TCONS_00013888 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00013888
Unique Name	TCONS_00013888
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2749

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000174:460364..465941-

transcript sequence

>TCONS_00013888 ID=TCONS_00013888|Name=TCONS_00013888|organism=Clytia hemisphaerica|type=transcript|length=2749bp
CACTGGCCTGTTAGATTGAAATGTGTAGTTCACAAACTTGTGAAGACTTT
TTGAATCGGCTAGATGCTATGGATGGCAGACTGAATGATGCAGAACACAA
ATTTCAGCGTTCTTTTGATGTTGTGAAAGATACTGTTCTCATGGTTTTTA
ATAACATAACACCTTCCCCAAGTCGCTCCAGTCCGCCAAAACGAAGGACG
CCTTTCGGCCGCCacaagatgacgtcatcgatgcaAGAAAACGATTCAGA
GAGTGAAACACAACTCTCGACCACTTCTCATCCTGATAGCTCCGGTGAGA
GCAGTAAGTTTGACATGACCAGTGAGATTGATCCTGAAACCATCCGAAGT
GGATTACGTGATTTCGCACAAAAGTTGAAAGACTTGGAACGCGAACGGGA
CGAGGCGCACGCGAAGATTGGCGTCATGCAAAGACAGATCGCAACCCTAG
AGAAAGATCGTAATGAATGCGAGGAAAGAGTTCAAGCTCTTCAAAAGAAT
TTGGAAGATACTGAGGAGGGCAAACGTGGTGCTGACGGTCGTTTGAGCAG
CGCACAAACAGCCTTGATGCTACAAGAGGAAACCATTCGACGTCTCGAAC
GCGAACGAAAAGTTTTGAACGACAAACTCCTCACGCTCGAATCAAGCATC
GCTCAAGCTGAAGCCGACAAACGTGTTTTCCGTGAGAAACTCGGTAAAAG
TCAGAAAGCAGAGTCACGCTCTGAGAAAGAGAGAGATGCCATGCGCCAAC
AGATTGATAATGCTGAATCACGTGTTACTAGAATGGAGTTAAAGAAAAAA
TCTCTCGAGGGTGATTTAGATCGTGTCCGTCAGCAATTAGCAGATTCGGA
GACTGAGAAACAAGGCATGCGACATCGAATCGAACAATTGCAACGCACGC
AACAAGATCTCGAACAAAAAGTCACCACTACTCAAATCACCATTGACCGT
TTGAACACATCATTGACGAAGACATCAGACCAAGAGAAGATGTTCAAAGA
GAAAGTGAACGAACTTTCCATCAACTTAAGTGAAACAAACTCCACCACTC
AATCTCTCCATGAGAAGCTTCAACAAACGCAACGTGCTCTCCTCAACACT
GAACAAGAAAACCAAGCACTTCAAGAGAAAATAGAAACGTTGAAATCGAA
ACAATACGAAAGCAAACGAAATCTTGAGTCTTGCAGTGAAACTATTTCAG
