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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013958 ID=TCONS_00013958|Name=TCONS_00013958|organism=Clytia hemisphaerica|type=transcript|length=1010bp
CaaattcactttcgttttcagtgtgtgtgctaaaaaaaagaatgatatGG
ATGAGAAACTATTTTCAAGAAAGCATGTTTCAAAGAATAATTCAACTGTA
CGATCTGGTACAAAGACACTAAATGAATACCATATAATTGAAAAAGAAGA
GAACAGAGCCTCAAAACTACGTGAAAAAGGACTAACTGATTCAGAGATTA
GATTGAAGTTAAAGCTTGATGATGGAATTCTTAAGGAGGATGATCTCACA
TTCCTTGAAAAAGGAAAACTAATTGAAATCAAGCGTAAATTAACGGAGTA
TCAACGAAGTTTAGAAGAACCAATTCGATTCTCTGATGTTGTTGTTAATT
TTGTCTTCAGAAATTTCTGGATCGTATGATGTCAACCATGCAGTCAAAAG
AGCAAAAACTGatcTTTCTTTTGACCATCCAGTCGTTGCAACGTTACGTG
AATATGAAGAAAAAGTTAAGCTCAAGAAATTAAGAAAGTCTTACAATCTG
AACGAAGAAGATGAAGTTGAAGTTGAAGAAGAGGAAGAGAAAAAATCATC
TAACGAGACTATAGACATGGAAGACAACGACAAATCAAGCGATTTCATTG
GTCCATTACACCGACCAATCAACGAGCGTGTCCAACCCACGCCTGAACAA
CTAATATATAAGAATCGTTTAGAGCTAAACCAACTGTTGGAGATTGAGAA
ATTCAAATCATACAAAGCTGGTAATTTTGTGGATAGGCCcaaacgcgaaa
tttaatcccctcgAAAGTTTATTCCGTTAAATTACACACTCTTATTGAAA
CCCTGTTTTCCAAATGGTACATTAATGGTCGAAGGCTACATATGGTTGAA
AGCAGAGAATGCCTAGAATGGTAGATGAGAAGTACTAGAATTTCACTGGC
TTTTCCGGGACTTTTCCGCTTTTTTTCCGGTATATccggcatgagattgg
aaagatttttttctcaatgtatatatggaaaatcttttttacttACAAAA
TTGCCGAACT Run BLAST on NCBI transcript from alignment at sc0000175:279273..288356+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00013958 ID=TCONS_00013958|Name=TCONS_00013958|organism=Clytia hemisphaerica|type=transcript|length=9084bp|location=Sequence derived from alignment at sc0000175:279273..288356+ (Clytia hemisphaerica)
CaaattcactttcgttttcagtgtgtgtgctaaaaaaaagaatgatatGG
ATGAGAAACTATTTTCAAGAAAGCATGTTTCAAAGAATAATTCAACTGTA
CGATCTGGTACAAAGACACTAAATGAATACCATATAATTGAAAAAGAAGA
GAACAGAGCCTCAAAACTACGTGAAAAAGGACTAACTGATTCAGAGATTA
GATTGAAGTTAAAGCTTGATGATGGAATTCTTAAGGAGGTAGGTTGTCAA
GGTTGTACCATTCATGTAATTTCTTTTACTTACTTATCTTATATACATTG
ATACTGTCAGTTTTCTCTCAGTCAGATTGTATTACTTAAAATAAGTTTAT
CTAGCAGTCTAGTGTTGGTTACCTCATATTTCCTAGAACGCAACATTCTA
GGTctatcaaataaacaaattacTGCAACCAGGACCACCCAGGACCCCAG
AGGCTAGCACGCTCAGATGTCGCCAAATTTTTCCAGGCGTTTTTccagac
aaaaataaacagtCCAGTTCACTgtgtaattttgaattttagtatCGTAA
CTTggtctcgggtaacttaatgcatgtcccagaattgcattaatttttcc
gcccaagttccagtccctaaaccataataaactatacatttttggaagca
tatttggatgtagaataccgtattgggtgtaactttaatttttttctcag
cagaatttgagtttttttaagaaaacgtgattatgaGGTCATTATttatt
