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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013928 ID=TCONS_00013928|Name=TCONS_00013928|organism=Clytia hemisphaerica|type=transcript|length=2425bp
GAAATTGGAAAGAAGCTTACAAAAGGTAGTCACAGGCCAAAGAAACAACA
ACATGGCTTGGCAATTCTTCATCCTATTGCTTTTTGCAACCATAAACCAC
TCAAAAAGTTATAGCTGCGAGTCAGATTGCAAAGCTTCCTATGCAGCAGT
AATAGAGAAGGTAACAGATGAAACAACCAGCACTGAAATGATTCGAAAGG
TGAAAGAGAGAGGTGACAAGCATTGTGCCCTTTTTTGTGATCTCCCTCGA
TGGTATCGTGATAGTTGTCAAAAGAATTGCCAGGGAAATGCAAATTATTA
CCAATGTTTTTCCGATTGTGCATCCAATCACTCTCGATATGTTTCAGAAG
AGATTGAGATCCCAGAACCTGAACCTCAAGTgtttttcaatgttcattgt
TATGATGAATATATTACTGTTGAGGAAACATTTTCATGGGGTTCCATTAG
TTTTATAACACCTACCGTCAAATGTGAGATTGTACAATAGACAAAAACTA
GGAACTAATCACCTAGAAAATGACATCGCTTATTTGATTTAAGTTAACGC
CCATGGTACATacgcttttttaataagaatggtGTCATCATTGATATTTT
CTAGTGTTTTAgcaaaatcatcctgaaattttcttacggtattcttaggt
taggatccaaaGTTAACCTTGAATAAAGCATGTATAATCCATACCTGAAC
CAAAAAATGGCAATTTTGTGAACGTtataaaaatgctctaaaagtgacat
tcttaggttcagttgctaaaatCAGAGATTTTATGTTGCCTAATttaatc
atgaatattcttatagagtacattcttataaaaaaggcgtATACCGTAAT
TGGCATATTTTGGGGTATTCAATTTGTCGGTTTGGGATATAATCATAAAT
CTATCTAATTTATCGAAATCTTTTCGAAGAAGGACAGTACGATCAGgtta
atcacgacgacggacgaaaaatgtaataggctagtgaaaatacgaaattt
gattggttgaaactcactagcctgttaaattttcgttcgtcgtcgtgatt
ttaccgatttaatTAACTTCACTAATACTTCGACTATAGACcatatcgga
gtttttgatttttctaaaaaaagctaTGCATGGGactgtttcgagtgtat
taccaTGAACATacaaacgactggacatctatcttttattgtctctttga
agcgattttttcacaagtttgcaatatattttatcaacatttttcaactc
tgaaatgcagaatttcaactgcgtatatacttttgaatctcttttgtcac
tccaatgatttttttatggcttgaaaaaaataacttgccaaagttgagag
cctgtgttataagaatatcaaaattagaatgtgacactctctaaaattat
tcgacacttttaagtcaaaatttagaaatattagtcggagttttgacaag
ctgacaatgattttgcctctgttatttttgttttaatatgGATAAAAGAC
GCGAGAGGAGTAGAGCAACAGAGTCTATTGTCGAatttttgacgttgtta
gcaaggtattctcaagtggtatatcatcaaaatttattgtttcattttat
gcttttaacgaggcggcaacgaagtagcagccctttctacaaaaaaacAA
CGGAGATGGAtgcccagtcgtttatacagggtgtccctaataaaagtatc
gagtttgaacatgcgattgagtaaaaaagtttgtgtgtgttatcgctaaa
atataagaacgttctccatcacataggctcattacattattgttacgtaa
tgacaaagaaaaaagagggagagcttaaaatacaattttgtgaatacaca
cttgaaactttctactcaatcgcatgttcaaactcgatacttttattagg
gacaccctgtatatccATGGTATTACAACAGAATttcctcgaggaattcc
taagatatttctattgtaatacactcgaaacaatcacacaatgcatcgct
tttttagaaaaatcgaaaataccGCTAAGGCCTATTAGAAATAATTAACA
TTTTTAATGGTCATACTTCACATTTCAAATTTACACTCTCTTGCATTTAG
TAAAATCATATAATATAGTGGAAAATGAATATAAGTCTTTCCAAAATCAC
CTATAAATTTAAAATCGAAAACAAAAGTAGTGAGAGATTTTGAATCTTAA
