TCONS_00013915 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013915
Unique NameTCONS_00013915
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length785

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013915 ID=TCONS_00013915|Name=TCONS_00013915|organism=Clytia hemisphaerica|type=transcript|length=785bp
GTCATCACAACTACAAACAAAAATGGATCCGTTCTTTACCATGGTAACCG
GCATCAAAGACGCATTGAAGGAGATCGCGAAGGCGGAGATGGTCGACACG
GGAAAGCATATGGCAATAGTGACAAACAGAGAAGCAAAGATTACCGCAAA
CAGAGATGAGACAAAAATCCAGATGCATGCCAAACTTCCCAAGCTCAAAA
TTGCTACGTTCAACGGTACACACATCGACTGGTTCCGGTTCTGGAATCAA
TTTGAAGCAGAGATCGATGGTTCAACGATTGCACCTGTAACAAAATTTTC
GTACTTGCGGGATATGCTGTCAAATCAACCATTATCTATGATCAATGGAC
TGCCCTTCAACGCGGAGGGGTACGAGCGAGCCAAGACTATTTTACAAAGC
aagtaaatttaaataaatCCAGCGAAGTTGTCAACGCACACATTCAACGC
ATCATGTCCTTACCTTTAATCCAAGGAACCAGCACATCAAAGATTCATAA
CTTCTACGAAATTCTCGTCAACAGCATACAATCATTGGAAACAATGGGGA
AACTCAATCAAATTGAAGGTTACGTACGAATGACCCTCGATAAGTTACCA
GGTATTCGATCAGACCTGGTACACTTAGACAAAGACTGGCATAGTTAGAA
CTTTGCAGCCTTCGTCAACTCACTATCTGAATGGATTGAACGAAACCCTA
GAACTTCAAGAGATGATCAGCGAAGAGATGATTCGCGAAGAGACCACAGA
AACGACTCACGAAGAGATCAGCGAGATCATTCACA
Run BLAST on NCBI

protein sequence of TCONS_00013915-protein

>TCONS_00013915-protein ID=TCONS_00013915-protein|Name=TCONS_00013915-protein|organism=Clytia hemisphaerica|type=polypeptide|length=134bp
SSQLQTKMDPFFTMVTGIKDALKEIAKAEMVDTGKHMAIVTNREAKITAN
RDETKIQMHAKLPKLKIATFNGTHIDWFRFWNQFEAEIDGSTIAPVTKFS
YLRDMLSNQPLSMINGLPFNAEGYERAKTILQSK
Run BLAST on NCBI

transcript from alignment at sc0000174:44069..44853

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013915 ID=TCONS_00013915|Name=TCONS_00013915|organism=Clytia hemisphaerica|type=transcript|length=785bp|location=Sequence derived from alignment at sc0000174:44069..44853 (Clytia hemisphaerica)
TGTGAATGATCTCGCTGATCTCTTCGTGAGTCGTTTCTGTGGTCTCTTCG
CGAATCATCTCTTCGCTGATCATCTCTTGAAGTTCTAGGGTTTCGTTCAA
TCCATTCAGATAGTGAGTTGACGAAGGCTGCAAAGTTCTAACTATGCCAG
TCTTTGTCTAAGTGTACCAGGTCTGATCGAATACCTGGTAACTTATCGAG
GGTCATTCGTACGTAACCTTCAATTTGATTGAGTTTCCCCATTGTTTCCA
ATGATTGTATGCTGTTGACGAGAATTTCGTAGAAGTTATGAATCTTTGAT
GTGCTGGTTCCTTGGATTAAAGGTAAGGACATGATGCGTTGAATGTGTGC
GTTGACAACTTCGCTGGatttatttaaatttacttGCTTTGTAAAATAGT
CTTGGCTCGCTCGTACCCCTCCGCGTTGAAGGGCAGTCCATTGATCATAG
ATAATGGTTGATTTGACAGCATATCCCGCAAGTACGAAAATTTTGTTACA
GGTGCAATCGTTGAACCATCGATCTCTGCTTCAAATTGATTCCAGAACCG
GAACCAGTCGATGTGTGTACCGTTGAACGTAGCAATTTTGAGCTTGGGAA
GTTTGGCATGCATCTGGATTTTTGTCTCATCTCTGTTTGCGGTAATCTTT
GCTTCTCTGTTTGTCACTATTGCCATATGCTTTCCCGTGTCGACCATCTC
CGCCTTCGCGATCTCCTTCAATGCGTCTTTGATGCCGGTTACCATGGTAA
AGAACGGATCCATTTTTGTTTGTAGTTGTGATGAC

Coding sequence (CDS) from alignment at sc0000174:44069..44853

>TCONS_00013915 ID=TCONS_00013915|Name=TCONS_00013915|organism=Clytia hemisphaerica|type=CDS|length=405bp|location=Sequence derived from alignment at sc0000174:44069..44853 (Clytia hemisphaerica)
ttacttGCTTTGTAAAATAGTCTTGGCTCGCTCGTACCCCTCCGCGTTGA
AGGGCAGTCCATTGATCATAGATAATGGTTGATTTGACAGCATATCCCGC
AAGTACGAAAATTTTGTTACAGGTGCAATCGTTGAACCATCGATCTCTGC
TTCAAATTGATTCCAGAACCGGAACCAGTCGATGTGTGTACCGTTGAACG
TAGCAATTTTGAGCTTGGGAAGTTTGGCATGCATCTGGATTTTTGTCTCA
TCTCTGTTTGCGGTAATCTTTGCTTCTCTGTTTGTCACTATTGCCATATG
CTTTCCCGTGTCGACCATCTCCGCCTTCGCGATCTCCTTCAATGCGTCTT
TGATGCCGGTTACCATGGTAAAGAACGGATCCATTTTTGTTTGTAGTTGT
GATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007769XLOC_007769Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013915-proteinTCONS_00013915-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013915-exon-sc0000174-1491911889:44069..44853TCONS_00013915-exon-sc0000174-1491911889:44069..44853Clytia hemisphaericaexon
TCONS_00013915-exon-sc0000174-1510915933:44069..44853TCONS_00013915-exon-sc0000174-1510915933:44069..44853Clytia hemisphaericaexon
TCONS_00013915-exon-sc0000174-1575043694:44069..44853TCONS_00013915-exon-sc0000174-1575043694:44069..44853Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000174supercontigsc0000174:44069..44853 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.139478	0.0682288	0.41531	0.19691	0.0791879	0.296539	0.103807	0.192873	0.187207	0.164083	0.245783	0.127624	0	0.150133	0	0	0.458325	0.0685149	0.119104	0	0	0	0.13226	0	0	0	0.136728	0.0696519
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005312DUF1759
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00013915 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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