CATTGAAATCAAATGTTTCAGATGTTGAGGCCAAACGTTTGGAACTGGAA
AACGAGTTACGTTTATCAGCACAAAACATCCAAAAGAAATCGAATTCAGA
ATCTGAACTGACCGATCGGATCACTCGCGCTCAGGAGGAGAAACGTAACC
TACAAGACCGCTTAGCACAACAACAACGATTGTTATCACAGACCGAGCAA
GAAAAACGAGAAATTGAACGAAATGTTTTAAAAGCtgacaaagaaaagaa
attacTTAAAGCCAACATTGAGAGGGTTGAACGAGATAAGCAATTTATTG
AAGATGAATTGAACCGATCACGCACCAACAAGACGGAAATCGAAAGAACT
ATCCAATCCAATGAACAAAATGCAAACGAGTTGCGATTGCAAGTCAACCA
ACTCCAACAAATCTTagatgaaaaagaacaaaatcaGTCACAAAAATTGA
TGGAAATTACATCTCGTCATCGTGACGAACTCGAGCGCGAAGCTGAACGC
AACAAAAACGCACAAGTACATCTTGAACGCACTCACGCTGCACGTGAACG
CGCACACAAACAACGCACGCGTGGTCTGGAAGAACAAGTCAACACGCTGA
AAGATCAGTTATCAAAAGAAATGCAACAAAAGCAATCTTTCATCAACCGA
ACGAGTCAAAAGAATGGAGAAATGAGGGATATTCGTTCGAAACTTTCTAC
CTCGCTCAATGAAGTTTCGAGTGGAGCTGATTTACGCGTTCTCGAACGAG
AATCACAAAAGTTGGACGAAACAGTCGATTCCTTCGAAAAATCGGGTTTC
ATAAGCTCAACGCCGTTTCCAAGGAGAGCGAAATCTGTTTCACCAATCAC
AAGAAGTTTATCTTCGGAAAAATACCTGAATGGTAACACAATATCACCGT
CACACGATTCGACTGTCACGCGTTTCGCAACTCCGCTAACGGATACACGC
AAAGGACCGTCTGCTAGCTATGTTTCTCCTATACGCAAAAGTCGAAAATA
TTAAAACCATCAAATAGGTTTTACTAAATTTTAGCAAAGTGTAcatatta
tgaatagaaagtTTTACGTGTAAAATCTGATTTTTATATACTAATAGAAT
AATTTAAATGGTTTGTCAAATATACATACATtacatgattttatttttat
caataaggataaaacaaaatatttcagtgggtttttaatttagaattttt
ttatgaaataaaaatttaatacaTGCTTATAAATTTGAGAGAAGGGTACA
ATAACTTGAAGAAATCGATTGCAAGAATACGTAAAACGAACGGTATCAAA
TTTTAGTGTTATTTTTACGATTCGTGACTaggttatttttattattatat
acaCGATGCTAAactattatttcaaattgtaTATTAGGTAGATCGATTtc
ttattctttttatttttattatttacttCGTGTGTGAAGAAATAAGTGCT
GATACAAAATCAACTAAATTTATACTCTAATCATTTCCAAAGGACTACAA
CTCAAGCACACAAAAAGATATTAATATTAACACTTAACAAAGAATTgac

