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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013803 ID=TCONS_00013803|Name=TCONS_00013803|organism=Clytia hemisphaerica|type=transcript|length=3057bp
ATACGGTATCTAATTGCAAATACATTTTAAATAACGGATTGATAATTCAC
CAGCGTTCAACGAAATTTTACAAGATCAGCTACAAAAATTTGTCATGATT
CGAATTATTTCAGTTTCTTTGGTCTTTCTTATCTCGGTACTAGCGTAGGT
AACGCTAAGTTTTGTAAGCTTAAATCATGAAATTGACTAAACTTTGACTA
TGTGGACGTCATCGCCTAGCGTTTGCGTTACTCTAAATGACGTTTTGTGC
GTAAGTCCCGTCGCTCCGTTACTACGGCGTGTCATAGTAGTTACGGGAGA
TTCTTTCGGTGAATAGGAATTATTTTGACGGCAAGTTCTATATTTCCACG
CTCGTTCATTCATGTAGACATACATCACCCATATAAAGAGACCACGAAAT
CCACGAAGAGTCACGTAAACGAATTGTACTATAATATGTAATACAGCTTT
CCACGTTTCCTCACCTCTAGGCATTTGTATGAAACCTATTAGTTCAACGA
GTCCTAAAAGGAAGACTAACTTCATGGCTGTTTTAAGTACGGTGGTTTCT
TTAGTTTCCGTTGCTTTATTGAGAAGTTGAGACGAACGTCTTTGCTGGAT
ATAGATTTGTGTCAATACGAAAGATATGACTGCGATATCGAATAATGATA
TGACCACGATCGGAATCAAGTACAAAAATACGCGATATGTTTGGTTTCCG
ATCCAGCAAATGTCCCGACCGTAACCGATGCTCAGAACCCCGTAACGATC
TAAGAACGACATTGTAATTACTGGAATTAAAGGTGCTCCGAATCCGATAA
TACAATAGTATAGAAAAGTCATGTTAGAACGTGTTTTACCTCTCTTGAAA
GTTGTCCAAATTTCGAACGCTATAATAGCTGACCACGCATGCGCGCTCAA
CAGTCCATAATGCAATAGTGATGCAATGACACCGCAAAGCATTGTTTTCT
TGTCTGTAATACTGGTGGTCAGAATCAAAACATCGCTTTGTAATAAAGCC
ATACAAATACACACAACGTTCTTGCCAGGTATTGTCCGTAGCTCTTTAGC
TTTGGTGTAGACAATTATCACGTATATATAACTTGGTATACTTATTACAC
AACATACGAGTGTTAGATAGCCTAGTGCCTCTTGCGCTTGATCAAACCAT
GTTGGGTCAGGATCTGCTAAACGACCTGTAATATAATCTTGGATGCACAC
GCTGACGCCTTTTCTGGTAGGAATATATTGTTCAGCAAGGTATACTCCAT
CTCGACCCAGATCAATGGTCCCGTTTCCTAaccatttatattttttgtcc
gATAGGTCAATCACCTTTCTCGGACACGGCGAATTTAGATAAAACTTCTG
GCAAGTGTAGATGCGGTACTTCATTTGTTGTTGGTTGATAGAcgttttta
aagatattttgatTTCCGTTAAGTATGTGCCATAAGGGAGTTTGCGGTTC
CCTTTGTTTAAACTGCAGTTTCCTTTCATATTGTACGATGACGTGTTTTT
GAGCTCGATAGGTTCTTCGCGGCACATTTGCATATCAGGGAATCCACGTT
TCAAGGCGATTCCCTTTAAATGTGTTTTTATATAAGGTGAATATGTTGAA
AGGGTAATCTCCTGGCTTGGTatgtctgttttgtttttaatcaaCCCAGA
CATAAACGCTTGTATATGTTCAGGCTTTTGAACTCGTATACCGTACATTA
TAGTGTTTTTGTCACGCTTGATTTCTTCCGTGTTCTGGTATGTGAGTGTC
TGGTCCACAGATGTGTTAAGGTATACAACGCCACGCTCGTTGCTTGAGAA
AATACACGATAATAAATGGTCTATTTTATTATCTTCCGAGTCCATATCTG
TATTTGTTGAATTGTCCTTGCGCTCTTTGCGACAAGAGGCTCCTATTCTT
