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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013893 ID=TCONS_00013893|Name=TCONS_00013893|organism=Clytia hemisphaerica|type=transcript|length=2060bp
AGAAACTTAAACCAACCAAAAAATATTTACGACCACCGATCAACCTTGAG
TTCTTCATCTTGGTACGAGGCATTATGAGGTGGGAGTATAAAGAAGAACA
CGCCTTTGAAAGAAGAAGATCAGAGGGAGAGAAAATTAGAAGGAAGTATC
CAGATAGAGTTCCAgtaatCGTTGAAAAATCCCCAAAAGCAAAGATTGGC
GATTTGGACAAAAAGAAGTACTTGGTACCATCTGATTTAACAGTCGGaca
attttattttctgattcGCAAACGAATTCATCTAAGGGCCGAAGACGCTC
TCTTTTTCTTCGTAAACAACACCATCCCTCCAACGTCTGCAACAATGGGT
GCTTTATACCAAGAACATCACGAagaagacttttttctttacgttGCCTA
TAGTGATGAAAGTGTTTACGGTGGCTCTCCTTCATTGGTGTAAATAATTT
GTCTTTTTCATGCGTGGTTAACAAGTTTCTGGTCGAATATACAAGATTGG
CCTGCAATTAAATGTGGCTTGGTCAAAGTGAAGTTTTTCATTCTCAACTA
TTTATAGAAAAAATGTATTTagattgatatttttattatcTGAACTTCTT
TGTTTTACAATAGAATTAATGAAagtttttacttcaaatttccatatttt
tttctgcaatctttggttttctttttgtttggattgaaaattatttGGAG
CTTTTTCTATGTACGAATGGCCAGGAATGGCTATTTCTGTTTTCAAGTTG
TTAGTTTTGTACCTATTTTTTGGGCCTGGGCTTCTTTGACATCACATTAA
CTCAATTAGTATGCTATGTAGTGCTATATTATTTAGTTTTAGATAATCAA
AACTTGTTTATCTTTAAGAATTTAAAGTATAGAGAATAGTAGATTTTGCA
GTTTTTTGTTCAATTGGGAAAGTTGTCAATAAGttttacttttaactttt
ttttgtgcattttaatttggtttgatttttttatttaagtttcATTTATA
TATGCATTTCGAACACATCACGCGGCATTAGTGGCATCTGTTTTACAATT
GCTCTGATAACGTACACCTGTACTTACTTGGACGTTTAAGGAACTTGTAC
TCATTTAAATTTGTCGGTTCGAATCTGTATATTCGCttcaatttttatgt
ttttgtgttgttgtgtttaatttaaaagaaataatcaccttgtttatttt
tatttttgcatcATTATATTATTACGTTTTAAGTTTGTTTGTATTTATGT
aaacattgaaaagaaaaaatacttTNgtttccaaatttttgtaaccctta
gagagactttgaaaggtgaaaaacccgacccttaccgtccgcacataccc
agcacctatttttgcctaagtacccccccccggggtagTGCTATATTATT
TAGTTTTAGATAATCAAAACTGGTTTATCTTTAAGAATTTAAAGTATAGA
GAATAGTAGATTTTGCAGTTTTTTGTTCAATTGGGAAAGTTGTCAATAAG
ttttacttttaacttttttttgtgcattttaatttggtttgattttttta
tttaagtttcATTTATATATGCATTTCGAACACATCACGCGGCATTAGTG
GCATCTGTTTTACAATTGCTCTGATAACGTACACCTGTACTTACTTGGAC
GTTTAAGGAACTTGTACTCATTTAAATTTGTCGGTTCGAATCTGTATATT
CGCttcaatttttatgtttttgtgttgttgtgtttaatttaaaagaaata
atcaccttgtttatttttatttttgcatcATTATATTATTACGTTTTAAG
TTTGTTTGTATTTATGTaaacattgaaaagaaaaaatacttTCTAGATTA
TCAATAAAATATCTCGTTTTATATTAGTAGTTAAACAAATAGGAAAATAT
ACATAAAAATTGTCATTATTTGTAAATTTGAAGCTAcgttatataaaaag
aaatgaaTAAGCATTATAACTTTAGAATTTAAGTCGATGTTTTGCCTGAT
TTTTGCATAATTCTTTATAGATCAACATCAttagcttgaaaaaaaaaaca