ctgggacatgcattaagttacccgaggtccaggcttcggcataagaaaaa
agaaggcgtgtgatcatcgcacgcctacgtagtaatttttagtaatttag
gcgtgCGAATTATGGCACGCCTCATTTTCTTTAGACGTGCAATCGCGTGC
gatcgtttttttcttttattttataaacatcATTAATAATGATGAGGCTG
AAACTTTTGAACAATTCCTAAGAATGATCTTTCTTTTATCTACATAAAAC
TAGACAACAGGAAAGAAGAAAGTGTATATTCAATCTtcatatttgaaaaa
caaaaacagaaaccaAAAGAGCACTGAATAATCACGAAGGAGAATACTTT
ACTTTAGGAAAACAAATGAGAAGAAGAATCATGCAGCAAAAGTAACTTTT
AAGAAGAGCTAGTTTATTGTCATAAACCAACGACCTCANNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNtggagaaagaggaaaaactcgataacccaa
atttatctggtcgccggtcgtggtcgctggtcgtggtcgccatttctggt
cgatgtttagaaactccctgcGAGAGGGaaggaaaaagatttgagagagg
aaaaatcatacagcaaaagtcattttttaaaaaggttttagagAGACGAA
AAATTGTGcagcaaaaattatttttgagaaaggcTTGTTTATTGAAGACC
AAAGCATAGTATGAGAGAAAGAGGAGAGAGAAGATGTGTATCCAttagag
taacttttttataagaaattttgtaTACATAATTATAGCAGTTTGAAAGA
GTAAAGGAAAGTTTATCTTTCATCTATTTGGTTCTTATGATTAAAGTAGA
AAAtgatatttgattttctttcaacaagcagaaaaaatatttctagaatA
AATTTTTGCATGTGCGATTGATCGCACGCCTCGCTAGGTTTTCATGATTT
ATGGCGTGTGATAAATTGCACGCCTAAAAGGCTTTTAGGCGTGTGCGGAG
GCGTGCGCGTGCGATCGCACGCCTAATATGCCGAAGCCTGgaggtctaat
gtcaacatccttcatctaattctgacacccatTAGAgctgaaaacaataa
aaatgccgaaactatttttctttgcttggtGGTCAGAAgaaaaatccttt
ttcaatcagtgattccaactttcatattattcagTTATTCTTATCACTAt
aaaagaagggtgtcgaaattagaaaagggatgttgacattaaaAACCAAC
TTACTTTATGGTATATTATGCTCTTTGTTTTAGGATGATCTCACATTCCT
TGAAAAAGGAAAACTAATTGAAATCAAGCGTAAATTAACGGAGTATCAAC
GAAGTTTAGAAGAACCAATTCGATTCTCTGATGTTGTTGTTAATTTTGTC
TTCAGAAATTTCTGGATCGTATGATGTCAACCATGCAGTCAAAAGAGCAA
AAACTGGTTTGTAATTCATACAGTGGACACTACCTATTTCTAACTTtcat
tatttgaatttttcttttatttgaactATAAAAACATTGATCCCCTCAGG
TAAAGAGTAGCGTAAAATgctctccataattcgaatctttctttagaTAG
AAGAAAGCATTTTGTCCTTTGAAGGTCTAATTAAAGAGAGGCAACATATC
GTTTTTAACCTTTTTAGCGCAACATTTTTCATCATGAAAATGCTCAACTT
GCAACTTCAAACTTACATGAAATCTTGTAACTTGAGAAATAGacgataca
cgctttttttttaataagaatacactttataagaatgtccatgatgaaaa
tggccaaaaaactaagaatatgctatgaatatcaccatcatggaattttg
ctactgaagctaagaatgccattttaagagcatttccaattataaattat
aaattatccccaagttaggctcactccttttacaaaagtgcgattttatg
cttgagacGTATGAACTAAatgttaaatctagtatgaattaggatcctaa
cctaagaatgtgctataagaatattttaggatgattttcccaaaaaggtt
aagaatatccatgatgaaatgttACCGTCAaatgctctaacttgggacga
ttggtcgaaacatgggactgttgcatatcttgtttgtattttcacttact
gtaaaatcgaaagagaaatcgtgtatttttaaatacgccgttccttaact
caaatcaaatgactttggaggctCGGTGAAATGCtagccaaattgccgtc
ccatgttttgtcagatagtcccatgttagagcagttgacggtatactttt
