TCONS_00013810 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013810
Unique NameTCONS_00013810
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length432

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013810 ID=TCONS_00013810|Name=TCONS_00013810|organism=Clytia hemisphaerica|type=transcript|length=432bp
CTTGAATCTGAGACCAAATCAATCTCAAAAGTGTTTCTGCAGCAATAACA
TAATGTAAACAGAAGTTTAATGTTCAATACCAACAATATTTACACTATGT
ACATTTGGCGGGTTTTCTTATTGACTTGGAAGGCCAGCTTCACCAGCCAA
AACCTTCATCAATAAGGAAGCAGATGCTGTAGATTTTGTTAAGCAATCTG
CCAGTTGTTTTGAGGCAGGAACCCATTTAATCGTAATGAGTTTGCCTGGA
ATCATTCCTTGTAAACAGCAAAGGTCAATCATAAGACCTTTATCTTCAAC
AACTGTAGATGTGTGAACAGTGTCTCTCAATGATTTACTGTCTGTTATAC
AANAACGTGACAACATAAAACACCTTGAAGCTTTCCTTTGTTTCTCCAAA
AGAATAACGCTTGGTCATATTTGCTTCTTCTG
Run BLAST on NCBI

transcript from alignment at sc0000173:194938..195369

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013810 ID=TCONS_00013810|Name=TCONS_00013810|organism=Clytia hemisphaerica|type=transcript|length=432bp|location=Sequence derived from alignment at sc0000173:194938..195369 (Clytia hemisphaerica)
CAGAAGAAGCAAATATGACCAAGCGTTATTCTTTTGGAGAAACAAAGGAA
AGCTTCAAGGTGTTTTATGTTGTCACGTTNTTGTATAACAGACAGTAAAT
CATTGAGAGACACTGTTCACACATCTACAGTTGTTGAAGATAAAGGTCTT
ATGATTGACCTTTGCTGTTTACAAGGAATGATTCCAGGCAAACTCATTAC
GATTAAATGGGTTCCTGCCTCAAAACAACTGGCAGATTGCTTAACAAAAT
CTACAGCATCTGCTTCCTTATTGATGAAGGTTTTGGCTGGTGAAGCTGGC
CTTCCAAGTCAATAAGAAAACCCGCCAAATGTACATAGTGTAAATATTGT
TGGTATTGAACATTAAACTTCTGTTTACATTATGTTATTGCTGCAGAAAC
ACTTTTGAGATTGATTTGGTCTCAGATTCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007714XLOC_007714Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013810-exon-sc0000173-1491911889:194938..195369TCONS_00013810-exon-sc0000173-1491911889:194938..195369Clytia hemisphaericaexon
TCONS_00013810-exon-sc0000173-1510915933:194938..195369TCONS_00013810-exon-sc0000173-1510915933:194938..195369Clytia hemisphaericaexon
TCONS_00013810-exon-sc0000173-1575043694:194938..195369TCONS_00013810-exon-sc0000173-1575043694:194938..195369Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000173supercontigsc0000173:194938..195369 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.67364	0.71087	2.86075	0.858898	0.858183	1.38598	0.204539	0.800322	1.64011	1.35376	0.836833	1.48895	1.02689	0.361438	0.0990682	0.969468	0.836014	0.539742	1.35296	1.14686	1.47404	0.560344	0.182413	0.663359	0.341622	0.152445	0.282197	0	0.22078	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00013810 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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