TCGTAACCATGCCCAcataaaaatggtagacattGTTTATGTGTGACGTC
ATATACCTCTTCATTTGAGCACTGGTAATCTATGTTAAGCTTTTGTCCTT
TGTTATTGTAATACGCTTGAACACCTGTGGTTCCGTAATCAATAGTCACC
GAATGTGACATTGGTATTTGAGGGGTGATTGCGATATTTTGAAGTGGGAT
GATCAGTTTTTCAGGTTTGATCGATGAACATTTTGAACAATGAATGTTAC
GGAACGTCTCCGATCTTGTCGCTGATTCTTGGATCTTGATTTCCCCGTTG
TAAGATTGGCACAGATCGTTATTGGTTTTATGTATAGAGTTGCCTTTGTT
TTGAGATTTGGCACCGTCGCATGGGTTTTTGGCACCACAATAAGGTAAAT
GAGGGTTATTCAAGACTTTGTACGAGCATTCGTTGTGGCCTTCTGGTGAC
GAGTTTGGTCCTACTGCGTTCATAGTTGAATTACATCCAATCTCTATTGA
AATTGGCTTTAAAGAATCTGCGCCGTGACATTGCGCGATGGATGGGTTCT
TGTAGACAACGTTTGATTCGTCTACAACTGGTTGAAAACCAGTCCCGAGA
CGTAGTTTATTCCATTTGGAGCAACCCGTTACGATGTAGACACGATCGAC
CTTTGGACTACTGACGTCAGCAATTTTCATACATTTCACATCCTTTGATT
GTTTGCTCAAATAATAATCAATATACTCTCTCAACACCCAATGGGTTCGA
TCGTTCCAAAAATAATCGATACAACACGATACTCGATTCACGCACGAATG
TTTACACGAACAATGTGTTTTATCTGTTTTTTCACCCGAACATAGATAAT
TGTCGATGAGAGAGAAGTAGAGGAAGGGGTTGCTTCCGATCGCGTGAGTC
GTGTGCTCGCCGTAGAATTGAAGTAATGGAAACAAATGTTTTTCGACACC
ATCTTTACACACCACTATTGAGATTGGTAGTAATAATTGTACCACTATCC
AGAATCTCATCTTGTGATATATTGGTAGCtgtatttttggttgttttcag
aAGGTTTTTTTATTACAGATCTGAAAAGAGTTAGAAATAACATAtaattg
acgctctctaatttgacgttctactatccaatacgctctattattcgata
atattgg Run BLAST on NCBI protein sequence of TCONS_00013803-protein >TCONS_00013803-protein ID=TCONS_00013803-protein|Name=TCONS_00013803-protein|organism=Clytia hemisphaerica|type=polypeptide|length=907bp
MRFWIVVQLLLPISIVVCKDGVEKHLFPLLQFYGEHTTHAIGSNPFLYFS
LIDNYLCSGEKTDKTHCSCKHSCVNRVSCCIDYFWNDRTHWVLREYIDYY
LSKQSKDVKCMKIADVSSPKVDRVYIVTGCSKWNKLRLGTGFQPVVDESN
VVYKNPSIAQCHGADSLKPISIEIGCNSTMNAVGPNSSPEGHNECSYKVL
NNPHLPYCGAKNPCDGAKSQNKGNSIHKTNNDLCQSYNGEIKIQESATRS
ETFRNIHCSKCSSIKPEKLIIPLQNIAITPQIPMSHSVTIDYGTTGVQAY
YNNKGQKLNIDYQCSNEEVYDVTHKQCLPFLCGHGYERIGASCRKERKDN
STNTDMDSEDNKIDHLLSCIFSSNERGVVYLNTSVDQTLTYQNTEEIKRD
KNTIMYGIRVQKPEHIQAFMSGLIKNKTDIPSQEITLSTYSPYIKTHLKG
IALKRGFPDMQMCREEPIELKNTSSYNMKGNCSLNKGNRKLPYGTYLTEI
KISLKTSINQQQMKYRIYTCQKFYLNSPCPRKVIDLSDKKYKWLGNGTID
LGRDGVYLAEQYIPTRKGVSVCIQDYITGRLADPDPTWFDQAQEALGYLT
LVCCVISIPSYIYVIIVYTKAKELRTIPGKNVVCICMALLQSDVLILTTS
ITDKKTMLCGVIASLLHYGLLSAHAWSAIIAFEIWTTFKRGKTRSNMTFL