Run BLAST on NCBI

transcript from alignment at sc0000174:460364..465941-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00013888 ID=TCONS_00013888|Name=TCONS_00013888|organism=Clytia hemisphaerica|type=transcript|length=5578bp|location=Sequence derived from alignment at sc0000174:460364..465941- (Clytia hemisphaerica)
CACTGGCCTGTTAGATTGAAATGTGTAGTTCACAAACTTGTGAAGACTTT
TTGAATCGGCTAGATGCTATGGATGGCAGACTGAATGATGCAGAACACAA
ATTTCAGCGTTCTTTTGATGTTGTGAAAGATACTGTTCTCATGGTTTTTA
ATAACATGTATGATTTTGATTGGCCTGTTTTGAAGGAGCAGAGGAACTTT
ATCCGCCGTAATTAGTTTTTGGTGCGAGTCACCAAGCGCTAAGGGCTAGG
TTTATATAGATCGAGGAGAAAGTTTATCTACAGCATGGTGTTTTTTTCTA
TGACTTGAACTAATTCACACTTAAACTTCCCAGCTAAATTGAGCTTTGAT
ACTAAGGATTCCGTCCGTCCATTCTTTCTACAGAACACCTTCCCCAAGTC
GCTCCAGTCCGCCAAAACGAAGGACGCCTTTCGGCCGCCACAAGATGACG
TCATCGATGCAAGAAAACGATTCAGAGAGTGAAACACAACTCTCGACCAC
TTCTCATCCTGATAGCTCCGGTAAGTACTGAGTACGAAATTTGTTTTAGC
ATTTTTCTAGCTGCAAAGTTTCCCATGTTTACAAGGAAGAGGTTAGAATA
TTTATGGTTTGTGCTCGGTGCGTTTGACCAGTTCAACTACATTTTAACCT
TTTCTGTCGTTCATCTGTTATGATTTTTTCTCTGTGCAAAAATGTTTTTT
TCTCGAAATATTATATCTTTATTTTCTTACTACAGGTGAGAGCAGTAAGT
TTGACATGACCAGTGAGATTGATCCTGAAACCATCCGAAGTGGATTACGT
GATTTCGCACAAAAGTTGAAAGACTTGGAACGCGAACGGGACGAGGCGCA
CGCGAAGATTGGCGTCATGCAAAGACAGATCGCAACCCTAGAGAAAGATC
GTAATGAATGCGAGGAAAGAGTTCAAGCTCTTCAAAAGAATTTGGAAGAT
ACTGAGGAGGGTATGTCTAGCGAGTTCGTTTTCAAACAGAGATGAATGAT
TGAATTAAAGATTCGACAAGATAAAAAATACAGTGCTCTTCCGAATTTTC
CTTTTAATTANTCTAGCAAATTTGCTTTCAAACAGAGATGAATGATTGAA
TTAAAGATTCTACAAAATCGAAAATGAACTGCTCTTCTGAATTTATTCAT
GGTTTTCTTTTAATTAAGATGCAGTGTTTGTCGCATCGCTGCGCTAATCA
AAAACAACCATTTGCGTTCAAAATAAGTAGTATAGATGCTAGTTACTGTC
GACAACATATCATTAAACTAAATTCTCAATGATTTTATTCTTTGCAGGCA
AACGTGGTGCTGACGGTCGTTTGAGCAGCGCACAAACAGCCTTGATGCTA
CAAGAGGAAACCATTCGACGTCTCGAACGCGAACGAAAAGTTTTGAACGA
CAAACTCCTCACGCTCGAATCAAGCATCGCTCAAGCTGAAGCCGACAAAC
GTGTTTTCCGTGAGAAACTCGGTAAAAGTCAGAAAGCAGAGTCACGCTCT
GAGAAAGAGAGAGATGCCATGCGCCAACAGATTGATAATGCTGAATCACG
TGTTACTAGAATGGAGTTAAAGAAAAAATCTCTCGAGGGTAAAAACGGAC
TTGAAACTTATGTACTTTATTACATTACTGAAAAACTTACCAGTAGACTA
GCCTTAATGCGTAACCTCTCTCCCGTCAATTTGGAAAGCTTCGAACTTGA
AATTCGAACAGACTTTTCATCTAATATAACTGAAAATCAAATAATGGTTA
CAGTATCTATGACGAACAGCCATCAAATGATAATGATAAAGATATCTCTT
