TCONS_00013891 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013891
Unique NameTCONS_00013891
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length981

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013891 ID=TCONS_00013891|Name=TCONS_00013891|organism=Clytia hemisphaerica|type=transcript|length=981bp
TTCGTGTCAAAATGTCAAGGCCCATAAACTGATTTTATCAAGTTGTCAGT
GAGCCTTTTGATGTGTCATATTGATTTATGATAGTGCATGGTGTTGAACA
TTTGAAAGTTGTGCTTATTCGGTAGTACAGTACGttgtttattgaaaaaa
aatactacgttggtttttgtttgattggttATTAAAATAGCACCCTTCAC
AATCAAAGGATGGCTTATTCCACCAAGATGAGCGAGACAGGAGGAGGAGG
AGTAGCTATGACTTCATCATCATTCAGTATGGATGCTACCACCACACTCA
GTCACCAAGACAACCATTATCAACAACAAGTTGCCATGTTGAAACAAAAA
CTTGATGATGAACATTCGAACTACAAGAGGAAAGTTCAAGCTTATCAGGA
CAGTCAGACNTTGCCATGTTGAAACAAAAACTTGATGATGAACATTCGAA
CTACAAGAGGAAAGTTCAAGCTTATCAAGACAGTCAGACAAGACAAGCTA
CTCTCATCCAGAAACTACAAAATAAGGTGCTCCAATACAAACGGAAAAAT
GGTGAACAAGACACTGTGTTGAACGAACGAACTCTGGAATGCGATAAATT
AAGGACTGAGGTTCAGAAACTGAACGACTCTAACAAAATTTACGAAGAGC
GTttaaaagaagatgaaaatgaccaaaataacAATTTGGAAGACTCGCTT
ATTCAgttggaagaacaaaaacaaagGAATACAAGCTTGCAACACGTGAA
TGATATGCTAAGAGATCAACTGGATCAAGCAACCACAGCAAACTCACAAC
TGACAGTCGAAGCACAAAGACTGGACGCTGATTGGACGAAAGCATGTCAA
GAGTTAGAAGCGAGAGAAGATGAAGAGGAAAGATATTTTACCGAAGAACA
TGAGAAAATTATTTCACTTTGGACGTCTATCACTTCCTTTCGTAAAAATT
TCCAAGAACTGAAGCTCGAAACTCAAAAGTA
Run BLAST on NCBI

transcript from alignment at sc0000174:477235..481872-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013891 ID=TCONS_00013891|Name=TCONS_00013891|organism=Clytia hemisphaerica|type=transcript|length=4638bp|location=Sequence derived from alignment at sc0000174:477235..481872- (Clytia hemisphaerica)
TTCGTGTCAAAATGTCAAGGCCCATAAACTGATTTTATCAAGTTGTCAGT
GAGCCTTTTGATGTGTCATATTGATTTATGATAGTGCATGGTGTTGAACA
TTTGAAAGTTGTGCTTATTCGGTAGTACAGTACGTTGTTTATTGAAAAAA
AATACTACGTTGGTTTTTGTTTGATTGGTTATTAAAATAGCACCCTTCAC
AATCAAAGGATGGCTTATTCCACCAAGGTTGGTAAAGTCTGACTTCTACA
GAGAGACATGGGCACTTGATTTTGAAAACGACCGTACGTTCGGCCAAAAT
CAGGTCTCTAAAATCGGACCCTTACAGTGCAGGAAAATTTGGCTGAAAAT
CGACCCCAATAGTGCAATTTTTCGAAATTTTTTCTCAAATTTTACACCCT
TACAGTGCACTTTCCAAAGTGCAAGAAACCTACCCTTAAGGGCCGCACTT
ACCTTGAGTGTCCCCCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNCCCCCCCCCCCCCGGGAGAGACATCTACCTTATAAAAGATAATTTTAG
TTATCCGTTATTTTTGTGGTAATCTTAAAGGGAAGGTTTTTCATTCGACT
CATGTACGGTCCAGTTAAGTCTCATTCTTTGACAGAATTTTGTTTCTTTA
TAAAGCAAGGGCTGTGATGTGATTTCTCAAACTTTTTCTTTCTCAACAAA
AATCTCTTTGTAACATGATCTTGTTATAAGTTGTCAGAAAGGGTGTTTAA