taaaaatgtacCCTGCTTATATATAcccttttaaatcaagtggctCTTAA
TTATAGGATATGGTATATTGGCCAATTTTGAAGGTACATACACGTCACTT
TGGTTTAAgagttaaatgaaaaaaataaagttctctaaaaaatgcaattt
cttaggaaattagTCCATAatactgaaaataagaacattttaagaacatt
ttaagaacattttaggcttaaaacctaAACTTCCAaagccttaaccctat
tcaacctaggcttttaggggcggttcagaactagggggggggggcttttc
ctgcaCCACCCCTTaatttttgatctagtgggtctttttggatgaaattt
ggcacacaagacccttgtcacgtaaggtaacttttgacaaaaaagttttt
tgatgacgtcactcatcatgcccaaagtgagcaaaaaccgaaaattgcct
ttgttcttataaatagctattgtattctaacaaaagctttagcaaaaagt
tgcctgagtttaaaatgcttattttatcctaaatattcaataaattacgg
tttaaaggatatatttgacattaagaatcaatttgtattggaaaagtgtc
aatttttttgacaccttactgtcagaaatgtcatcatgctcaaggtgtga
aaattttNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNcggcaaaagctctattatttcaggagctattaccaatag
tttgacctccgaacagaaagagcccccccccctagttcgaatagggttaa
aaagtttttgagacGATtagtttttaatgctttatttcctcattcatcaa
atttttgaattacaagctttttgacAGGAAAAACAGTGTCCGGAAAAAGA
CGAATGAAACAGATTGTTAAGTAAAATATTCAAACctcattattttaaaa
tattgagATTAGATCTTGGATTTGggcctgttttactttattttgttagt
gaattgatttgaagttttaccgcTGGGTAcctttccatcattcagtcagg
tccgcgcaggaGACTCTAAGTTATTCAACGAgctataaacgagcttctaa
ctcctttcTATAAAGTTTGaacgattttcttaaaaaacttagaaaaaaga
aCCGTGACACTTAAAGGGCTAACCTTGATTTCCAGGAAAATTTGTCTTTG
GTACCACCACCCCCTTTTACCTGGTGAGAAAAAAGGAACCTGTATCCCTA
TTTTCAATCTGGTTACCAAGATATGGACAAAATATGGATACTTCACCTGG
GAAAATGCCTTTTAATAACTAGCACTAGCAGCCAAATCCACCTCCCCAAA
ATGTAGAGAGCTAAAAGTCTGGAAAGTTTTCTGtgacatttcgatttttt
gaattaGAAAATctagaattcaaaaaatatatttctgaAAAGTAATCTGa
ttatttttcaagaattttttacaGATAATTAGGaatttttgttctgattt
tccgaAATTTGAAAATCCTTACCATTTTTACCCACCAATAACCATCAGAA
CAGAAATTCAAAACCAGGTACTAACTTGAAGTAAGTGATAGACACCCCAA
ATATAGTACCAGGCAATACTATTTTGATGGTTATTCaaaattagacacca
ccacctggcTATGGGTCAGTATCCTGCAGCTATGCCCTCCTGTATAGAAA
TCAATATACAAGGTTTGAGAATGTTTATTGATGATGTTTTCTGGACACAT
AAaatattgttaaccggttactttttcgaagccggctacacggctttttg
cgcaatgcaattggttcttttcgtaTGACGACGGGCCTATACACTGCAAA
GTTGTgtaagctcggtcgttacttgacagcaggcaatatttctcagaaaa
gccctcactaaccggtcattattgtcaGTCCAGTAGTGTGGTGGGGCGAC
AAAAAATCGGGCAAGCTGGGGAggcaatttgagaaaattttgattttggc
gccccctgctaaaaaataaataagtttgCAAAAATAACGCGAGCAAAGCA
AGCACGaaaatttttgggtttttacTCTCTTTATGTAGAAAACTGCCAAT
TAAGGTGCAAAAAAGCAAAAGGGCGNTGACTAGTTTTAaaataacgcgag
cgaagcaagCACGAAAATCAtggggtattttctctctttttggccgaaaa
ctgccatatctaagcgtgtaaaagagcaaaggcgccaaaattagtaatca