tttgactcGA Run BLAST on NCBI transcript from alignment at sc0000174:489414..495517- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00013893 ID=TCONS_00013893|Name=TCONS_00013893|organism=Clytia hemisphaerica|type=transcript|length=6104bp|location=Sequence derived from alignment at sc0000174:489414..495517- (Clytia hemisphaerica)
AGAAACTTAAACCAACCAAAAAATATTTACGACCACCGATCAACCTTGAG
TTCTTCATCTTGGTACGAGGCATTATGAGGTGGGAGTATAAAGAAGAACA
CGCCTTTGAAAGAAGAAGATCAGAGGGAGAGAAAATTAGAAGGAAGTATC
CAGATAGAGTTCCAGTAAGTTTTATTACATTTATTTTGCTGTCTACCTAG
TGTGCAGAGGCAGAGGGGACTGAACTCCCCTCATTTTTATTTCATGCCCC
CTATATGTGTATCATCCTGTTTAAAAAATAATTCGAACCCAAGCTATTTA
GCTACAGCCAGTGTAGACCTAAAAAGCTCTAAAACAGCATCTAATAACAT
GAAAACCAGAATATGATTCTTCAATGGGAATCAAAACTATAAAGTGCACT
TACAAACATCAATTTGTCAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAAATGAT
CTATCACAGCTCAGTCTACCATTTTTAACGCGGTCCGAGGATTGAGCCGA
GAACGCTCCGCGAACTCCTGCGCGGGTGAAAAACTTCAATCTGTCAATCA
TTTTCTCAAGCGAAGAGTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTGCGGGACTT
TGGCTTGAGTGCTTGAGTGCAGCATAGGGTACAAAGTCCAAACATGCGTT
TCCCATAATTTTTGTATGAAGAGTTAGGTCTATACTGACAGCATCAACAG
TCCACCACCAGTCAATTCAAAACCAAAAGTATTGAAATTTGTATTAAACC
AGACGTCCAAGCTCGATAGGATCGATCATCGGAGCGGCTCGATGACGGAT
CGATATGTGATCGATGGATTACTTAACGATCCGGATAGGAGATCAATGGA
AGATTCGGCCATTAAAGGGACCCCCTCGCTTAAAAATGATAACAATACAC
TCACTTCATAATCATATGAAAAGCAACTTCCCAAAGTATTAGCACGCAAA
ACTCTTTCTTCGCTCCATAATTAGAAATTATAAATTTTGATGTTCACTCA
ACTTTCAGAAATTTCAAATGGCTTCTTAAGGCCTTCGAATTTTCTCGCGC
TCTTGTCGCACCAAGTCGTCGACACAAAGTTCTTGAATAAATAAGCATCT
TGTGCTGAATTCACCTTTGAAAACAACAAAATTGTGTCCGTCTGTCACTG
TCTGTCACACATTTTCAGTTATAACTCAAATTTGGTTAAAGAAAATAGCT
TGAAATTTTCAAATCATATACTATGGAGTAATACTGTACTTTCACATAAA
ATTGACAAGAATTTAGAAAGCCTAATTCAAAACCCAGTGGATAAAAGACA
GGCATATCAGTTAGGGAAACCATCCAGGATCCTGCCATTCTATAAGCCAG
CAAAAACTAAATAACACTTGTAAACTTAAGTTTCTTACCATTTTCCATCG
AAAACAACCAAAAATATTGCTACATCCCAAAGCCGGAGACCAAAACAAAT
TATGGCGCCCTTTTGGATCTATTGTTAAGGCCATCTAAAATGGTGGAAAG
AGTGGCAGAAAGACAAAGGCGCTCGCTGCGTTGAGGGTGGTAACGCCAAA
ACGCCCAATATGATCTTCCAATAGAAGGCGAGTTAGTTGCCGCGCGAGTT
ACGTCATGCACTCCACCGCAGCGCATAACAAAGCGTGTTTAAAATGAATA
TCATTAATTATAAGAATATTTTATGTGCTTACTTTCAGTAAACTTCGAGT
GCTTCATTAAAGATGAAGAAGGTAAGAAGATAAGAAATGCGCTGGATAAT
TTTCATTGTAGCAGTTTGGTCAATCATCGTTGAAAGTTTGAAAAAGTTTT
TCCGACGCAAAAGAAAATGTCAACCAATTAAAAGCACAGTGTGCCTATAC
TTACTATGTTTGCTACATTGTCTAGGCTAAAAAAAGTGCAAAAAGACACG
AACGCCATTTTTTAATGAGTGACGTTATGATTTTTTTGATTGCGGCCGCG
TACAGGAACTCGCCAAATGTTCCTAGCTGCATATGCTTGACATGACCATA
GTATAGATTTTTGCTAATATTTCAAAGACGAAACAAAGTATCAAAAAATG
ACTTACTTAGTCCTGACTGATACCTTCTGCCACAGTACCAAATCCACAAA