ATCTTACGAAAGACGGTTATAAACCAAATGATGACAGAAAATTGTTAATT
CAAAGATTTATTGATTTAAATCGATGCACGAGAATTAGTGGAGATTACTC
TTTTTGTTTTGAGTCTTCGAGATTTTTGACCTTTTTAAATCATATTTTTC
CAAAATCCTTTCGTCTTTTAAATTAATAGGTTTTGCCTTACTCTTTAAAT
TATGCTTGCAAAGATCATTTCGCTTTTATATGATCTGTGATTTTCTCCAA
TATCTTTATTACATACTCGCACATAACTTGAAAGAAGCTTCCAAATACAT
ATTTGGTAATTAAAGATAATTTGAATTGTACATTTAGAGACTAAGTGTAA
TAATTTGCATTGAATCCCATCGGAGGTGTGTTTAATTACATTTAAACACC
ATAGTCTGGTGTGCAATTTCATGTTTGATCACAAAAAGGGTAATCAGAGC
ACCATCGAAATTATTTATTAAATGGATTAAATGTAAAAAGCACTTGAACT
CTCTTCTCTATGATTGTTACACTAGCTGACAAGAGTTTTTGCAGCATTTT
CTCGTCTTCGGGAGAAAAAGAATTGTATTTTGTTTGAGCAGTACTATTCA
CTGATTTCCGAGTGTAAGGTTTTTTTTTACTTCTTGTTGTTTATTTTAGG
TTAATTTTTAGTCTTTTTTCTTTCCGACCTTTAGTGGCTTTCGTGTGCCG
TACTATTGTTTTTACGTTGTGTTTTTTACAAAAAATGGTGAATAGATGGA
CTTTTTTTAGTTCTGATTCCAATCACTTTATAAGTGGGAATCCTGCTTTG
CTGAACATGGCATTGAAATAAATACATAAGCTAATTCGATCATTATTGTC
ATATTTAAATACACGTTTTTTCATAAGCACATCTAAATTTTTTGAAGCCT
TTAGATATTCTTAAACATTTTCTTAATTTGCCCCATTTTGTGAGTATTTT
GGTCCATTTTCCTAAGGAATTGGTTGCTTTAGAGTCCGCAAAGCCTTAAA
ATGTTCTTAACTTGTTCTTATTTAACACCATCGCCATCGAAACCTTAAAA
TTTCTTATATAGTTTGTTCTTATAAAAAAGCGTGTAAATAATGATAGAAT
CACTACTTTCTGAGAATTTTCAGGGCTCTCGATTTTTATATTATATCATT
AAGAAATATTTATCGATCCATAGATGAGCGAGACAGGAGGAGGAGGAGTA
GCTATGACTTCATCATCATTCAGTATGGATGCTACCACCACACTCAGTCA
CCAAGACAACCATTATCAACAACAAGTTGCCATGTTGAAACAAAAACTTG
ATGATGAACATTCGAACTACAAGAGGAAAGTTCAAGCTTATCAGGACAGT
CAGACNTTGCCATGTTGAAACAAAAACTTGATGATGAACATTCGAACTAC
AAGAGGAAAGTTCAAGCTTATCAAGACAGTCAGACAAGACAAGCTACTCT
CATCCAGAAACTACAAAATAAGGTACATACCATTTTACAAAATAAGGCAT
TAGAAATTAATAAAAGCTTTAAAAGATGGATGAGAATAAATGGTTTTCTT
CTTTGAACCTTGAAACTTAACAAAATGTTATTTCTACCCTAGCCTGTTAG
ACGAAAACCGCTTTTTTATCGCGTAACAAAAAGCTTAATTGAAACTCGAT
ATGTCTATGTATTTTTCCACGTCCTCTGTGCCAATATTTGCCTAAATTAA
TGTCTTTGACTCCTATACTCCATTTTATTGTGTTTGGATTAGAAAAAAAA
AAATCGAAATGAGCGAAATAGAAATTGGATACATTTCTGCATGAAATCTG
AGGATTCTGAGATTTGCCTTTACTTTTATTGATAGCGTATCTGTATTTGA
ATTTTAAGAACTTTACTATTACTCTCTAGATTCCATTGAATTCTCTTTAT
GGTTCCTTTTCGGCATACACGTTTTTTATAAGAGCATCCAAAATTGTCAT
GTATCGATGAGTTTTAAGCCTTTTAAAAAAGTTTTTAAAATGTTCTTAAG
TACATATTTTAAGATGAGTTTTAATCCTAAAAATGTTCTTAGGTTCACCA
TTTTGTAATTATTTTTGTGGCAATATCCTCATAAATTGGGCATATCAGAT
TCCATAGCCTTAAAATGTTTATGAGTTATCCTTGATATTTTGGTCATCGA
GGCCTTTATCGTCGTTCACATGACTAAAGGTTAAATCTCAAAATTAGTAC
CTTGTAAAATTTAAAGTTTTACTGTGGTGGTCATCTTTGAGATTGAGATT
GACCTTTTTACATGTAGAGGAATAGTCAATGTTTTCATATGACAAAAAGA
CCAATCTCAAAGGCAGAACAAAATTGCGAGATTTCCAATTTACCAAGACA
CTTATTTTGAGATCTTTAGGCATGTGGACGACGTTATGTTCTTTCAAAAA
ACATGTACAGCATACATGTTTTTTGAAGGAACATAACGATAAGTTATGAA
