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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013956 ID=TCONS_00013956|Name=TCONS_00013956|organism=Clytia hemisphaerica|type=transcript|length=657bp
ATTTGAGAGCAAAGAGTTAAAGGCTGGTCCCTCCAAACTTTCTCTCGAAC
AACAGTACCTTGAATTTCcttaattttctaaattattgTAATATTCAGTT
TTGAAAAGAAGCTGGTTTATTTTCGCAAAGGGGtgttattttgtgttttt
cgtAATGTTCTTCGGAAGAAAATTTGAGATATATCTTAATTGAGTACACT
CGCTTGATATCAGTTTGTCAATTCTGAAAGCTGATTGGacctttttaaat
tttcgtcGTCTCagtgattggttgattgatcgAGAAGATCCTCATAGAAC
AAGCAAGAACATTTTTCACCAAAGATGACTTCAACAACAGCTTCACAAAT
GATGAAAACTGTCTCCATTACCATCGCATTGACATGTCTAATACTATCAA
CAGACATTAATGCAGCGTCCATCAACAGGAACAAAATCATCCAACATGAG
CAATGTTTATCAGTGTGTAAAACCAATTTTCTAAACTGTGGAACGAACCt
tcaagaacaatttgagTGTATGCAAAAACGAAATAAATGTTTCGATGTCT
GTGATGGGAACGACGATGATGCGAAACGTGACGTCATAACAACAGGGgag
gaagaaagtgaaagtgaattGGATTTACTTCGCACACTTTACCAAATCAA
ACGGCAG Run BLAST on NCBI protein sequence of TCONS_00013956-protein >TCONS_00013956-protein ID=TCONS_00013956-protein|Name=TCONS_00013956-protein|organism=Clytia hemisphaerica|type=polypeptide|length=111bp
MTSTTASQMMKTVSITIALTCLILSTDINAASINRNKIIQHEQCLSVCKT
NFLNCGTNLQEQFECMQKRNKCFDVCDGNDDDAKRDVITTGEEESESELD
LLRTLYQIKRQ Run BLAST on NCBI transcript from alignment at sc0000175:238157..241570+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00013956 ID=TCONS_00013956|Name=TCONS_00013956|organism=Clytia hemisphaerica|type=transcript|length=3414bp|location=Sequence derived from alignment at sc0000175:238157..241570+ (Clytia hemisphaerica)
ATTTGAGAGCAAAGAGTTAAAGGCTGGTCCCTCCAAACTTTCTCTCGAAC
AACAGTACCTTGAATTTCcttaattttctaaattattgTAATATTCAGTT
TTGAAAAGAAGCTGGTTTATTTTCGCAAAGGGGtgttattttgtgttttt
cgtAATGTTCTTCGGAAGAAAATTTGAGATATATCTTAATTGAGTACACT
CGCTTGATATCAGTTTGTCAATTCTGAAAGCTGATTGGacctttttaaat
tttcgtcGTCTCagtgattggttgattgatcgAGAAGGTGAGAAAATTCA
GATATCTTTAATATAAATTTATTTCCTAAAGCTAGAGCCCTCATTCAGTT
TTCTAACCTATCCCAGGCATGGAAATGTGAAGCCAATActtagaccttat
cggagtttttaatttttctaaaacagcgctgcattgtgggattgtttcgg
gggtattacaatagaattccatCGAGGGATTCCTGAGAGATTTCTATGTA
CCCCCGAAACAattccacaatgcatcgcttttttagaaaaatcaaaaact
ccgataagatctattattttttatctagaacGCACCTAGAACGCGgcaat
catgacgacgaatTATATCTagtggtttctttgtttttgaggaatGAATT
cttttaaatctagcgatagattttactttcagtcCAGCGTTTgcgtaaaa
accacgcgcgggtgttctggatgggaaataagtggcttcatttcccatcc
agagactctcgagtctagcccttctggcttggaagtcaatgttttaaaaa
ctttatatGCACTTATATGATTTTATAGGCTGTGCGTATCACCTCCGGAT
ATGTTTTTACATAGGAGATGCGTAACATGTATAAAATTCCCATATAAAGA
GTACGTTGTAAGCCCAGTTTAAATAATGGAATCTAATCTGGACttgaaat
aagattaaaattCTCTGCTCAGTCAATGGGTATTCAATGCCTGAATAgct
ttttgagattgaaatatttaatatagaagtcataaaatttgacataattt
atgaaaatttgacttAACCTAAACATTTATCCGCCTTTTTGGAACACGCT
GTATACAAGAAAGTTTTGTTTCTTATAGATCCTCATAGAACAAGCAAGAA
CATTTTTCACCAAAGATGACTTCAACAACAGCTTCACAAATGATGAAAAC
TGTCTCCATTACCATCGCATTGACATGTCTAATACTATCAACAGACATTA
ATGCAGCGTCCATCAACAGGAACAAAATCATCCAACATGAGCAATGTTTA
TCAGTGTGTAAAACCAATTTTCTAAACTGTGGAACGAACCttcaagaaca
atttgaggtttgttattcattttattattttcttttctttgcttacttat
tttctaaagaattttCCATCGAAATTTCTTCCTATAAGGTTATTTACTTA
TACAGGCAGGGataacttcaaattagcctatcataggctgattagcctat
cataggctatttagcctaTTTCATACAGGCTAATTAGCccataatgaaga
aaaattagatttttgagccaaaNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNCGCAtctttttttcactaaaaacaaatctta
tatgtttcaaagaacattctccacttaaaaatcttttgtgttcAGCTCCC
AGAAAagatgtatttaaaaaaaactagcTGATAGGCTAAATAACTGATaa
taggctaattttctgatcttgtaccgtgtgcaaaaaaaaaaaaaaacaaa
tttaacaAATTTTTCCGCGAAAAATGTCGAAGTTTTTATACTGCGCATGC
TCGGCGCATGCGCAgtcagaaaaaattgaatatctcctATTCTGGAGCTG
ATTAAGGGATGATATTTGGAATATACATTAATTGAGTGATTAGAGATTAA