gaggcgTATTTTTTCGCCCTTTGTATTTCAGGACCCCCACCCCCCCTACC
ACCACGCTACTGATTATTGTATTAGTGTAGACTAAagtcattttgttttc
ttttcagatcTTTCTTTTGACCATCCAGTCGTTGCAACGTTACGTGAATA
TGAAGAAAAAGTTAAGCTCAAGAAATTAAGAAAGTCTTACAATCTGAACG
AAGAAGATGAAGTTGAAGTTGAAGAAGGTATCTCATTAATCTTTCTAGAG
CAGagcgcaacattttttcaaagatgtgaaaatttgaaattcaaaatttc
aaactagGATAAAAGGGCCATAAAAGCTTGTAGATTGAGagtttaagggc
tctgatcaTAGTCAGAAAGTTTATTAAgggatttgaagataaaactgttg
ttttggtttttttgacACTTAATAAAAAACTGCCTTTACAAGTTGTTTGG
TTATTCATCCTGTCAAGAGTAATTACTAGTAAGAATTTAGTTACaataat
gacgttatgaactttaaaaagacgctgataaaatgttatattaccttctt
catcaaaaagtgctaagttttaatgggcaattaacctttttgttagATTA
Accattttcaagatttcgagacaaagaagcttttacaaaaattttccgaa
aatctctttttagtttggttaaagatgaaatgttttttcttcgttgaaaa
taaggtcctcaaagGTTGAAAAACTCTTCTtcacaaaagtcttcattttt
ttcttcatcaaattttttcattatgatttttaaatcttcagattcaggaa
tagttggtccaacagaaaatgtataacatgccatagttttgttgctTACA
TCAGGCAGAAAACTATATTTtaatcagggttgctttagcttgaaaattat
gatttttgggtcgctcggacatgaagctatttgggccggacaatgtccga
tgtccgaccgttatttcgagccctgggcaaatataaaaaaaacactatGG
TCAGAGAGCCCTTAAcaatggttttggtaccatcggaaagatattttaat
actctttctaaaaatatGCGGTTTATGGCCATTGGCCAGTCTTTCTAAAA
ATATGCGGTTTATGGCCATTTAAATCAAGTGGTTAGGAGTTATAGCCTTA
AGTCTGGGACTTGCTATATTGGCAAAATTAAACCGTGTATACCGTGATTT
TTAAAGGATATAGTTTCTACCTCAAATAGTCCacacaatttgaaattaaa
atttgactttAACCTTGAAAAGACCTACGTTAAGTACGACTTGAGtagaa
aaagaaagatattttatgaaacaagaaaaaaaaaagaattttcgtatctc
tttttccaaatctctagTCTGACAAAAACTTTACGCTATctatttttaat
taaaatatcGAGTACCTTAtacattttcgaaattttgtgGTAGATTTTAC
TATCTAACACATACAATAGAagtgcaaaatttgtgtaggtgAGCAGATTT
CTTATGACacggtaattatctttttatatctaGCGACTCTCCTGTCTATA
CTACTATATTGTCCTTTTGCATAAGACTCAACTTCCTGTACTAGAATTTC
ACTGGCTTTTCCGGGACTTTTCCGCTTTTTTTCCGGTATATccggcatga
gattggaaagatttttttctcaatgtatatatggaaaatcttttttactt
ACAAAATTGCCGAACTTTCCAAAGCTCATTTTTTCACTACCCGGAGTCCC
GGACTTGGAAAGTGTCAGAGGAATCTTATTGAGGAAAGAGGAATCTTATg
caaacccagctggcacacaacgtcgtttcaacgtttatctaacgtctaca
acgtctatataacgttagatgaacgttgaaacaacgttgtgtgccagatg
GGTAAACGACGGTAGTAGCAAATGGAAATTTTCCATTAAAAACGCATGCA
CTGCGTGGTTTTGAAACGCCGGTTTGATGTGCCGTAAAAAAATGTACagc
aagatttcgaaaaaagtaCACCACAGAAAAAAGAAAGTCGTCCCAAATGC
GCTGCAAACCTGAAAGTTTTCACTTTTCCTTGTTTTAGAAAGGTGGaaga
tttctctttaaaaactctttttgtttaaccctttgaatttttttcatttg
aacaGAGGAAGAGAAAAAATCATCTAACGAGACTATAGACATGGAAGACA
ACGACAAATCAAGCGATTTCATTGGTCCATTACACCGACCAATCAACGAG
CGTGTCCAACCCACGCCTGAACAACTAATATATAAGAATCGTTTAGAGCT
