molecular Function
TermDefinition
GO:0015035protein disulfide oxidoreductase activity
GO:0009055electron carrier activity
Vocabulary: Biological Process
TermDefinition
GO:0045454cell redox homeostasis
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0045454 cell redox homeostasis
molecular_function GO:0009055 electron carrier activity
molecular_function GO:0015035 protein disulfide oxidoreductase activity
Blast
[Close]
BLAST of TCONS_00013962 vs. Swiss-Prot (Human)
Match: GLRX2 (Glutaredoxin-2, mitochondrial OS=Homo sapiens GN=GLRX2 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.868e-19
Identity = 43/103 (41.75%), Postives = 61/103 (59.22%), Query Frame = 3 
Query:   90 HIDEKINTNCIVVYSTTVCGFCTKAKRLMDEMGLQYSVVEIDRLSPSEGGVVSRSLTEKTNMRTVPQIFINGNLIGGYSELIALQRTGNLLRRVAECDVNCSK 398
             I E I+ NC+V++S T C +CT AK+L  +M + Y VVE+D L    G     +L + T  RTVP+IF+NG  IGG ++   L + G LL  V +C +  SK
Sbjct:   59 QIQETISDNCVVIFSKTSCSYCTMAKKLFHDMNVNYKVVELDLL--EYGNQFQDALYKMTGERTVPRIFVNGTFIGGATDTHRLHKEGKLLPLVHQCYLKKSK 159
The following BLAST results are available for this feature:
BLAST of TCONS_00013962 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GLRX22.868e-1941.75Glutaredoxin-2, mitochondrial OS=Homo sapiens GN=G... [more]
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