YYCIIGFGAPLIPVITMSFLDRYGVLSIGYGRDICWIGNQTYRVFLYLIP
IVVISLFDIAVISFVLTQIYIQQRRSSQLLNKATETKETTVLKTAMKLVF
LLGLVELIGFIQMPRGEETWKAVLHIIVQFVYVTLRGFRGLFIWVMYVYM
NERAWKYRTCRQNNSYSPKESPVTTMTRRSNGATGLTHKTSFRVTQTLGD
DVHIVKV Run BLAST on NCBI transcript from alignment at sc0000173:111449..114505 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00013803 ID=TCONS_00013803|Name=TCONS_00013803|organism=Clytia hemisphaerica|type=transcript|length=3057bp|location=Sequence derived from alignment at sc0000173:111449..114505 (Clytia hemisphaerica)
ccaatattatcgaataatagagcgtattggatagtagaacgtcaaattag
agagcgtcaattaTATGTTATTTCTAACTCTTTTCAGATCTGTAATAAAA
AAACCTtctgaaaacaaccaaaaatacaGCTACCAATATATCACAAGATG
AGATTCTGGATAGTGGTACAATTATTACTACCAATCTCAATAGTGGTGTG
TAAAGATGGTGTCGAAAAACATTTGTTTCCATTACTTCAATTCTACGGCG
AGCACACGACTCACGCGATCGGAAGCAACCCCTTCCTCTACTTCTCTCTC
ATCGACAATTATCTATGTTCGGGTGAAAAAACAGATAAAACACATTGTTC
GTGTAAACATTCGTGCGTGAATCGAGTATCGTGTTGTATCGATTATTTTT
GGAACGATCGAACCCATTGGGTGTTGAGAGAGTATATTGATTATTATTTG
AGCAAACAATCAAAGGATGTGAAATGTATGAAAATTGCTGACGTCAGTAG
TCCAAAGGTCGATCGTGTCTACATCGTAACGGGTTGCTCCAAATGGAATA
AACTACGTCTCGGGACTGGTTTTCAACCAGTTGTAGACGAATCAAACGTT
GTCTACAAGAACCCATCCATCGCGCAATGTCACGGCGCAGATTCTTTAAA
GCCAATTTCAATAGAGATTGGATGTAATTCAACTATGAACGCAGTAGGAC
CAAACTCGTCACCAGAAGGCCACAACGAATGCTCGTACAAAGTCTTGAAT
AACCCTCATTTACCTTATTGTGGTGCCAAAAACCCATGCGACGGTGCCAA
ATCTCAAAACAAAGGCAACTCTATACATAAAACCAATAACGATCTGTGCC
AATCTTACAACGGGGAAATCAAGATCCAAGAATCAGCGACAAGATCGGAG
ACGTTCCGTAACATTCATTGTTCAAAATGTTCATCGATCAAACCTGAAAA
ACTGATCATCCCACTTCAAAATATCGCAATCACCCCTCAAATACCAATGT
CACATTCGGTGACTATTGATTACGGAACCACAGGTGTTCAAGCGTATTAC
AATAACAAAGGACAAAAGCTTAACATAGATTACCAGTGCTCAAATGAAGA
GGTATATGACGTCACACATAAACaatgtctaccatttttatgTGGGCATG
GTTACGAAAGAATAGGAGCCTCTTGTCGCAAAGAGCGCAAGGACAATTCA
ACAAATACAGATATGGACTCGGAAGATAATAAAATAGACCATTTATTATC
GTGTATTTTCTCAAGCAACGAGCGTGGCGTTGTATACCTTAACACATCTG
TGGACCAGACACTCACATACCAGAACACGGAAGAAATCAAGCGTGACAAA
AACACTATAATGTACGGTATACGAGTTCAAAAGCCTGAACATATACAAGC
GTTTATGTCTGGGttgattaaaaacaaaacagacatACCAAGCCAGGAGA
TTACCCTTTCAACATATTCACCTTATATAAAAACACATTTAAAGGGAATC
GCCTTGAAACGTGGATTCCCTGATATGCAAATGTGCCGCGAAGAACCTAT
CGAGCTCAAAAACACGTCATCGTACAATATGAAAGGAAACTGCAGTTTAA
