TCONS_00013927 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013927
Unique NameTCONS_00013927
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length527

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013927 ID=TCONS_00013927|Name=TCONS_00013927|organism=Clytia hemisphaerica|type=transcript|length=527bp
TATAAGATAACATCAAAAATATCcttaagtttctttttatttaaaagcag
CTCCAAActtctttgaaaataatgaaatttattttcaatccaaACATAAC
CACAACTTTAGGAACCTTTACCAACACGGCGAAACaagaaagtctttgaa
agtTTATGTCTTTATCTACATTATCCAAGTTATCTAATAAAGTTGGATTC
TCTCTGACGATGTAgaaatcttcctttttttcttccaacCGGCTTGgtga
atatttcttttcattggacttttcctcTCGATCAGCATTCTCATCTGTAT
TCTCGATTGCATCAGAATCTGTTGTTCCAAGTTTAGCTACCTGGTGACAT
TTCAGAAAACACTTCTGTTTAATACAAGCTGTAAGACCTTCACCCGATTC
CAGAGACTTGCAAACATCTTTACATTGCTGGCAATCGTCATTGATTATAA
TTGCATCATCTACTGGATAACAGTCATATTGCTGAAAAATGCTTAAAGAA
AGATATACGATAAGCAACTGTATCCAC
Run BLAST on NCBI

protein sequence of TCONS_00013927-protein

>TCONS_00013927-protein ID=TCONS_00013927-protein|Name=TCONS_00013927-protein|organism=Clytia hemisphaerica|type=polypeptide|length=161bp
WIQLLIVYLSLSIFQQYDCYPVDDAIIINDDCQQCKDVCKSLESGEGLTA
CIKQKCFLKCHQVAKLGTTDSDAIENTDENADREEKSNEKKYSPSRLEEK
KEDFYIVRENPTLLDNLDNVDKDINFQRLSCFAVLVKVPKVVVMFGLKIN
FIIFKEVWSCF
Run BLAST on NCBI

transcript from alignment at sc0000174:149564..150090

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013927 ID=TCONS_00013927|Name=TCONS_00013927|organism=Clytia hemisphaerica|type=transcript|length=527bp|location=Sequence derived from alignment at sc0000174:149564..150090 (Clytia hemisphaerica)
GTGGATACAGTTGCTTATCGTATATCTTTCTTTAAGCATTTTTCAGCAAT
ATGACTGTTATCCAGTAGATGATGCAATTATAATCAATGACGATTGCCAG
CAATGTAAAGATGTTTGCAAGTCTCTGGAATCGGGTGAAGGTCTTACAGC
TTGTATTAAACAGAAGTGTTTTCTGAAATGTCACCAGGTAGCTAAACTTG
GAACAACAGATTCTGATGCAATCGAGAATACAGATGAGAATGCTGATCGA
gaggaaaagtccaatgaaaagaaatattcacCAAGCCGgttggaagaaaa
aaaggaagatttcTACATCGTCAGAGAGAATCCAACTTTATTAGATAACT
TGGATAATGTAGATAAAGACATAAactttcaaagactttcttGTTTCGCC
GTGTTGGTAAAGGTTCCTAAAGTTGTGGTTATGTttggattgaaaataaa
tttcattattttcaaagaagTTTGGAGctgcttttaaataaaaagaaact
taagGATATTTTTGATGTTATCTTATA

Coding sequence (CDS) from alignment at sc0000174:149564..150090

>TCONS_00013927 ID=TCONS_00013927|Name=TCONS_00013927|organism=Clytia hemisphaerica|type=CDS|length=486bp|location=Sequence derived from alignment at sc0000174:149564..150090 (Clytia hemisphaerica)
TGGATACAGTTGCTTATCGTATATCTTTCTTTAAGCATTTTTCAGCAATA
TGACTGTTATCCAGTAGATGATGCAATTATAATCAATGACGATTGCCAGC
AATGTAAAGATGTTTGCAAGTCTCTGGAATCGGGTGAAGGTCTTACAGCT
TGTATTAAACAGAAGTGTTTTCTGAAATGTCACCAGGTAGCTAAACTTGG
AACAACAGATTCTGATGCAATCGAGAATACAGATGAGAATGCTGATCGAg
aggaaaagtccaatgaaaagaaatattcacCAAGCCGgttggaagaaaaa
aaggaagatttcTACATCGTCAGAGAGAATCCAACTTTATTAGATAACTT
GGATAATGTAGATAAAGACATAAactttcaaagactttcttGTTTCGCCG
TGTTGGTAAAGGTTCCTAAAGTTGTGGTTATGTttggattgaaaataaat
ttcattattttcaaagaagTTTGGAGctgcttttaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007781XLOC_007781Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013927-proteinTCONS_00013927-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013927-exon-sc0000174-1491911889:149564..150090TCONS_00013927-exon-sc0000174-1491911889:149564..150090Clytia hemisphaericaexon
TCONS_00013927-exon-sc0000174-1510915933:149564..150090TCONS_00013927-exon-sc0000174-1510915933:149564..150090Clytia hemisphaericaexon
TCONS_00013927-exon-sc0000174-1575043694:149564..150090TCONS_00013927-exon-sc0000174-1575043694:149564..150090Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000174supercontigsc0000174:149564..150090 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.111565	0.108794	0.12632	0.247169	0.150452	0.356667	29.5476	24.305	10.3415	8.50095	8.81638	7.28158	0.222596	1.00173	0.253402	0.271939	0.837516	0.343371	0.237193	0.248205	0.755073	0.315684	0	0.348889	0.479131	0	0	0.163262	1.36212	0.756971
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00013927 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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