AACTCAAGCTCTAATACCTAACACATTTACTTCTATGGCAATTTGATAAA
ATTTTGTCTTGTTTACAAACCCATGGTACAGATTTGGTGCAATTCACCCT
CAAATATATTATTAACAGCACTGCTTCTGTTTACTAAAAGAGATTAAAAT
AATTGATGTTTATTGTAATGTTGTCGTTGGATAAGGAATTAAGAGGTGTG
TAATGGACTAAATTTATAACAATAATAATAATAATAATAATAATAATCAA
TAGCTATTTAAAAATCTGTAATTACCATCAAACTGGTTTACACAAGGGTA
AACCACTCTTAAAAACTATTGGTCAAAGTAAGAAAAACGAATTATTTTGA
TTTCTACAGCTAATTTCAGACTTCTTTGAGTTTTAGAGTTTTACCAAATA
CCTACTAATTAATAAAGGAAATTATACTGTTCCATAAGATGCTGACATAA
TAATGTTTTTGTGTTTTTTGCCTACAGGTAATCGTTGAAAAATCCCCAAA
AGCAAAGATTGGCGATTTGGACAAAAAGAAGTACTTGGTACCATCTGATT
TAACAGGTTTGAATTTTTGGACTGATATTTTCTTGTAATTTCAGATGAAA
GGTTTTTTTCAAAAGCCACAAAGTAAAAAGGAGGCTCGCAAAAATTTCTA
ATTGCAAAGGTACGCTTTTACTGCAAGTATTGTAGAGTAGGTTGAAAACT
TTTGTGCTATTAAAAGTCTTTCTATTTCTCTTTTCAGTCGGACAATTTTA
TTTTCTGATTCGCAAACGAATTCATCTAAGGGCCGAAGACGCTCTCTTTT
TCTTCGTAAACAACACCATCCCTCCAACGTCTGCAACAATGGGTGCTTTA
TACCAAGAACATCACGAAGAAGACTTTTTTCTTTACGTTGCCTATAGTGA
TGAAAGTGTTTACGGTGGCTCTCCTTCATTGGTGTAAATAATTTGTCTTT
TTCATGCGTGGTTAACAAGTTTCTGGTCGAATATACAAGATTGGCCTGCA
ATTAAATGTGGCTTGGTCAAAGTGAAGTTTTTCATTCTCAACTATTTATA
GAAAAAATGTATTTAGATTGATATTTTTATTATCTGAACTTCTTTGTTTT
ACAATAGAATTAATGAAAGTTTTTACTTCAAATTTCCATATTTTTTTCTG
CAATCTTTGGTTTTCTTTTTGTTTGGATTGAAAATTATTTGGAGCTTTTT
CTATGTACGAATGGCCAGGAATGGCTATTTCTGTTTTCAAGTTGTTAGTT
TTGTACCTATTTTTTGGGCCTGGGCTTCTTTGACATCACATTAACTCAAT
TAGTATGCTATGTAGTGCTATATTATTTAGTTTTAGATAATCAAAACTTG
TTTATCTTTAAGAATTTAAAGTATAGAGAATAGTAGATTTTGCAGTTTTT
TGTTCAATTGGGAAAGTTGTCAATAAGTTTTACTTTTAACTTTTTTTTGT
GCATTTTAATTTGGTTTGATTTTTTTATTTAAGTTTCATTTATATATGCA
TTTCGAACACATCACGCGGCATTAGTGGCATCTGTTTTACAATTGCTCTG
ATAACGTACACCTGTACTTACTTGGACGTTTAAGGAACTTGTACTCATTT
AAATTTGTCGGTTCGAATCTGTATATTCGCTTCAATTTTTATGTTTTTGT
GTTGTTGTGTTTAATTTAAAAGAAATAATCACCTTGTTTATTTTTATTTT
TGCATCATTATATTATTACGTTTTAAGTTTGTTTGTATTTATGTAAACAT
TGAAAAGAAAAAATACTTTNGTTTCCAAATTTTTGTAACCCTTAGAGAGA
CTTTGAAAGGTGAAAAACCCGACCCTTACCGTCCGCACATACCCAGCACC
TATTTTTGCCTAAGTACCCCCCCCCGGGGTAGTGCTATATTATTTAGTTT
TAGATAATCAAAACTGGTTTATCTTTAAGAATTTAAAGTATAGAGAATAG
TAGATTTTGCAGTTTTTTGTTCAATTGGGAAAGTTGTCAATAAGTTTTAC
TTTTAACTTTTTTTTGTGCATTTTAATTTGGTTTGATTTTTTTATTTAAG
TTTCATTTATATATGCATTTCGAACACATCACGCGGCATTAGTGGCATCT
GTTTTACAATTGCTCTGATAACGTACACCTGTACTTACTTGGACGTTTAA
GGAACTTGTACTCATTTAAATTTGTCGGTTCGAATCTGTATATTCGCTTC
AATTTTTATGTTTTTGTGTTGTTGTGTTTAATTTAAAAGAAATAATCACC
TTGTTTATTTTTATTTTTGCATCATTATATTATTACGTTTTAAGTTTGTT
TGTATTTATGTAAACATTGAAAAGAAAAAATACTTTCTAGATTATCAATA