CCTTCCATTCATTTCCATTCCCACTCACTTCACTTTCATATTTAAATTTT
CAGGTGATTTAGATCGTGTCCGTCAGCAATTAGCAGATTCGGAGACTGAG
AAACAAGGCATGCGACATCGAATCGAACAATTGCAACGCACGCAACAAGA
TCTCGAACAAAAAGTCACCACTACTCAAATCACCGTATGTATAGTAGACA
ACAATTTCTCAAAACTCTATAATGTCGATAGTATGCTTTCTTGTCCCTTT
AGCTCACAAACCCTTGTACTGTAAATAGTCGATACTCGAACTCATAACAA
CTTGAGGAAATTTGCCTTTATATGGGAAGGTATTTTCAGGTGAGATGGAG
TATCTTTCAAAGTCGATTTCTTTGGTTCCACTTTGTTGTACTCGCTGGCC
AGACTCGAAAAGTAACAATATTCGTTTTACGATCTTCAAATTAGGATTTT
CTTTTCCTTCCTGTAGATTGACCGTTTGAACACATCATTGACGAAGACAT
CAGACCAAGAGAAGATGTTCAAAGAGAAAGTGAACGAACTTTCCATCAAC
TTAAGTGAAACAAACTCCACCACTCAATCTCTCCATGAGAAGCTTCAACA
AACGCAACGTGCTCTCCTCAACACTGAACAAGAAAACCAAGCACTTCAAG
AGAAAATAGAAACGTTGAAATCGAAACAATACGAAAGCAAACGAAATCTT
GAGTCTTGCAGTGAAACTATTTCAGCATTGAAATCAAATGTTTCAGATGT
TGAGGTATGTACATACAACCTATCATTTGCTGGTCTGCTGGCATCCGCTA
AAAAATTCTTATAGACTCCCTTAGGTTTTTCAGAGCTTTGTTACTAATGA
GACTAATTCCCCGGTGCTTTTAGATTTGCCATCTCGAATTTTCTAGCTCA
GATTCTAATTGTTCTTGAAGTTTTTTATATACACTCAAATTACTAGGCTG
CATCTCTTTTCGTAGTATAACCAAACCTGATCCTATTGAATCAGTAGATG
CTTTAAGTGACGTTTAATTGGAGTTCTGAGCTAAGCTATCTTCTTTTTTT
TAATAACAGGCCAAACGTTTGGAACTGGAAAACGAGTTACGTTTATCAGC
ACAAAACATCCAAAAGAAATCGAATTCAGAATCTGAACTGACCGATCGGA
TCACTCGCGCTCAGGTAAATAACAATCTATGTCTTTCTATGGCAAACTTC
ATGGCATGAACCCCCCCCCCAGCCCGCAGGGGGGGTCTACAACCAAAATC
TTCCTGAAAAAGGCCGGGGGCTGGATTTTTTTTAAATTTCAGGGGGTACC
TATGATCTCTGGGGGTACCTAACTTTTATGCAGTAAGGTCTGGGGGCTTG
GGAACTATATCTTGCTTTTATCTAACTATCATTATTCTTTTTAATTGTAA
AAATATACAATTTTTTCATTTCTTGACATACTGTATACTCAAGTCACAGG
GGGTACCAATCAAATGGGGTACCTACTAACGTCTGTTGTTTGGGGGTACC
TAAAATTCAGAGGGTACCTATTTTCTTAGGGGTACCTAAACGCCTGGTCC
ATGCCATGAAACTTTTTGATATCAAGCGATCCTCAGAATGCAAATGTGTA
AACGTCACCAAAAGTTGCCTTCTGTATATGAAGCAGTTATAATTCACAAT
GTTTTGTTTTGCGTTTTAGGAGGAGAAACGTAACCTACAAGACCGCTTAG
CACAACAACAACGATTGTTATCACAGACCGAGCAAGAAAAACGAGAAATT
GAACGAAATGTTTTAAAAGCTGACAAAGAAAAGAAATTACTTAAAGCCAA
CATTGAGAGGGTGAGGAATTTTACTGGTCAACACTTTTCAATTTTCAACC
CTAGGTTCGGGAAAAATGACGACTAATTTTGAAGACTTTAAAAATCCAAT
TTCAAAAAAATTGTTTCCTTCTTAAACTCAGAAGCTTGGGTTGACCTCTT
GATGTTTCAAGATATTTTCCAATCAAGTTTCTTTCCGCAATTCTTACAGG
TTGAACGAGATAAGCAATTTATTGAAGATGAATTGAACCGATCACGCACC
AACAAGACGGAAATCGAAAGAACTATCCAATCCAATGAACAAAATGCAAA