TTTTGATCAACTGGCGAAACGTAGATTGTATCTTATCTTTCTAAACTCTG
ATATAGTTACTATTAtatgtttaaagttttttcaataTGTAGATAGGTGT
TTGGTCGCGTAATATCGCTTGTATGCAATAAATCGAAATTTCCACGAAAC
TTTCTTATTTCACccgatgttctcataaaaaggACGTCTTTTAAGGTACT
GATTTTTTCAAGTTTGATGCTTTTG Run BLAST on NCBI protein sequence of TCONS_00013928-protein >TCONS_00013928-protein ID=TCONS_00013928-protein|Name=TCONS_00013928-protein|organism=Clytia hemisphaerica|type=polypeptide|length=162bp
KLERSLQKVVTGQRNNNMAWQFFILLLFATINHSKSYSCESDCKASYAAV
IEKVTDETTSTEMIRKVKERGDKHCALFCDLPRWYRDSCQKNCQGNANYY
QCFSDCASNHSRYVSEEIEIPEPEPQVFFNVHCYDEYITVEETFSWGSIS
FITPTVKCEIVQ Run BLAST on NCBI transcript from alignment at sc0000174:159249..161673 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00013928 ID=TCONS_00013928|Name=TCONS_00013928|organism=Clytia hemisphaerica|type=transcript|length=2425bp|location=Sequence derived from alignment at sc0000174:159249..161673 (Clytia hemisphaerica)
CAAAAGCATCAAACTTGAAAAAATCAGTACCTTAAAAGACGTccttttta
tgagaacatcggGTGAAATAAGAAAGTTTCGTGGAAATTTCGATTTATTG
CATACAAGCGATATTACGCGACCAAACACCTATCTACAtattgaaaaaac
tttaaacataTAATAGTAACTATATCAGAGTTTAGAAAGATAAGATACAA
TCTACGTTTCGCCAGTTGATCAAAATTAAGATTCAAAATCTCTCACTACT
TTTGTTTTCGATTTTAAATTTATAGGTGATTTTGGAAAGACTTATATTCA
TTTTCCACTATATTATATGATTTTACTAAATGCAAGAGAGTGTAAATTTG
AAATGTGAAGTATGACCATTAAAAATGTTAATTATTTCTAATAGGCCTTA
GCggtattttcgatttttctaaaaaagcgatgcattgtgtgattgtttcg
agtgtattacaatagaaatatcttaggaattcctcgaggaaATTCTGTTG
TAATACCATggatatacagggtgtccctaataaaagtatcgagtttgaac
atgcgattgagtagaaagtttcaagtgtgtattcacaaaattgtatttta
agctctccctcttttttctttgtcattacgtaacaataatgtaatgagcc
tatgtgatggagaacgttcttatattttagcgataacacacacaaacttt
tttactcaatcgcatgttcaaactcgatacttttattagggacaccctgt
ataaacgactgggcaTCCATCTCCGTTgtttttttgtagaaagggctgct
acttcgttgccgcctcgttaaaagcataaaatgaaacaataaattttgat
gatataccacttgagaataccttgctaacaacgtcaaaaatTCGACAATA
GACTCTGTTGCTCTACTCCTCTCGCGTCTTTTATCcatattaaaacaaaa
ataacagaggcaaaatcattgtcagcttgtcaaaactccgactaatattt
ctaaattttgacttaaaagtgtcgaataattttagagagtgtcacattct
aattttgatattcttataacacaggctctcaactttggcaagttattttt
ttcaagccataaaaaaatcattggagtgacaaaagagattcaaaagtata
tacgcagttgaaattctgcatttcagagttgaaaaatgttgataaaatat
attgcaaacttgtgaaaaaatcgcttcaaagagacaataaaagatagatg
tccagtcgtttgtATGTTCAtggtaatacactcgaaacagtCCCATGCAt
agctttttttagaaaaatcaaaaactccgatatgGTCTATAGTCGAAGTA
TTAGTGAAGTTAattaaatcggtaaaatcacgacgacgaacgaaaattta
acaggctagtgagtttcaaccaatcaaatttcgtattttcactagcctat