AAATATCTCGTTTTATATTAGTAGTTAAACAAATAGGAAAATATACATAA
AAATTGTCATTATTTGTAAATTTGAAGCTACGTTATATAAAAAGAAATGA
ATAAGCATTATAACTTTAGAATTTAAGTCGATGTTTTGCCTGATTTTTGC
ATAATTCTTTATAGATCAACATCATTAGCTTGAAAAAAAAAACATTTGAC
TCGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00013893-exon-sc0000174-1575043694:495354..495517 | TCONS_00013893-exon-sc0000174-1575043694:495354..495517 | Clytia hemisphaerica | exon |
| TCONS_00013893-exon-sc0000174-1575043694:491412..491490 | TCONS_00013893-exon-sc0000174-1575043694:491412..491490 | Clytia hemisphaerica | exon |
| TCONS_00013893-exon-sc0000174-1575043694:489414..491230 | TCONS_00013893-exon-sc0000174-1575043694:489414..491230 | Clytia hemisphaerica | exon |
| TCONS_00013893-exon-sc0000174-1510915933:495354..495517 | TCONS_00013893-exon-sc0000174-1510915933:495354..495517 | Clytia hemisphaerica | exon |
| TCONS_00013893-exon-sc0000174-1510915933:491412..491490 | TCONS_00013893-exon-sc0000174-1510915933:491412..491490 | Clytia hemisphaerica | exon |
| TCONS_00013893-exon-sc0000174-1510915933:489414..491230 | TCONS_00013893-exon-sc0000174-1510915933:489414..491230 | Clytia hemisphaerica | exon |
| TCONS_00013893-exon-sc0000174-1491911889:495354..495517 | TCONS_00013893-exon-sc0000174-1491911889:495354..495517 | Clytia hemisphaerica | exon |
| TCONS_00013893-exon-sc0000174-1491911889:491412..491490 | TCONS_00013893-exon-sc0000174-1491911889:491412..491490 | Clytia hemisphaerica | exon |
| TCONS_00013893-exon-sc0000174-1491911889:489414..491230 | TCONS_00013893-exon-sc0000174-1491911889:489414..491230 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000174 | supercontig | sc0000174:489414..495517 - |
Blast
BLAST of TCONS_00013893 vs. Swiss-Prot (Human)
Match: GBRAP (Gamma-aminobutyric acid receptor-associated protein OS=Homo sapiens GN=GABARAP PE=1 SV=1) HSP 1 Score: 220.705 bits (561), Expect = 7.310e-68 Identity = 105/116 (90.52%), Postives = 112/116 (96.55%), Query Frame = 3
Query: 75 MRWEYKEEHAFERRRSEGEKIRRKYPDRVPVIVEKSPKAKIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNTIPPTSATMGALYQEHHEEDFFLYVAYSDESVYG 422
M++ YKEEH FE+RRSEGEKIR+KYPDRVPVIVEK+PKA+IGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNN IPPTSATMG LYQEHHEEDFFLY+AYSDESVYG
Sbjct: 1 MKFVYKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYG 116
The following BLAST results are available for this feature:
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