GATTTTTGTTTTTCACGGGGGGATACTAAATAGTCATGACTTGTTTCCTA
AAATATTAAAATAAAAGATCGAGATCAGAAAATGGTAAATCTAAATGAAT
TAATTCTCTCTCACAGGTGCTCCAATACAAACGGAAAAATGGTGAACAAG
ACACTGTGTTGAACGAACGAACTCTGGAATGCGATAAATTAAGGACTGAG
GTATATGAATCTAATAACTCCCGTCCTCCTTATTTATTTCAGTTGTTAAG
AAGAAGCATGTTTTACTATATGCATTTCTCCCATCTCTTCTTCGTTCTCG
ATTTCGAGGCATCATATTGGGAACGACTGTAGGGACACCTGTATGAGTTC
GCTGTTAATTTAAGTTAAAAACTAAAAGGGATGACAACAGCTTTATTTTT
CATTGCTTTTTCCTGTTCGTATTACACAGAGACGCTTAAGTAACCTTTCT
TCTATTCTTAATAATCAGGTTCAGAAACTGAACGACTCTAACAAAATTTA
CGAAGAGCGTTTAAAAGAAGATGAAAATGACCAAAATAACAATTTGGAAG
ACTCGCTTATTCAGTTGGAAGAACAAAAACAAAGGTATTTTGAAAGGGGC
TTTTCTTAAAGTACTTGATTTCTTGTGTTGTAATTCAGATCAAAACAATA
ATCACCTCAAGTACAAAATGTGTTAAAAATATTAGGCAATAGGAATATTT
TTTTATTTCTTGGGCTCACGCAGGCTCACGTTGTAATTCTTGCTGTTTTA
CAGTATTTATCTTGTGGCAAATATTTAAGAGTTATTTTATTACTTAAGAT
GTTGTAACAGTCACATACTAAACATTAACAGAATTTTAGCACTTCGTTTT
GAATCTTCAGACGTTGTTCGTTATCACTTGTTCGGTTTTGTTGCAATAAT
ATAGTGGATCATTCATTTCATTGTAAGTTGAGCTGTAGAGAGAGATGACG
TGATTTTTTTTTCAAAATTTGTATTTGCAAAGCTTGACTGTTAACATTTT
CGTTCGTCATCGCAATCTTTTTTTGTAATCCAGGAATACAAGCTTGCAAC
ACGTGAATGATATGCTAAGAGATCAACTGGATCAAGCAACCACAGCAAAC
TCACAACTGACAGTCGAAGCACAAAGACTGGACGCTGATTGGACGAAAGC
ATGTCAAGAGTTAGAAGCGAGAGAAGATGAAGAGGAAAGATATTTTACCG
AAGAACATGAGAAAATTATTTCACTTTGGACGTCTATCACTTCCTTTCGT
AAAAATTTCCAAGAACTGAAGCTCGAAACTCAAAAGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007754XLOC_007754Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013891-exon-sc0000174-1575043694:481646..481872TCONS_00013891-exon-sc0000174-1575043694:481646..481872Clytia hemisphaericaexon
TCONS_00013891-exon-sc0000174-1575043694:479501..479799TCONS_00013891-exon-sc0000174-1575043694:479501..479799Clytia hemisphaericaexon
TCONS_00013891-exon-sc0000174-1575043694:478323..478406TCONS_00013891-exon-sc0000174-1575043694:478323..478406Clytia hemisphaericaexon
TCONS_00013891-exon-sc0000174-1575043694:477939..478054TCONS_00013891-exon-sc0000174-1575043694:477939..478054Clytia hemisphaericaexon
TCONS_00013891-exon-sc0000174-1575043694:477235..477489TCONS_00013891-exon-sc0000174-1575043694:477235..477489Clytia hemisphaericaexon
TCONS_00013891-exon-sc0000174-1510915933:481646..481872TCONS_00013891-exon-sc0000174-1510915933:481646..481872Clytia hemisphaericaexon
TCONS_00013891-exon-sc0000174-1510915933:479501..479799TCONS_00013891-exon-sc0000174-1510915933:479501..479799Clytia hemisphaericaexon
