|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013919 ID=TCONS_00013919|Name=TCONS_00013919|organism=Clytia hemisphaerica|type=transcript|length=2454bp
gaaataaaattgcgaAGATGATTTCGTTTAAATAGAAAACTTTATCTACA
TCAgtatatatatttttccaaaatataaatcaatttatccttaaaaacat
aaaacagtATTTTGCTCGTTTAATCATACAATAACCTGATTCTcgtaatg
ttttctttaagggcaTGAGAAAACTCTTAAAATTCGCCAACCAAACGTAT
CTTTACGTTAAATATTTCAATAAGATATTCCATAATCTAAAGAAACGATC
AATTTTCTCATGGTCAGACCATTGCCAGTACGCATTGACTAACAAAATGG
AAAAGGCAGTtcgtttgtgtttttttttcatctctTCTGGTGTTACGACA
CGGTGGGCTAAGTAAACATTATCTGAATCAGGTTATCAGGCTCTCgtgtg
gaatagacgttaaagTTACTACGTAGAAAAAAagccgtgacgtctagtat
aggctatgcTCTCTGCAACTACGACAAAGTAAGTTTCGAGACTAGCTCAG
AAAAAAGCATGAAGAgataacaaaaatcaaaaactaaaaaaaggccGTAA
CCTCGCCTTAAACTTTAGTCTGAACGCGGCGTTAATGTTCATTACTGGGA
TAAGACTTAaaggggagtttctaaacatcgactaGAAATGGCGGCCACGA
CCAGCGGCCACGCccagcgaccacgaccacgaccggcgaccagatagcTG
AATgggatgcctttagtatgaatagatagaacttgtcagtaggaaaaaat
ttggaagtacagttttagagatatgaatctaatcaattattctattgttt
ttatgctgacaaaatgactaatttcgacagaaataacaatctgatgatga
aatacaaagcttctcaaacaaatttcaaaaaagttgatgccactaattat
tttgatgctgataatacaaaaggatcgaaattgacaccataatcaagctc
aaagagcgtcgaaatggctgttttacgtatttggcacgtggctttaaata
gatgagacagaggtgagcttactcttcaatattatattcaaatgattaga
agagacactctacgttggagaaagGGAAAAAACTCAATAACCCAAATTTT
TCTGGTCACTGGTCGTGGTCGTCGTTTAGAAACTCCcgacttaaaggttt
tgttttgattgaaaggtctgatgatgctgatgtagtaaaaacaagtgcga
caagattaaaaaaaggttttgaaaaaatgaaaatacattgaatacTNAGT
GCGACAagattaaaaaaaggttttgaaaaaatgaaaatacattgaatacT
AAGCATGAAGACCATGAAGAcactgcctaaaataagctccttttattccc
gTAGAAAACCTTTAATAACTATCTGCAGAGTGCAGTGTTTAGTCTTTTTG
TCCGATTAAATCATCTTTAATCCCTAAAGAAACTGAATTAGGATTCGAAG
GAATTCAATCAAAACTTGTCATGAATTATAGCTCTCTTTTAAATTTCAAC
CCCAACTTTTTCTAGGAACATTGTCTTATAGAAATTGTATCcaatcaaat
aaaagaaaataacgAGAGCTATACACCCGATATTACAATCTTATCAAACC
AGAAAATATAgtttgaaaatggaaatatATTAAAATAAGATTGGAAATCG
TCTAAATAAAAATCTCAAtcataaaatctcaaaataattaaatctgtcaa
ataaattattttttttaatcatgttaaaaacaactttttcaaCACAACGT
TAAATAGTCTCTGAAATATTCCAATAAGCGATCCGAGAAGGAATTAAAAA
CTGCTATTTTTGAATCTTCCAGGGTAAAACAAGTCCATGGAAAATGGTCT
TCTTCCATCATCTCAATATGTCTAAAGGTTCAGCCATGAATGAATGCAGA
ATCCAGAGCTAAGTACTAGCTAAGAAATTGTATGAATGAGTATGAATCTA
TATCCGTATATATGTAAGGGGTGTACACTCTTTGTTTTGTGTCAATAAAA
TAATCTCttcttttcgattttcattttcaaacatGCGTATATccgtaccc
agctggcacacaacgtgcatataacgttagatgaacgttgaaacaacgtt
gtgtgccagttgggtaGGTTTCTTCCTATTCAACCATAAAGAATGGTAAT
TGGTAATTACCTTGACCTCTTTCCGTCCGGACATCTACTTTGAGTACATG
CTTCTCTTCAATTCGATTTTGACGAATGTCACAAGAGGTTGTTGGTCCAC
TTTGTCCAATTTATATTTCAATGTATTTAGTCCGTCCGCTGACATTCTTT
GACCTGAGCTTCTCAACAAGTTCATCCTGAAATCGGAAAATAGAAAGTTG
AGTTATTAGTGGttattagactggagtcgtttataatgcgtgtaatacag
tagtataggcgttatatgataatacgattattgttacgggatttagtttg
tata Run BLAST on NCBI transcript from alignment at sc0000174:61731..64184 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00013919 ID=TCONS_00013919|Name=TCONS_00013919|organism=Clytia hemisphaerica|type=transcript|length=2454bp|location=Sequence derived from alignment at sc0000174:61731..64184 (Clytia hemisphaerica)
tatacaaactaaatcccgtaacaataatcgtattatcatataacgcctat
