TCONS_00013855 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00013855
Unique Name	TCONS_00013855
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	685

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000174:531168..535986+

transcript sequence

>TCONS_00013855 ID=TCONS_00013855|Name=TCONS_00013855|organism=Clytia hemisphaerica|type=transcript|length=685bp
AGAAGTattaataaaacaaatgatgattaattttggaaaatggtGTTTTG
GAGTTGTATGTTTTATCTGTCTATTGGTGGTGATTAGGTGTTCTTCACAA
CGATTTGATGATAATCTTCGATATGATATTTCCTGGAATGGTCCGCTCAC
AGAACAGACTGAACCAGGAAGCCACCATGAGAGAGTAATGATTACTACCA
AGGACAATGAAAAATACCAGTGTCTTATCCCACAACTCAAGACAGAAGCT
GAGGATTTTGATATTGATTTTGGGCCAGCACCTGAGGTTTTGTTGTCAGA
CGTCTTAGAAGCCACTCCAAAGAAATGTTCTTATAGATTGGAACCATATT
GGACGTATGAGGTATGCCATGGACAATCCGTTATTCAATTCCACGAAGAA
AAGGATAAGGATGGGggTATCAAACGTGACGAATATATTCTGGGTAAAAT
GAGCAATGAACTGTTGCAAGAACTTTTAAAACGAGCCTCGTCGGACTCAA
GCTCAAACGAAAACAAGAAAAAGATACCAACGAAGAAGATCGAAGGGCAA
GAAACGCCCTACTACAGTATGGAAATGACAGATGGTACACCCTGTGATAT
CAATGGCGAACCAAGAAAATCTTATGTCCTTTATGTCTGCCACTTGTCTG
CCAACAATGAGGTGATCAGTGTGAAAGAAATGACN