CGAGTTGCGATTGCAAGTCAACCAACTCCAACAAATCTTAGATGAAAAAG
AACAAAATCAGTCACAAAAGTACGTTTATACAACTCTATTTCAGACTTTG
ACCTCGTTTTGTTTTCATAGCTGAATAGAAATTCAGGAAGATACAACATA
GCCAACTCAAATGTTTGTGTGAAATCAAGTGCGTATTACTTATAGGTAAT
GTACTTCCCAGTTTTTCTCAAAGGTAACGAATCGAGTGGGAATTGAACCC
ACGACCTCTCGCTTGCCGGGCGATTGCTCTCCCGACTGCGCTATCGGTTC
GTTGCTATTACACTAGTTCGTAGTAGACGAGGGGAGCGACGTGCTCAATG
TTCACCATCCGGTACCTGAATTCTACGAATCAATGTAATTGCCACGAACT
GAGACACAGCTAGTGTCCAATCTCCAAATCCCAAATGTTTGTAATCATGT
ATTCTTCTAGTGACGGATTTGATCTTATATACGGCTGTCAGCAGCTTTGA
ATCAAGTCCCCTTCTTTGCGCACTGCTTTTCACACCCCTTGACCTTCAAA
TAAAACCTTTTCATTAACTTTCAGATTGATGGAAATTACATCTCGTCATC
GTGACGAACTCGAGCGCGAAGCTGAACGCAACAAAAACGCACAAGTACAT
CTTGAACGCACTCACGCTGCACGTGAACGCGCACACAAACAACGCACGCG
TGGTCTGGAAGAACAAGTCAACACGCTGAAAGATCAGTTATCAAAAGAAA
TGCAACAAAAGCAATCTTTCATCAACCGAACGAGTCAAAAGAATGGAGAA
ATGAGGGATATTCGTTCGAAACTTTCTACCTCGCTCAATGAAGTTTCGAG
TGGAGCTGATTTACGCGTTCTCGAACGAGAATCACAAAAGTTGGACGAAA
CAGTCGATTCCTTCGAAAAATCGGGTTTCATAAGCTCAACGCCGTTTCCA
AGGAGAGCGAAATCTGTTTCACCAATCACAAGAAGTTTATCTTCGGAAAA
ATACCTGAATGGTAACACAATATCACCGTCACACGATTCGACTGTCACGC
GTTTCGCAACTCCGCTAACGGATACACGCAAAGGACCGTCTGCTAGCTAT
GTTTCTCCTATACGCAAAAGTCGAAAATATTAAAACCATCAAATAGGTTT
TACTAAATTTTAGCAAAGTGTACATATTATGAATAGAAAGTTTTACGTGT
AAAATCTGATTTTTATATACTAATAGAATAATTTAAATGGTTTGTCAAAT
ATACATACATTACATGATTTTATTTTTATCAATAAGGATAAAACAAAATA
TTTCAGTGGGTTTTTAATTTAGAATTTTTTTATGAAATAAAAATTTAATA
CATGCTTATAAATTTGAGAGAAGGGTACAATAACTTGAAGAAATCGATTG
CAAGAATACGTAAAACGAACGGTATCAAATTTTAGTGTTATTTTTACGAT
TCGTGACTAGGTTATTTTTATTATTATATACACGATGCTAAACTATTATT
TCAAATTGTATATTAGGTAGATCGATTTCTTATTCTTTTTATTTTTATTA
TTTACTTCGTGTGTGAAGAAATAAGTGCTGATACAAAATCAACTAAATTT
ATACTCTAATCATTTCCAAAGGACTACAACTCAAGCACACAAAAAGATAT
TAATATTAACACTTAACAAAGAATTGAC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_007753	XLOC_007753	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000174	supercontig	sc0000174:460364..465941 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.80296	1.44113	2.19824	2.99836	100.499	52.1189	32.948	35.0387	21.5016	16.6845	11.2782	11.8107	5.39962	4.68387	4.93001	6.41584	5.7305	5.64989	1.89485	1.53583	4.12568	6.0419	7.63995	6.04187	4.59166	6.18135	6.40786	8.07647	3.86335	4.48175