ACAAAGGGAACCGCAAACTCCCTTATGGCACATACTTAACGGAAatcaaa
atatctttaaaaacgTCTATCAACCAACAACAAATGAAGTACCGCATCTA
CACTTGCCAGAAGTTTTATCTAAATTCGCCGTGTCCGAGAAAGGTGATTG
ACCTATcggacaaaaaatataaatggtTAGGAAACGGGACCATTGATCTG
GGTCGAGATGGAGTATACCTTGCTGAACAATATATTCCTACCAGAAAAGG
CGTCAGCGTGTGCATCCAAGATTATATTACAGGTCGTTTAGCAGATCCTG
ACCCAACATGGTTTGATCAAGCGCAAGAGGCACTAGGCTATCTAACACTC
GTATGTTGTGTAATAAGTATACCAAGTTATATATACGTGATAATTGTCTA
CACCAAAGCTAAAGAGCTACGGACAATACCTGGCAAGAACGTTGTGTGTA
TTTGTATGGCTTTATTACAAAGCGATGTTTTGATTCTGACCACCAGTATT
ACAGACAAGAAAACAATGCTTTGCGGTGTCATTGCATCACTATTGCATTA
TGGACTGTTGAGCGCGCATGCGTGGTCAGCTATTATAGCGTTCGAAATTT
GGACAACTTTCAAGAGAGGTAAAACACGTTCTAACATGACTTTTCTATAC
TATTGTATTATCGGATTCGGAGCACCTTTAATTCCAGTAATTACAATGTC
GTTCTTAGATCGTTACGGGGTTCTGAGCATCGGTTACGGTCGGGACATTT
GCTGGATCGGAAACCAAACATATCGCGTATTTTTGTACTTGATTCCGATC
GTGGTCATATCATTATTCGATATCGCAGTCATATCTTTCGTATTGACACA
AATCTATATCCAGCAAAGACGTTCGTCTCAACTTCTCAATAAAGCAACGG
AAACTAAAGAAACCACCGTACTTAAAACAGCCATGAAGTTAGTCTTCCTT
TTAGGACTCGTTGAACTAATAGGTTTCATACAAATGCCTAGAGGTGAGGA
AACGTGGAAAGCTGTATTACATATTATAGTACAATTCGTTTACGTGACTC
TTCGTGGATTTCGTGGTCTCTTTATATGGGTGATGTATGTCTACATGAAT
GAACGAGCGTGGAAATATAGAACTTGCCGTCAAAATAATTCCTATTCACC
GAAAGAATCTCCCGTAACTACTATGACACGCCGTAGTAACGGAGCGACGG
GACTTACGCACAAAACGTCATTTAGAGTAACGCAAACGCTAGGCGATGAC
GTCCACATAGTCAAAGTTTAGTCAATTTCATGATTTAAGCTTACAAAACT
TAGCGTTACCTACGCTAGTACCGAGATAAGAAAGACCAAAGAAACTGAAA
TAATTCGAATCATGACAAATTTTTGTAGCTGATCTTGTAAAATTTCGTTG
AACGCTGGTGAATTATCAATCCGTTATTTAAAATGTATTTGCAATTAGAT
ACCGTAT Coding sequence (CDS) from alignment at sc0000173:111449..114505 >TCONS_00013803 ID=TCONS_00013803|Name=TCONS_00013803|organism=Clytia hemisphaerica|type=CDS|length=2724bp|location=Sequence derived from alignment at sc0000173:111449..114505 (Clytia hemisphaerica)
ATGAGATTCTGGATAGTGGTACAATTATTACTACCAATCTCAATAGTGGT
GTGTAAAGATGGTGTCGAAAAACATTTGTTTCCATTACTTCAATTCTACG
GCGAGCACACGACTCACGCGATCGGAAGCAACCCCTTCCTCTACTTCTCT
CTCATCGACAATTATCTATGTTCGGGTGAAAAAACAGATAAAACACATTG
TTCGTGTAAACATTCGTGCGTGAATCGAGTATCGTGTTGTATCGATTATT
TTTGGAACGATCGAACCCATTGGGTGTTGAGAGAGTATATTGATTATTAT
TTGAGCAAACAATCAAAGGATGTGAAATGTATGAAAATTGCTGACGTCAG