TCONS_00013891-exon-sc0000174-1510915933:478323..478406TCONS_00013891-exon-sc0000174-1510915933:478323..478406Clytia hemisphaericaexon
TCONS_00013891-exon-sc0000174-1510915933:477939..478054TCONS_00013891-exon-sc0000174-1510915933:477939..478054Clytia hemisphaericaexon
TCONS_00013891-exon-sc0000174-1510915933:477235..477489TCONS_00013891-exon-sc0000174-1510915933:477235..477489Clytia hemisphaericaexon
TCONS_00013891-exon-sc0000174-1491911889:481646..481872TCONS_00013891-exon-sc0000174-1491911889:481646..481872Clytia hemisphaericaexon
TCONS_00013891-exon-sc0000174-1491911889:479501..479799TCONS_00013891-exon-sc0000174-1491911889:479501..479799Clytia hemisphaericaexon
TCONS_00013891-exon-sc0000174-1491911889:478323..478406TCONS_00013891-exon-sc0000174-1491911889:478323..478406Clytia hemisphaericaexon
TCONS_00013891-exon-sc0000174-1491911889:477939..478054TCONS_00013891-exon-sc0000174-1491911889:477939..478054Clytia hemisphaericaexon
TCONS_00013891-exon-sc0000174-1491911889:477235..477489TCONS_00013891-exon-sc0000174-1491911889:477235..477489Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000174supercontigsc0000174:477235..481872 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.223569	0	0.996486	1.97273	110.855	74.5634	27.1809	18.8761	5.02496	4.48991	6.64005	3.56912	0	0.287143	0.725484	1.1127	1.43579	1.48134	0.956608	1.17375	1.80982	1.07773	0	1.66123	0	0	0.853984	0.697653	0.386851	0.313891
Blast
[Close]
BLAST of TCONS_00013891 vs. Swiss-Prot (Human)
Match: CROCC (Rootletin OS=Homo sapiens GN=CROCC PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 4.969e-23
Identity = 69/195 (35.38%), Postives = 115/195 (58.97%), Query Frame = 2 
Query:  419 LKQKLDDEHSNYKRKVQAYQDSQTRQATLIQKLQNKVLQYKRKNGEQDTVLNERTLECDKLRTEVQKLNDSNKIYEERLKXXXXXXXXXXXXSLIQLEEQKQRNTSLQHVNDMLRDQLDQATTANSQLTVEAQRLDADWTKACQXXXXXXXXXXXXXXXX--------XXKIISLWTSITSFRKNFQELKLETQK 979
            L+++L +E ++Y+RK+QAYQ+ Q RQA L+Q+LQ K+LQYK++  E +  L ER+ E ++     Q+L D+    +             LE +LI+LEE++QR+ SL  VN MLR+QLDQA +AN  L+ + +++  DWT+ C++     +   R   E         H +++ LW  +  FR+   E+K+ T++
Sbjct:  144 LRRQLQEEQASYRRKLQAYQEGQQRQAQLVQRLQGKILQYKKRCSELEQQLLERSGELEQ-----QRLRDTEHSQD-------------LESALIRLEEEQQRSASLAQVNAMLREQLDQAGSANQALSEDIRKVTNDWTR-CRKELEHREAAWRREEESFNAYFSNEHSRLLLLWRQVVGFRRLVSEVKMFTER 319
The following BLAST results are available for this feature:
BLAST of TCONS_00013891 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CROCC4.969e-2335.38Rootletin OS=Homo sapiens GN=CROCC PE=1 SV=1[more]
back to top