Blast

[Close]

BLAST of TCONS_00013888 vs. Swiss-Prot (Human)
Match: CROCC (Rootletin OS=Homo sapiens GN=CROCC PE=1 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 5.744e-64
Identity = 183/503 (36.38%), Postives = 312/503 (62.03%), Query Frame = 3

Query:  318 TSEIDPETIRSGLRDFAQKLKDLERERDEAHAKIGVMQRQIATLEKDRNECEERVQALQKNLEDTEEGKRGADGRLSSAQTALMLQEETIRRLERERKVLNDKLLTLESSIAQAEADKRVFREKLGKSQKAESRSEKERDAMRQQIDNAESRVTRMELKKKSLEGDLDRVRQQLADSETEKQGMRHRIEQLQRTQQDLEQKVTTTQITIDRLNTSLTKTSDQEKMFKEKVNELSINLSETNSTTQSLHEKLQQTQRALLNTEQENQALQEKIETLKSKQYESKRNLESCSETISALKSNVSDVEAKRLELENELRLSAQNIQKKSNSESELTDRITRAQEEKXXXXXXXXXXXXXXXXTEQEKREIERNVXXXXXXXXXXXXNIERVERDKQFIEDELNRSRTNKTEIERTIQSNEQNANELRLQVNQLQQILDEKEQNQSQKLMEI-TSRHRDELEREAERNKNAQVHLERTHAARERAHKQRTRGLEEQVNTLKDQLSKEM 1823
            + ++DPE +R  LR+F Q+L+  +RERDE   +   + RQ+A +E +R+    R + LQK + ++EE +R  DGRLS  Q  L LQEE++RR ERER+   D++ TLE S+   E++ R  +EK+ K +  E++ E ++  +++ +D +ESR  ++EL+++SLEG+L R R  L+D E + Q ++ R++ LQR   D E K  T Q+T++RLN +L K  + E   ++KV  L+  L++++++  S  +K    Q+AL   E + Q LQE+++  +    E+++   S  E +  L+  V+D+E +R+E E +L+   + ++++   E+   + + + Q+E+R LQ+RL   QR L+Q E EKRE+ER+ L+ +K++  L+  +++VER+K    ++  R    K  ++RT+   E    E + Q+ QL+  +   EQ+ S   +E+   + + EL++E ER ++AQ   ERT  ARERAH+QR RGLEEQV+TLK QL +E+
Sbjct: 1499 SPDLDPEAVRGALREFLQELRSAQRERDELRTQTSALNRQLAEMEAERDSATSRARQLQKAVAESEEARRSVDGRLSGVQAELALQEESVRRSERERRATLDQVATLERSLQATESELRASQEKISKMKANETKLEGDKRRLKEVLDASESRTVKLELQRRSLEGELQRSRLGLSDREAQAQALQDRVDSLQRQVADSEVKAGTLQLTVERLNGALAKVEESEGALRDKVRGLTEALAQSSASLNSTRDKNLHLQKALTACEHDRQVLQERLDAARQALSEARKQSSSLGEQVQTLRGEVADLELQRVEAEGQLQQLREVLRQRQEGEAAALNTVQKLQDERRLLQERLGSLQRALAQLEAEKREVERSALRLEKDRVALRRTLDKVEREKLRSHEDTVRLSAEKGRLDRTLTGAELELAEAQRQIQQLEAQVVVLEQSHSPAQLEVDAQQQQLELQQEVERLRSAQAQTERTLEARERAHRQRVRGLEEQVSTLKGQLQQEL 2001

The following BLAST results are available for this feature:

BLAST of TCONS_00013888 vs. Swiss-Prot (Human)

BLAST of TCONS_00013888 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
CROCC	5.744e-64	36.38	Rootletin OS=Homo sapiens GN=CROCC PE=1 SV=1	[more]

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TCONS_00013888 (transcript) - C. hemisphaerica