TCONS_00013926 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013926
Unique NameTCONS_00013926
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length514

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013926 ID=TCONS_00013926|Name=TCONS_00013926|organism=Clytia hemisphaerica|type=transcript|length=514bp
GGAAAAGACATGGACTTTTTTAGGTTTGTTCTACTCATTGTTTGCGTTCA
ACTTTCTCAAAGTCTGGGAGCGAATCAACGGATCAGATCGGATTGCAGAA
AATGGTGCAGAAATGAAGGATCAAAGAGTGCCCTGGCACTTTCTATTGCG
GAAGGCCAACTAGCAAACGAATGGAACCGTAACTGCACACGTGGATGTAT
TAAGAaacgaaatggaaaaacacGACAACACAAGGAAAAAGTATCCAAAA
TCACATTACGACCGGTACCAGCTCGGCCGAGTGATGAGGCTCTTTGTTAC
CATGTACCATACGTCACCAGTACAATAATATACATCGGAGACCAACAAAT
AAAAGTTGTTTATCAAGACATAAGAGTACATTGTGTTGCGGTATAAAACA
AACCCGGAAATCGAAGATAAAGCCTATGTAACACTAACCCAAAGTctaca
agaaaaatattattcaaATAAAAACTTCACAGTAACTTTACTCTCTTACT
TTTCTGACAAATTT
Run BLAST on NCBI

protein sequence of TCONS_00013926-protein

>TCONS_00013926-protein ID=TCONS_00013926-protein|Name=TCONS_00013926-protein|organism=Clytia hemisphaerica|type=polypeptide|length=131bp
GKDMDFFRFVLLIVCVQLSQSLGANQRIRSDCRKWCRNEGSKSALALSIA
EGQLANEWNRNCTRGCIKKRNGKTRQHKEKVSKITLRPVPARPSDEALCY
HVPYVTSTIIYIGDQQIKVVYQDIRVHCVAV
Run BLAST on NCBI

transcript from alignment at sc0000174:148711..149224

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013926 ID=TCONS_00013926|Name=TCONS_00013926|organism=Clytia hemisphaerica|type=transcript|length=514bp|location=Sequence derived from alignment at sc0000174:148711..149224 (Clytia hemisphaerica)
AAATTTGTCAGAAAAGTAAGAGAGTAAAGTTACTGTGAAGTTTTTATttg
aataatatttttcttgtagACTTTGGGTTAGTGTTACATAGGCTTTATCT
TCGATTTCCGGGTTTGTTTTATACCGCAACACAATGTACTCTTATGTCTT
GATAAACAACTTTTATTTGTTGGTCTCCGATGTATATTATTGTACTGGTG
ACGTATGGTACATGGTAACAAAGAGCCTCATCACTCGGCCGAGCTGGTAC
CGGTCGTAATGTGATTTTGGATACTTTTTCCTTGTGTTGTCgtgtttttc
catttcgttTCTTAATACATCCACGTGTGCAGTTACGGTTCCATTCGTTT
GCTAGTTGGCCTTCCGCAATAGAAAGTGCCAGGGCACTCTTTGATCCTTC
ATTTCTGCACCATTTTCTGCAATCCGATCTGATCCGTTGATTCGCTCCCA
GACTTTGAGAAAGTTGAACGCAAACAATGAGTAGAACAAACCTAAAAAAG
TCCATGTCTTTTCC

Coding sequence (CDS) from alignment at sc0000174:148711..149224

>TCONS_00013926 ID=TCONS_00013926|Name=TCONS_00013926|organism=Clytia hemisphaerica|type=CDS|length=396bp|location=Sequence derived from alignment at sc0000174:148711..149224 (Clytia hemisphaerica)
TTATACCGCAACACAATGTACTCTTATGTCTTGATAAACAACTTTTATTT
GTTGGTCTCCGATGTATATTATTGTACTGGTGACGTATGGTACATGGTAA
CAAAGAGCCTCATCACTCGGCCGAGCTGGTACCGGTCGTAATGTGATTTT
GGATACTTTTTCCTTGTGTTGTCgtgtttttccatttcgttTCTTAATAC
ATCCACGTGTGCAGTTACGGTTCCATTCGTTTGCTAGTTGGCCTTCCGCA
ATAGAAAGTGCCAGGGCACTCTTTGATCCTTCATTTCTGCACCATTTTCT
GCAATCCGATCTGATCCGTTGATTCGCTCCCAGACTTTGAGAAAGTTGAA
CGCAAACAATGAGTAGAACAAACCTAAAAAAGTCCATGTCTTTTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007780XLOC_007780Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013926-exon-sc0000174-1491911889:148711..149224TCONS_00013926-exon-sc0000174-1491911889:148711..149224Clytia hemisphaericaexon
TCONS_00013926-exon-sc0000174-1510915933:148711..149224TCONS_00013926-exon-sc0000174-1510915933:148711..149224Clytia hemisphaericaexon
TCONS_00013926-exon-sc0000174-1575043694:148711..149224TCONS_00013926-exon-sc0000174-1575043694:148711..149224Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013926-proteinTCONS_00013926-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000174supercontigsc0000174:148711..149224 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.232641	0	0.131704	0	0	0	45.9113	40.3215	23.329	22.2189	15.4381	15.2614	0.309444	0.482042	0.330253	0	0	0.179003	1.36016	0.388176	0.112465	0.16457	0.133371	0	0.499553	0	0	0	0.38732	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00013926 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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