Run BLAST on NCBI

transcript from alignment at sc0000174:531168..535986+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00013855 ID=TCONS_00013855|Name=TCONS_00013855|organism=Clytia hemisphaerica|type=transcript|length=4819bp|location=Sequence derived from alignment at sc0000174:531168..535986+ (Clytia hemisphaerica)
AGAAGTattaataaaacaaatgatgattaattttggaaaatggtGTTTTG
GAGTTGTATGTTTTATCTGTCTATTGGTGGTGATTAGGTGTTCTTCACAA
CGATTTGATGATAATCTTCGATATGATATTTCCTGGAATGGTCCGCTCAC
AGAACAGGTAATCTTTGTCACTACGGTATACAATAATATGCATTAAATGC
TTTCTTTTGGCTTTGAAATTTTATGGTATACCAGAACAGGGACAATGCAT
AATAATGCACAAGAGATATTTGACCCTTTTGCTCTGATAagagtgaaaaa
taaaatcgaCCAACATTCATTTATTTGCAGACTGAACCAGGAAGCCACCA
TGAGAGAGTAATGATTACTACCAAGGACAATGAAAAATACCAGTGTCTTA
TCCCACAACTCAAGACAGAAGCTGAGGTTGATTTCTCCTTGTATATATCA
GTTTTGAATTGTGTTTTATAAGTTGTATACTTCGCTACTAAAAAAAAGCC
TAGAATATgttagttttaataaaaaatgatatatGAATAACTCTTCATTG
TATAGCTTTTTTCacaaattgtatatttttatagGATTTTGATATTGATT
TTGGGCCAGCACCTGAGGTTTTGTTGTCAGACGTCTTAGAAGCCACTCCA
AAGAAATGTTCTTATAGAGTATGTAAATTCTATTTCAAAGTAATCTGCTC
CGGTAAGGCTACTACACAATATGTAGGTGAACCAAATTTCAATATATTGA
GAGTAATTCACAATATATTTGGCATCTGTATTCTGTCTTGGGAAATACAT
TTTTTGTCGTATCAAATTCTGGCAACTTTACAATACTTTCCTCGAACACA
ATATTGAAATCCCTGGCTTTGAGTGATTGTCTTATTGGATATCTTTGAGG
GGAATCGTTCATGTACCACTACTCTGATTGAAGAGTATGGGGGGTAATAT
ACCAGACACCGTATCCTGGATGGTGACAATGCTCAAATGAATAAGTACTC
ACTTGTTCGAATAAGTTCGCCGATACGCCATGACTCGTTTTATTTGCAAG
CACTGGGTCAATGGTGTCTGGTAAGCGTGATGACTTACCCATTCAGAATA
ATTCCGAGAGAGGGTTCGTTTGTCTGCATCTACGCGATCATCATTAATCT
GTCAAATAGTATAGAGGCTACAACTAATTTAACATTGTCGTAACAGACTG
TCAATGAGCGTTCTCATTAATGAAGTTTTTTCTTTNGGTATACCAGAACA
GGGACAATGCATAATAATGCACAAGAGATATTTGACCCTTTTGCTCTGAT
AagagtgaaaaataaaatcgaCCAACATTCATTTATTTGCAGACTGAACC
AGGAAGCCACCATGAGAGAGTAATGATTACTACCAAGGACAATGAAAAAT
ACCAGTGTCTTATCCCACAACTCAAGACAGAAGCTGAGGTTGATTTCTCC
TTGTATATATCAGTTTTGAATTGTGTTTTATAAGTTGTATACTTCGCTAC
TAAAAAAAAGCCTAGAATATgttagttttaataaaaaatgatatatGAAT
AACTCTTCATTGTATAGCTTTTTTCacaaattgtatatttttatagGATT
TTGATATTGATTTTGGGCCAGCACCTGAGGTTTTGTTGTCAGACGTCTTA
GAAGCCACTCCAAAGAAATGTTCTTATAGAGTATGTAAATTCTATTTCAA
AGTAATCTGCTCCGGTAAGGCTACTACACAATATGTAGGTGAACCAAATT
TCAATATATTGAGAGTAATTCACAATATATTTGGCATCTGTATTCTGTCT
TGGGAAATACATTTTTTGTCGTATCAAATTCTGGCAACTTTACAATACTT
TCCTCGAACACAATATTGAAATCCCTGGCTTTGAGTGATTGTCTTATTGG
ATATCTTTGAGGGGAATCGTTCATGTACCACTACTCTGATTGAAGAGTAT
GGGGGGTAATATACCAGACACCGTATCCTGGATGGTGACAATGCTCAAAT
GAATAAGTACTCACTTGTTCGAATAAGTTCGCCGATACGCCATGACTCGT
TTTATTTGCAAGCACTGGGTCAATGGTGTCTGGTAAGCGTGATGACTTAC
CCATTCAGAATAATTCCGAGAGAGGGTTCGTTTGTCTGCATCTACGCGAT
CATCATTAATCTGTCAAATAGTATAGAGGCTACAACTAATTTAACATTGT
CGTAACAGACTGTCAATGAGCGTTCTCATTAatgaagttttttctttatt
atattTTCAGTTGGAACCATATTGGACGTATGAGGTATGCCATGGACAAT
CCGTTATTCAATTCCACGAAGAAAAGGATAAGGATGGGGTAAGCTCTATT
CTAGCTCATATTCTTCTTCTTGCCGTTTAACCACTACTTAGATTtcctaa
aaagaaaatttatataCAGTGGAGATTTTGAGTTGGGGAGTAAGGTCTTG
TTAattgaagggaccataaaacttatCCGAATTAAGGATACATTCTAATT
ATAGAGGCTCCAGTTAAAGAGACTTCACTGTGTATTTGACCAGACTTGCG
AGGTTAAGATCAGGTTTGTGAAAACAGTGCCCGAACGGGACATACAGTAT
CAGTCAAAAAACTCATACTCCCCTTTCAATGGTATCTTCAATTTTAAGCT
TACAAAACCACTCTGTTTCGAAGATATGTCCTAGTATACACATACTCCTG
GGTACCTAATAACcacccccccccgctaattaatttttcgaacattttcc
acccaggacattcttattccaaccccaccccgcttattaatttttgggaa
aatgtttttgaaagttcccttttttgtcttaattctgctgtattagcctc
cttttcaaacatttccacccaggacatttttattccaaNAGAGTATACGA
AAGTTTTCGAAAGCCTTTCTTACAAATTCTCAAGTATGACTCTTGGTATC
CCTTAACCATCAGATAACAGGTGTCAGAAAATGTGTAAAAAGGCTCAAGA
AATTCCTAAAATTTAAAGCATATTTGAAGGTGGTCTAAggcattttcatt
gaaaatgaacaaaatctttaattttcacccatagaaataatttcttttgt
ttaagggTATCAAACGTGACGAATATATTCTGGGTAAAATGAGCAATGAA
CTGTTGCAAGGTATAGCATTATTTGTAGCTTTCTTTTGTCCGGTTTTCCG
TTTATGAACAAAGAGTTCTGCAAAAGGTCTTATCCGCCACTATATCGTTA
CCGATAAGTATAGTTCATGTGAAGTTCTGAAGTTCATAGGGCTATATTTG
CAACAGAATAAAATACAACTCTATGACATAATCTCTTATTAAAGTCAATA
GAAAGACAACTAGAGGTTGTTTTAGAATGAGTCGCAGAACTCTAAGAAAC
TGCAGCTATTATAAGGTGCAAGAATCGATTTGTGGATGCATTGGTCTTGT
GGCATTGCCTAATTAACTCTTTCTCATTCGAACTTTGATTCGAACTTTTT
TTCCCATAGTTTTAACTTACGTACGCTCCCTACAGCATAGGATCAAAAAG
TATATTATAACATAATATTAGCGCTTGAATAAATTTATTCACTCATTTCT
TAGAACTTTTAAAACGAGCCTCGTCGGACTCAAGCTCAAACGAAAACAAG
AAAAAGGtatcaaaaataataaattttacgCGGAAAAATGTTTGTCACTT
CTCAAGTTGGTGGTTGGTGTGTCGATTACCAATAAGTACAACCAATAAAG
TTTGATTCTGTAACCTTTTTTCACGAGGCACATCATTAACATCCTTTATG
AGATCATTATGAGTACTGTAGAAGGCCGCCGGTGTTCACGTAATCGTGTT
CAAGTTCACGCAGATAGTGCATTTTGCCGTTcacacaaaaattttaaatc
catGCGAATATTTTTCACGCATAAATTATtatgaggattttattttatgt
aaaaaaatttcagcttatTTTGGACACACTATTCATCTTTATTCTCTTAG
ATACCAACGAAGAAGATCGAAGGGCAAGAAACGCCCTACTACAGTATGGA
AATGACAGATGGTACACCCTGTGATATCAATGGCGAACCAAGAAAATCTT
ATGTCCTTTATGTCTGCCACTTGTCTGCCAACAATGAGGTAGTTTAACGA
AGAAGCACTCAAATTGATATTTAACTCCCTGCAAATATTGAAATCCTAAG
ATAAAGATGAACTAGTAAAATAATAATGACTCGCCAGGACTCACTGTAAA
AGAGCTCAGAGAGTCGAAATGAACTACATTATGATGACCCTCCATCCCCT
AGTAGACAAGAACAATGCTATTCGAATGTGTTACTGCCGATTTGAATAGC
TAGagagaaagatgaaaaaaattttaaacaaccaactcgtgaaaatattt
gaaagtagAAACCTTGACTTTGACATTTTTGCAgaaagttggctgtctaa
agtcaatccATTGCCCATTTTTGACGTACATGTAAATGATTTTTCTCtat
ctttttttcaaagaagatttaATTGCCAACTTTCAACTTACCTTTTCCCT
ACTCTTACAGTCAGAAAAGGGCTTATAACGGCCCGTCTAACCCAGAGCTT
ATTTTTAAAGACATCATCTAAGGGTGCTCTTTAAAAGCTAAAGATCTATT
CAGCCTACACCAGGGTATTCTGTGCCGTAAATCAGTAACGCAAATAAAGC
ATGGAATACACGGAGATGAGGTTGATCTAGTCACTCTTATTTTAAATGAA
TTCTTCTTCCAAAAATCTACTTTCAATGAAATATTTACCTTTTAGGTGAT
CAGTGTGAAAGAAATGACN

