TCONS_00013890 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013890
Unique NameTCONS_00013890
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length923

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013890 ID=TCONS_00013890|Name=TCONS_00013890|organism=Clytia hemisphaerica|type=transcript|length=923bp
CAGAGCACCATCGAAATTATTTATTAAATGGATTAAATGTAAAAAGCACT
TGAACTCTCTTCTCTATGATTGTTACACTAGCTGACAAGAGTTTTTGCAG
CATTTTCTCGTCTTCGGGAGAAAAAGAATTGTATTTTGTTTGAGCAGTAC
TATTCACTGATTTCCGAGTATGAGCGAGACAGGAGGAGGAGGAGTAGCTA
TGACTTCATCATCATTCAGTATGGATGCTACCACCACACTCAGTCACCAA
GACAACCATTATCAACAACAAGTTGCCATGTTGAAACAAAAACTTGATGA
TGAACATTCGAACTACAAGAGGAAAGTTCAAGCTTATCAGGACAGTCAGA
CNTTGCCATGTTGAAACAAAAACTTGATGATGAACATTCGAACTACAAGA
GGAAAGTTCAAGCTTATCAAGACAGTCAGACAAGACAAGCTACTCTCATC
CAGAAACTACAAAATAAGGTGCTCCAATACAAACGGAAAAATGGTGAACA
AGACACTGTGTTGAACGAACGAACTCTGGAATGCGATAAATTAAGGACTG
AGGTTCAGAAACTGAACGACTCTAACAAAATTTACGAAGAGCGTttaaaa
gaagatgaaaatgaccaaaataacAATTTGGAAGACTCGCTTATTCAgtt
ggaagaacaaaaacaaagGAATACAAGCTTGCAACACGTGAATGATATGC
TAAGAGATCAACTGGATCAAGCAACCACAGCAAACTCACAACTGACAGTC
GAAGCACAAAGACTGGACGCTGATTGGACGAAAGCATGTCAAGAGTTAGA
AGCGAGAGAAGATGAAGAGGAAAGATATTTTACCGAAGAACATGAGAAAA
TTATTTCACTTTGGACGTCTATCACTTCCTTTCGTAAAAATTTCCAAGAA
CTGAAGCTCGAAACTCAAAAGTA
Run BLAST on NCBI

transcript from alignment at sc0000174:477235..480528-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013890 ID=TCONS_00013890|Name=TCONS_00013890|organism=Clytia hemisphaerica|type=transcript|length=3294bp|location=Sequence derived from alignment at sc0000174:477235..480528- (Clytia hemisphaerica)
CAGAGCACCATCGAAATTATTTATTAAATGGATTAAATGTAAAAAGCACT
TGAACTCTCTTCTCTATGATTGTTACACTAGCTGACAAGAGTTTTTGCAG
CATTTTCTCGTCTTCGGGAGAAAAAGAATTGTATTTTGTTTGAGCAGTAC
TATTCACTGATTTCCGAGTGTAAGGTTTTTTTTTACTTCTTGTTGTTTAT
TTTAGGTTAATTTTTAGTCTTTTTTCTTTCCGACCTTTAGTGGCTTTCGT
GTGCCGTACTATTGTTTTTACGTTGTGTTTTTTACAAAAAATGGTGAATA
GATGGACTTTTTTTAGTTCTGATTCCAATCACTTTATAAGTGGGAATCCT
GCTTTGCTGAACATGGCATTGAAATAAATACATAAGCTAATTCGATCATT
ATTGTCATATTTAAATACACGTTTTTTCATAAGCACATCTAAATTTTTTG
AAGCCTTTAGATATTCTTAAACATTTTCTTAATTTGCCCCATTTTGTGAG
TATTTTGGTCCATTTTCCTAAGGAATTGGTTGCTTTAGAGTCCGCAAAGC
CTTAAAATGTTCTTAACTTGTTCTTATTTAACACCATCGCCATCGAAACC
TTAAAATTTCTTATATAGTTTGTTCTTATAAAAAAGCGTGTAAATAATGA
TAGAATCACTACTTTCTGAGAATTTTCAGGGCTCTCGATTTTTATATTAT
ATCATTAAGAAATATTTATCGATCCATAGATGAGCGAGACAGGAGGAGGA
GGAGTAGCTATGACTTCATCATCATTCAGTATGGATGCTACCACCACACT
CAGTCACCAAGACAACCATTATCAACAACAAGTTGCCATGTTGAAACAAA
AACTTGATGATGAACATTCGAACTACAAGAGGAAAGTTCAAGCTTATCAG
GACAGTCAGACNTTGCCATGTTGAAACAAAAACTTGATGATGAACATTCG
AACTACAAGAGGAAAGTTCAAGCTTATCAAGACAGTCAGACAAGACAAGC
TACTCTCATCCAGAAACTACAAAATAAGGTACATACCATTTTACAAAATA
AGGCATTAGAAATTAATAAAAGCTTTAAAAGATGGATGAGAATAAATGGT
TTTCTTCTTTGAACCTTGAAACTTAACAAAATGTTATTTCTACCCTAGCC
TGTTAGACGAAAACCGCTTTTTTATCGCGTAACAAAAAGCTTAATTGAAA
CTCGATATGTCTATGTATTTTTCCACGTCCTCTGTGCCAATATTTGCCTA
