TCONS_00013813 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013813
Unique NameTCONS_00013813
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length440

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013813 ID=TCONS_00013813|Name=TCONS_00013813|organism=Clytia hemisphaerica|type=transcript|length=440bp
AAAAAAATAAGTGCATACGATATTCAAACTGAGAAAAAATTAGCTAagat
aattatgaaaataacCTCCAAAAAGATactataaaaatttctaaaaatga
gagtataaaatatatttatttacatttcaaaatatatgTATTGTATACGT
TGTGCAAAATGCCAGACATTATGAAAATATCTATTTATTGATGATAAaat
gattttagttttttcgaTCTAATCTTATAAGTATTCAAAATGTATGCGTC
TAATTCAAAATAATcataaatttgtcaaaaatttactaaaaacataattt
tccAATAATAACTTAAAGTTTGGTTCATATGCTAACCAAGTTCAAACGCC
CCTGTCTTGCAGCCCTGGTGAGAATTTTTTCCCACAGTgcgaatgaaaat
ttctataagtccaaaatccagtggggatggtttttgagTG
Run BLAST on NCBI

transcript from alignment at sc0000173:313861..314300

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013813 ID=TCONS_00013813|Name=TCONS_00013813|organism=Clytia hemisphaerica|type=transcript|length=440bp|location=Sequence derived from alignment at sc0000173:313861..314300 (Clytia hemisphaerica)
CActcaaaaaccatccccactggattttggacttatagaaattttcattc
gcACTGTGGGAAAAAATTCTCACCAGGGCTGCAAGACAGGGGCGTTTGAA
CTTGGTTAGCATATGAACCAAACTTTAAGTTATTATTggaaaattatgtt
tttagtaaatttttgacaaatttatgATTATTTTGAATTAGACGCATACA
TTTTGAATACTTATAAGATTAGAtcgaaaaaactaaaatcattTTATCAT
CAATAAATAGATATTTTCATAATGTCTGGCATTTTGCACAACGTATACAA
TAcatatattttgaaatgtaaataaatatattttatactctcatttttag
aaatttttatagtATCTTTTTGGAGgttattttcataattatctTAGCTA
ATTTTTTCTCAGTTTGAATATCGTATGCACTTATTTTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007717XLOC_007717Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013813-exon-sc0000173-1491911889:313861..314300TCONS_00013813-exon-sc0000173-1491911889:313861..314300Clytia hemisphaericaexon
TCONS_00013813-exon-sc0000173-1510915933:313861..314300TCONS_00013813-exon-sc0000173-1510915933:313861..314300Clytia hemisphaericaexon
TCONS_00013813-exon-sc0000173-1575043694:313861..314300TCONS_00013813-exon-sc0000173-1575043694:313861..314300Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000173supercontigsc0000173:313861..314300 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.20226	0	0	0.272661	0.411736	0.704577	0.663241	0.453169	1.265	0	1.04883	0.608825	0.488766	1.13147	0.680339	0.152096	0.149906	0.662877	1.27349	0.510853	0.262755	0.487979	0.555081	0.196662	1.01893	0.26055	0.297335	0.819519	0.251795
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00013813 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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