TCTGAGGATTTATAGAATGCGACTATTAgtatttggctcaaaaatctaat
ttttcttcattatggGCTAATTAGCCTGTATGAAAtaggctaaatagcct
atgataggctaatcagctGATATTCCgagatgataggctaatttgaagct
ATCCCTGCCTGTTATATTACTACTTTATGGGAGGAAATTTGGGCAGAAAA
cttttttctcagatttttcGGATGTTGctgaaatccgcaaaattaagttt
ccgccaaaattaatcttttttttatccACCTTATTATCCAATCGCCGCAA
AATCTGAATTATTATgttcaatctcaaaatgttttttattcaggccctga
aaacaagttttttttctcatatTCAATATCGTTTTTGGGACAAAATAATC
TTCATCCGCCAACTTACTTATGACATCTCCAAAGGACCTAAATTTGTCgt
caattatgacgtcattacgtAGTTTTTccctaatttctcaaaaatgacaa
aacattttctttcattgaTTATGTTCTTACATTGATTACGATCAATGGCT
TGGTGGCAGGGGGGCAGGGGGCcaggccccccccagcggagcccttttga
gaaggggNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNGGGTAGAtagctagagaaaagggagcTTTAGGGCCCCCCCCTCG
ACTGTGGTTTCAAACTTTCTAACCTATTATGTAAAAATATTCATCTTCCA
AACCCTTTTTCAAACCTTCTTTCGGTGTATGCAAAAACGAAATACATTTT
TGATGTCTGTGATTGAAAGGATTATGAAGAAACTTCTGTGTTTTAAACAA
ATTCTTCACATTTGTTTTTTCAGTGTATGCAAAAACGAAATAAATGTTTC
GATGTCTGTGATGGGAACGACGATGATGCGAAACGTGACGTCATAACAAC
AGGGgaggaagaaagtgaaagtgaattGGATTTACTTCGCACACTTTACC
AAATCAAACGGCAG Coding sequence (CDS) from alignment at sc0000175:238157..241570+ >TCONS_00013956 ID=TCONS_00013956|Name=TCONS_00013956|organism=Clytia hemisphaerica|type=CDS|length=666bp|location=Sequence derived from alignment at sc0000175:238157..241570+ (Clytia hemisphaerica)
ATGACTTCAACAACAGCTTCACAAATGATGAAAACTGTCTCCATTACCAT
CGCATTGACATGTCTAATACTATCAACAGACATTAATGCAGCGTCCATCA
ACAGGAACAAAATCATCCAACATGAGCAATGTTTATCAGTGTGTAAAACC
AATTTTCTAAACTGTGGAACGAACCttcaagaacaatttgagTGTATGCA
AAAACGAAATAAATGTTTCGATGTCTGTGATGGGAACGACGATGATGCGA
AACGTGACGTCATAACAACAGGGgaggaagaaagtgaaagtgaattGGAT
TTACTTCGCACACTTTACCAAATCAAACGGCAGATGACTTCAACAACAGC
TTCACAAATGATGAAAACTGTCTCCATTACCATCGCATTGACATGTCTAA
TACTATCAACAGACATTAATGCAGCGTCCATCAACAGGAACAAAATCATC
CAACATGAGCAATGTTTATCAGTGTGTAAAACCAATTTTCTAAACTGTGG
AACGAACCttcaagaacaatttgagTGTATGCAAAAACGAAATAAATGTT
TCGATGTCTGTGATGGGAACGACGATGATGCGAAACGTGACGTCATAACA
ACAGGGgaggaagaaagtgaaagtgaattGGATTTACTTCGCACACTTTA
CCAAATCAAACGGCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00013956-exon-sc0000175-1491911889:238157..238443 | TCONS_00013956-exon-sc0000175-1491911889:238157..238443 | Clytia hemisphaerica | exon |
| TCONS_00013956-exon-sc0000175-1510915933:238157..238443 | TCONS_00013956-exon-sc0000175-1510915933:238157..238443 | Clytia hemisphaerica | exon |
| TCONS_00013956-exon-sc0000175-1575043694:238157..238443 | TCONS_00013956-exon-sc0000175-1575043694:238157..238443 | Clytia hemisphaerica | exon |
| TCONS_00013956-exon-sc0000175-1491911889:239285..239513 | TCONS_00013956-exon-sc0000175-1491911889:239285..239513 | Clytia hemisphaerica | exon |
| TCONS_00013956-exon-sc0000175-1510915933:239285..239513 | TCONS_00013956-exon-sc0000175-1510915933:239285..239513 | Clytia hemisphaerica | exon |
| TCONS_00013956-exon-sc0000175-1575043694:239285..239513 | TCONS_00013956-exon-sc0000175-1575043694:239285..239513 | Clytia hemisphaerica | exon |
| TCONS_00013956-exon-sc0000175-1491911889:241430..241570 | TCONS_00013956-exon-sc0000175-1491911889:241430..241570 | Clytia hemisphaerica | exon |
| TCONS_00013956-exon-sc0000175-1510915933:241430..241570 | TCONS_00013956-exon-sc0000175-1510915933:241430..241570 | Clytia hemisphaerica | exon |
| TCONS_00013956-exon-sc0000175-1575043694:241430..241570 | TCONS_00013956-exon-sc0000175-1575043694:241430..241570 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000175 | supercontig | sc0000175:238157..241570 + |
Blast
The following BLAST results are available for this feature:
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