AATTAATGTCTTTGACTCCTATACTCCATTTTATTGTGTTTGGATTAGAA
AAAAAAAAATCGAAATGAGCGAAATAGAAATTGGATACATTTCTGCATGA
AATCTGAGGATTCTGAGATTTGCCTTTACTTTTATTGATAGCGTATCTGT
ATTTGAATTTTAAGAACTTTACTATTACTCTCTAGATTCCATTGAATTCT
CTTTATGGTTCCTTTTCGGCATACACGTTTTTTATAAGAGCATCCAAAAT
TGTCATGTATCGATGAGTTTTAAGCCTTTTAAAAAAGTTTTTAAAATGTT
CTTAAGTACATATTTTAAGATGAGTTTTAATCCTAAAAATGTTCTTAGGT
TCACCATTTTGTAATTATTTTTGTGGCAATATCCTCATAAATTGGGCATA
TCAGATTCCATAGCCTTAAAATGTTTATGAGTTATCCTTGATATTTTGGT
CATCGAGGCCTTTATCGTCGTTCACATGACTAAAGGTTAAATCTCAAAAT
TAGTACCTTGTAAAATTTAAAGTTTTACTGTGGTGGTCATCTTTGAGATT
GAGATTGACCTTTTTACATGTAGAGGAATAGTCAATGTTTTCATATGACA
AAAAGACCAATCTCAAAGGCAGAACAAAATTGCGAGATTTCCAATTTACC
AAGACACTTATTTTGAGATCTTTAGGCATGTGGACGACGTTATGTTCTTT
CAAAAAACATGTACAGCATACATGTTTTTTGAAGGAACATAACGATAAGT
TATGAAGATTTTTGTTTTTCACGGGGGGATACTAAATAGTCATGACTTGT
TTCCTAAAATATTAAAATAAAAGATCGAGATCAGAAAATGGTAAATCTAA
ATGAATTAATTCTCTCTCACAGGTGCTCCAATACAAACGGAAAAATGGTG
AACAAGACACTGTGTTGAACGAACGAACTCTGGAATGCGATAAATTAAGG
ACTGAGGTATATGAATCTAATAACTCCCGTCCTCCTTATTTATTTCAGTT
GTTAAGAAGAAGCATGTTTTACTATATGCATTTCTCCCATCTCTTCTTCG
TTCTCGATTTCGAGGCATCATATTGGGAACGACTGTAGGGACACCTGTAT
GAGTTCGCTGTTAATTTAAGTTAAAAACTAAAAGGGATGACAACAGCTTT
ATTTTTCATTGCTTTTTCCTGTTCGTATTACACAGAGACGCTTAAGTAAC
CTTTCTTCTATTCTTAATAATCAGGTTCAGAAACTGAACGACTCTAACAA
AATTTACGAAGAGCGTTTAAAAGAAGATGAAAATGACCAAAATAACAATT
TGGAAGACTCGCTTATTCAGTTGGAAGAACAAAAACAAAGGTATTTTGAA
AGGGGCTTTTCTTAAAGTACTTGATTTCTTGTGTTGTAATTCAGATCAAA
ACAATAATCACCTCAAGTACAAAATGTGTTAAAAATATTAGGCAATAGGA
ATATTTTTTTATTTCTTGGGCTCACGCAGGCTCACGTTGTAATTCTTGCT
GTTTTACAGTATTTATCTTGTGGCAAATATTTAAGAGTTATTTTATTACT
TAAGATGTTGTAACAGTCACATACTAAACATTAACAGAATTTTAGCACTT
CGTTTTGAATCTTCAGACGTTGTTCGTTATCACTTGTTCGGTTTTGTTGC
AATAATATAGTGGATCATTCATTTCATTGTAAGTTGAGCTGTAGAGAGAG
ATGACGTGATTTTTTTTTCAAAATTTGTATTTGCAAAGCTTGACTGTTAA
CATTTTCGTTCGTCATCGCAATCTTTTTTTGTAATCCAGGAATACAAGCT
TGCAACACGTGAATGATATGCTAAGAGATCAACTGGATCAAGCAACCACA
GCAAACTCACAACTGACAGTCGAAGCACAAAGACTGGACGCTGATTGGAC
GAAAGCATGTCAAGAGTTAGAAGCGAGAGAAGATGAAGAGGAAAGATATT
TTACCGAAGAACATGAGAAAATTATTTCACTTTGGACGTCTATCACTTCC
TTTCGTAAAAATTTCCAAGAACTGAAGCTCGAAACTCAAAAGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007754XLOC_007754Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013890-exon-sc0000174-1575043694:480360..480528TCONS_00013890-exon-sc0000174-1575043694:480360..480528Clytia hemisphaericaexon
TCONS_00013890-exon-sc0000174-1575043694:479501..479799TCONS_00013890-exon-sc0000174-1575043694:479501..479799Clytia hemisphaericaexon
TCONS_00013890-exon-sc0000174-1575043694:478323..478406TCONS_00013890-exon-sc0000174-1575043694:478323..478406Clytia hemisphaericaexon
TCONS_00013890-exon-sc0000174-1575043694:477939..478054TCONS_00013890-exon-sc0000174-1575043694:477939..478054Clytia hemisphaericaexon
TCONS_00013890-exon-sc0000174-1575043694:477235..477489TCONS_00013890-exon-sc0000174-1575043694:477235..477489Clytia hemisphaericaexon