AAACCAACTGTTGGAGATTGAGAAATTCAAATCATACAAAGCTGGTAATT
TTGTGGATAGGCCcaaacgcgaaatttaatcccctcgAAAGTTTATTCCG
TTAAATTACACACTCTTATTGAAACCCTGTTTTCCAAATGGTACATTAAT
GGTCGAAGGCTACATATGGTTGAAAGCAGAGAATGCCTAGAATGGTAGAT
GAGAAGTACTAGAATTTCACTGGCTTTTCCGGGACTTTTCCGCTTTTTTT
CCGGTATATccggcatgagattggaaagatttttttctcaatgtatatat
ggaaaatcttttttacttACAAAATTGCCGAACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00013958-exon-sc0000175-1491911889:279273..279510 | TCONS_00013958-exon-sc0000175-1491911889:279273..279510 | Clytia hemisphaerica | exon |
| TCONS_00013958-exon-sc0000175-1510915933:279273..279510 | TCONS_00013958-exon-sc0000175-1510915933:279273..279510 | Clytia hemisphaerica | exon |
| TCONS_00013958-exon-sc0000175-1575043694:279273..279510 | TCONS_00013958-exon-sc0000175-1575043694:279273..279510 | Clytia hemisphaerica | exon |
| TCONS_00013958-exon-sc0000175-1491911889:282356..282528 | TCONS_00013958-exon-sc0000175-1491911889:282356..282528 | Clytia hemisphaerica | exon |
| TCONS_00013958-exon-sc0000175-1510915933:282356..282528 | TCONS_00013958-exon-sc0000175-1510915933:282356..282528 | Clytia hemisphaerica | exon |
| TCONS_00013958-exon-sc0000175-1575043694:282356..282528 | TCONS_00013958-exon-sc0000175-1575043694:282356..282528 | Clytia hemisphaerica | exon |
| TCONS_00013958-exon-sc0000175-1491911889:285830..285949 | TCONS_00013958-exon-sc0000175-1491911889:285830..285949 | Clytia hemisphaerica | exon |
| TCONS_00013958-exon-sc0000175-1510915933:285830..285949 | TCONS_00013958-exon-sc0000175-1510915933:285830..285949 | Clytia hemisphaerica | exon |
| TCONS_00013958-exon-sc0000175-1575043694:285830..285949 | TCONS_00013958-exon-sc0000175-1575043694:285830..285949 | Clytia hemisphaerica | exon |
| TCONS_00013958-exon-sc0000175-1491911889:287878..288356 | TCONS_00013958-exon-sc0000175-1491911889:287878..288356 | Clytia hemisphaerica | exon |
| TCONS_00013958-exon-sc0000175-1510915933:287878..288356 | TCONS_00013958-exon-sc0000175-1510915933:287878..288356 | Clytia hemisphaerica | exon |
| TCONS_00013958-exon-sc0000175-1575043694:287878..288356 | TCONS_00013958-exon-sc0000175-1575043694:287878..288356 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000175 | supercontig | sc0000175:279273..288356 + |
Blast
The following BLAST results are available for this feature:
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