tacatttttcgtccgtcgtcgtgattaacCTGATCGTACTGTCCTTCTTC
GAAAAGATTTCGATAAATTAGATAGATTTATGATTATATCCCAAACCGAC
AAATTGAATACCCCAAAATATGCCAATTACGGTATacgccttttttataa
gaatgtactctataagaatattcatgattaaATTAGGCAACATAAAATCT
CTGattttagcaactgaacctaagaatgtcacttttagagcatttttata
ACGTTCACAAAATTGCCATTTTTTGGTTCAGGTATGGATTATACATGCTT
TATTCAAGGTTAACtttggatcctaacctaagaataccgtaagaaaattt
caggatgattttgcTAAAACACTAGAAAATATCAATGATGACaccattct
tattaaaaaagcgtATGTACCATGGGCGTTAACTTAAATCAAATAAGCGA
TGTCATTTTCTAGGTGATTAGTTCCTAGTTTTTGTCTATTGTACAATCTC
ACATTTGACGGTAGGTGTTATAAAACTAATGGAACCCCATGAAAATGTTT
CCTCAACAGTAATATATTCATCATAacaatgaacattgaaaaacACTTGA
GGTTCAGGTTCTGGGATCTCAATCTCTTCTGAAACATATCGAGAGTGATT
GGATGCACAATCGGAAAAACATTGGTAATAATTTGCATTTCCCTGGCAAT
TCTTTTGACAACTATCACGATACCATCGAGGGAGATCACAAAAAAGGGCA
CAATGCTTGTCACCTCTCTCTTTCACCTTTCGAATCATTTCAGTGCTGGT
TGTTTCATCTGTTACCTTCTCTATTACTGCTGCATAGGAAGCTTTGCAAT
CTGACTCGCAGCTATAACTTTTTGAGTGGTTTATGGTTGCAAAAAGCAAT
AGGATGAAGAATTGCCAAGCCATGTTGTTGTTTCTTTGGCCTGTGACTAC
CTTTTGTAAGCTTCTTTCCAATTTC Coding sequence (CDS) from alignment at sc0000174:159249..161673 >TCONS_00013928 ID=TCONS_00013928|Name=TCONS_00013928|organism=Clytia hemisphaerica|type=CDS|length=489bp|location=Sequence derived from alignment at sc0000174:159249..161673 (Clytia hemisphaerica)
CTATTGTACAATCTCACATTTGACGGTAGGTGTTATAAAACTAATGGAAC
CCCATGAAAATGTTTCCTCAACAGTAATATATTCATCATAacaatgaaca
ttgaaaaacACTTGAGGTTCAGGTTCTGGGATCTCAATCTCTTCTGAAAC
ATATCGAGAGTGATTGGATGCACAATCGGAAAAACATTGGTAATAATTTG
CATTTCCCTGGCAATTCTTTTGACAACTATCACGATACCATCGAGGGAGA
TCACAAAAAAGGGCACAATGCTTGTCACCTCTCTCTTTCACCTTTCGAAT
CATTTCAGTGCTGGTTGTTTCATCTGTTACCTTCTCTATTACTGCTGCAT
AGGAAGCTTTGCAATCTGACTCGCAGCTATAACTTTTTGAGTGGTTTATG
GTTGCAAAAAGCAATAGGATGAAGAATTGCCAAGCCATGTTGTTGTTTCT
TTGGCCTGTGACTACCTTTTGTAAGCTTCTTTCCAATTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00013928-exon-sc0000174-1491911889:159249..161673 | TCONS_00013928-exon-sc0000174-1491911889:159249..161673 | Clytia hemisphaerica | exon |
| TCONS_00013928-exon-sc0000174-1510915933:159249..161673 | TCONS_00013928-exon-sc0000174-1510915933:159249..161673 | Clytia hemisphaerica | exon |
| TCONS_00013928-exon-sc0000174-1575043694:159249..161673 | TCONS_00013928-exon-sc0000174-1575043694:159249..161673 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000174 | supercontig | sc0000174:159249..161673 . |
Blast
The following BLAST results are available for this feature:
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