TCONS_00013890-exon-sc0000174-1510915933:480360..480528TCONS_00013890-exon-sc0000174-1510915933:480360..480528Clytia hemisphaericaexon
TCONS_00013890-exon-sc0000174-1510915933:479501..479799TCONS_00013890-exon-sc0000174-1510915933:479501..479799Clytia hemisphaericaexon
TCONS_00013890-exon-sc0000174-1510915933:478323..478406TCONS_00013890-exon-sc0000174-1510915933:478323..478406Clytia hemisphaericaexon
TCONS_00013890-exon-sc0000174-1510915933:477939..478054TCONS_00013890-exon-sc0000174-1510915933:477939..478054Clytia hemisphaericaexon
TCONS_00013890-exon-sc0000174-1510915933:477235..477489TCONS_00013890-exon-sc0000174-1510915933:477235..477489Clytia hemisphaericaexon
TCONS_00013890-exon-sc0000174-1491911889:480360..480528TCONS_00013890-exon-sc0000174-1491911889:480360..480528Clytia hemisphaericaexon
TCONS_00013890-exon-sc0000174-1491911889:479501..479799TCONS_00013890-exon-sc0000174-1491911889:479501..479799Clytia hemisphaericaexon
TCONS_00013890-exon-sc0000174-1491911889:478323..478406TCONS_00013890-exon-sc0000174-1491911889:478323..478406Clytia hemisphaericaexon
TCONS_00013890-exon-sc0000174-1491911889:477939..478054TCONS_00013890-exon-sc0000174-1491911889:477939..478054Clytia hemisphaericaexon
TCONS_00013890-exon-sc0000174-1491911889:477235..477489TCONS_00013890-exon-sc0000174-1491911889:477235..477489Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000174supercontigsc0000174:477235..480528 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.576528	0.64141	0.21847	1.40544	541.616	374.908	109.046	125.923	31.4912	51.3978	14.6618	18.2695	0.773801	0.73848	0.358211	0	0.768896	0.432343	0.378281	0	1.52346	1.84263	2.06427	0.978736	1.65034	0	0.86979	0.571561	0	0.506
Blast
[Close]
BLAST of TCONS_00013890 vs. Swiss-Prot (Human)
Match: CROCC (Rootletin OS=Homo sapiens GN=CROCC PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 4.084e-23
Identity = 69/195 (35.38%), Postives = 115/195 (58.97%), Query Frame = 1 
Query:  361 LKQKLDDEHSNYKRKVQAYQDSQTRQATLIQKLQNKVLQYKRKNGEQDTVLNERTLECDKLRTEVQKLNDSNKIYEERLKXXXXXXXXXXXXSLIQLEEQKQRNTSLQHVNDMLRDQLDQATTANSQLTVEAQRLDADWTKACQXXXXXXXXXXXXXXXX--------XXKIISLWTSITSFRKNFQELKLETQK 921
            L+++L +E ++Y+RK+QAYQ+ Q RQA L+Q+LQ K+LQYK++  E +  L ER+ E ++     Q+L D+    +             LE +LI+LEE++QR+ SL  VN MLR+QLDQA +AN  L+ + +++  DWT+ C++     +   R   E         H +++ LW  +  FR+   E+K+ T++
Sbjct:  144 LRRQLQEEQASYRRKLQAYQEGQQRQAQLVQRLQGKILQYKKRCSELEQQLLERSGELEQ-----QRLRDTEHSQD-------------LESALIRLEEEQQRSASLAQVNAMLREQLDQAGSANQALSEDIRKVTNDWTR-CRKELEHREAAWRREEESFNAYFSNEHSRLLLLWRQVVGFRRLVSEVKMFTER 319
The following BLAST results are available for this feature:
BLAST of TCONS_00013890 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CROCC4.084e-2335.38Rootletin OS=Homo sapiens GN=CROCC PE=1 SV=1[more]
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