actactgtattacacgcattataaacgactccagtctaataaCCACTAAT
AACTCAACTTTCTATTTTCCGATTTCAGGATGAACTTGTTGAGAAGCTCA
GGTCAAAGAATGTCAGCGGACGGACTAAATACATTGAAATATAAATTGGA
CAAAGTGGACCAACAACCTCTTGTGACATTCGTCAAAATCGAATTGAAGA
GAAGCATGTACTCAAAGTAGATGTCCGGACGGAAAGAGGTCAAGGTAATT
ACCAATTACCATTCTTTATGGTTGAATAGGAAGAAACCtacccaactggc
acacaacgttgtttcaacgttcatctaacgttatatgcacgttgtgtgcc
agctgggtacggATATACGCatgtttgaaaatgaaaatcgaaaagaaGAG
ATTATTTTATTGACACAAAACAAAGAGTGTACACCCCTTACATATATACG
GATATAGATTCATACTCATTCATACAATTTCTTAGCTAGTACTTAGCTCT
GGATTCTGCATTCATTCATGGCTGAACCTTTAGACATATTGAGATGATGG
AAGAAGACCATTTTCCATGGACTTGTTTTACCCTGGAAGATTCAAAAATA
GCAGTTTTTAATTCCTTCTCGGATCGCTTATTGGAATATTTCAGAGACTA
TTTAACGTTGTGttgaaaaagttgtttttaacatgattaaaaaaaataat
ttatttgacagatttaattattttgagattttatgaTTGAGATTTTTATT
TAGACGATTTCCAATCTTATTTTAATatatttccattttcaaacTATATT
TTCTGGTTTGATAAGATTGTAATATCGGGTGTATAGCTCTcgttattttc
ttttatttgattgGATACAATTTCTATAAGACAATGTTCCTAGAAAAAGT
TGGGGTTGAAATTTAAAAGAGAGCTATAATTCATGACAAGTTTTGATTGA
ATTCCTTCGAATCCTAATTCAGTTTCTTTAGGGATTAAAGATGATTTAAT
CGGACAAAAAGACTAAACACTGCACTCTGCAGATAGTTATTAAAGGTTTT
CTAcgggaataaaaggagcttattttaggcagtgTCTTCATGGTCTTCAT
GCTTAgtattcaatgtattttcattttttcaaaacctttttttaatctTG
TCGCACTNAgtattcaatgtattttcattttttcaaaacctttttttaat
cttgtcgcacttgtttttactacatcagcatcatcagacctttcaatcaa
aacaaaacctttaagtcgGGAGTTTCTAAACGACGACCACGACCAGTGAC
CAGAAAAATTTGGGTTATTGAGTTTTTTCCctttctccaacgtagagtgt
ctcttctaatcatttgaatataatattgaagagtaagctcacctctgtct
catctatttaaagccacgtgccaaatacgtaaaacagccatttcgacgct
ctttgagcttgattatggtgtcaatttcgatccttttgtattatcagcat
caaaataattagtggcatcaacttttttgaaatttgtttgagaagctttg
tatttcatcatcagattgttatttctgtcgaaattagtcattttgtcagc
ataaaaacaatagaataattgattagattcatatctctaaaactgtactt
ccaaattttttcctactgacaagttctatctattcatactaaaggcatcc
cATTCAgctatctggtcgccggtcgtggtcgtggtcgctggGCGTGGCCG
CTGGTCGTGGCCGCCATTTCtagtcgatgtttagaaactccccttTAAGT
CTTATCCCAGTAATGAACATTAACGCCGCGTTCAGACTAAAGTTTAAGGC
GAGGTTACggcctttttttagtttttgatttttgttatcTCTTCATGCTT
TTTTCTGAGCTAGTCTCGAAACTTACTTTGTCGTAGTTGCAGAGAgcata
gcctatactagacgtcacggctTTTTTTCTACGTAGTAActttaacgtct
attccacacGAGAGCCTGATAACCTGATTCAGATAATGTTTACTTAGCCC
ACCGTGTCGTAACACCAGAagagatgaaaaaaaaacacaaacgaACTGCC
TTTTCCATTTTGTTAGTCAATGCGTACTGGCAATGGTCTGACCATGAGAA
AATTGATCGTTTCTTTAGATTATGGAATATCTTATTGAAATATTTAACGT
AAAGATACGTTTGGTTGGCGAATTTTAAGAGTTTTCTCAtgcccttaaag
aaaacattacgAGAATCAGGTTATTGTATGATTAAACGAGCAAAATactg
ttttatgtttttaaggataaattgatttatattttggaaaaatatatata
cTGATGTAGATAAAGTTTTCTATTTAAACGAAATCATCTtcgcaatttta
tttc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00013919-exon-sc0000174-1491911889:61731..64184 | TCONS_00013919-exon-sc0000174-1491911889:61731..64184 | Clytia hemisphaerica | exon |
| TCONS_00013919-exon-sc0000174-1510915933:61731..64184 | TCONS_00013919-exon-sc0000174-1510915933:61731..64184 | Clytia hemisphaerica | exon |
| TCONS_00013919-exon-sc0000174-1575043694:61731..64184 | TCONS_00013919-exon-sc0000174-1575043694:61731..64184 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000174 | supercontig | sc0000174:61731..64184 . |
Blast
The following BLAST results are available for this feature:
|