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_007739	XLOC_007739	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000174	supercontig	sc0000174:531168..535986 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
20.3481	17.2009	6.68187	3.2863	3.97181	4.24044	2.36066	8.06847	8.64864	9.13663	7.96606	6.72753	5.67921	7.96098	5.3238	6.46893	10.0813	8.47075	6.62017	8.42052	11.2931	12.1109	9.91576	12.328	7.91584	7.52649	3.89896	4.34738	6.96723	6.99039

Blast

[Close]

BLAST of TCONS_00013855 vs. Swiss-Prot (Human)
Match: ERLEC (Endoplasmic reticulum lectin 1 OS=Homo sapiens GN=ERLEC1 PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 1.301e-37
Identity = 79/202 (39.11%), Postives = 119/202 (58.91%), Query Frame = 2

Query:  101 RFDDNLRYDISWNGPLTEQTEPGS-----HHERVMITTKDNEKYQCLIPQLKTEAEDFDIDF-GPAPEVLLSDVLEATPKKCSYRLEPYWTYEVCHGQSVIQFHEEKDKDGGIKRDEYILGKMSNELLQELLKRAXXXXXXNENKKKIPTKKIEGQETPYYSMEMTDGTPCDI-NGEPRKSYVLYVCHLSANNEVISVKEMT 685
            +  D++ + ++W G  TE + P +         V++TT   EKY+C++P + +  E+ + D+ GP P  LL  + + +   CSYR+E YWTYEVCHG+ + Q+HEEK+    I   EY LG M   L + LL     ++   E   +IPTK IEGQ TPYY + M +GTPC +    PR S V+Y+CH  + +E++SV E+T
Sbjct:   36 QLSDDIPFRVNWPG--TEFSLPTTGVLYKEDNYVIMTTAHKEKYKCILPLVTSGDEEEEKDYKGPNPRELLEPLFKQS--SCSYRIESYWTYEVCHGKHIRQYHEEKETGQKINIHEYYLGNM---LAKNLLFEKEREAEEKEKSNEIPTKNIEGQMTPYYPVGMGNGTPCSLKQNRPRSSTVMYICHPESKHEILSVAEVT 230

The following BLAST results are available for this feature:

BLAST of TCONS_00013855 vs. Swiss-Prot (Human)

BLAST of TCONS_00013855 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ERLEC	1.301e-37	39.11	Endoplasmic reticulum lectin 1 OS=Homo sapiens GN=...	[more]

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TCONS_00013855 (transcript) - C. hemisphaerica