TAGTCCAAAGGTCGATCGTGTCTACATCGTAACGGGTTGCTCCAAATGGA
ATAAACTACGTCTCGGGACTGGTTTTCAACCAGTTGTAGACGAATCAAAC
GTTGTCTACAAGAACCCATCCATCGCGCAATGTCACGGCGCAGATTCTTT
AAAGCCAATTTCAATAGAGATTGGATGTAATTCAACTATGAACGCAGTAG
GACCAAACTCGTCACCAGAAGGCCACAACGAATGCTCGTACAAAGTCTTG
AATAACCCTCATTTACCTTATTGTGGTGCCAAAAACCCATGCGACGGTGC
CAAATCTCAAAACAAAGGCAACTCTATACATAAAACCAATAACGATCTGT
GCCAATCTTACAACGGGGAAATCAAGATCCAAGAATCAGCGACAAGATCG
GAGACGTTCCGTAACATTCATTGTTCAAAATGTTCATCGATCAAACCTGA
AAAACTGATCATCCCACTTCAAAATATCGCAATCACCCCTCAAATACCAA
TGTCACATTCGGTGACTATTGATTACGGAACCACAGGTGTTCAAGCGTAT
TACAATAACAAAGGACAAAAGCTTAACATAGATTACCAGTGCTCAAATGA
AGAGGTATATGACGTCACACATAAACaatgtctaccatttttatgTGGGC
ATGGTTACGAAAGAATAGGAGCCTCTTGTCGCAAAGAGCGCAAGGACAAT
TCAACAAATACAGATATGGACTCGGAAGATAATAAAATAGACCATTTATT
ATCGTGTATTTTCTCAAGCAACGAGCGTGGCGTTGTATACCTTAACACAT
CTGTGGACCAGACACTCACATACCAGAACACGGAAGAAATCAAGCGTGAC
AAAAACACTATAATGTACGGTATACGAGTTCAAAAGCCTGAACATATACA
AGCGTTTATGTCTGGGttgattaaaaacaaaacagacatACCAAGCCAGG
AGATTACCCTTTCAACATATTCACCTTATATAAAAACACATTTAAAGGGA
ATCGCCTTGAAACGTGGATTCCCTGATATGCAAATGTGCCGCGAAGAACC
TATCGAGCTCAAAAACACGTCATCGTACAATATGAAAGGAAACTGCAGTT
TAAACAAAGGGAACCGCAAACTCCCTTATGGCACATACTTAACGGAAatc
aaaatatctttaaaaacgTCTATCAACCAACAACAAATGAAGTACCGCAT
CTACACTTGCCAGAAGTTTTATCTAAATTCGCCGTGTCCGAGAAAGGTGA
TTGACCTATcggacaaaaaatataaatggtTAGGAAACGGGACCATTGAT
CTGGGTCGAGATGGAGTATACCTTGCTGAACAATATATTCCTACCAGAAA
AGGCGTCAGCGTGTGCATCCAAGATTATATTACAGGTCGTTTAGCAGATC
CTGACCCAACATGGTTTGATCAAGCGCAAGAGGCACTAGGCTATCTAACA
CTCGTATGTTGTGTAATAAGTATACCAAGTTATATATACGTGATAATTGT
CTACACCAAAGCTAAAGAGCTACGGACAATACCTGGCAAGAACGTTGTGT
GTATTTGTATGGCTTTATTACAAAGCGATGTTTTGATTCTGACCACCAGT
ATTACAGACAAGAAAACAATGCTTTGCGGTGTCATTGCATCACTATTGCA
TTATGGACTGTTGAGCGCGCATGCGTGGTCAGCTATTATAGCGTTCGAAA
TTTGGACAACTTTCAAGAGAGGTAAAACACGTTCTAACATGACTTTTCTA
TACTATTGTATTATCGGATTCGGAGCACCTTTAATTCCAGTAATTACAAT
GTCGTTCTTAGATCGTTACGGGGTTCTGAGCATCGGTTACGGTCGGGACA
TTTGCTGGATCGGAAACCAAACATATCGCGTATTTTTGTACTTGATTCCG
ATCGTGGTCATATCATTATTCGATATCGCAGTCATATCTTTCGTATTGAC
ACAAATCTATATCCAGCAAAGACGTTCGTCTCAACTTCTCAATAAAGCAA
CGGAAACTAAAGAAACCACCGTACTTAAAACAGCCATGAAGTTAGTCTTC
CTTTTAGGACTCGTTGAACTAATAGGTTTCATACAAATGCCTAGAGGTGA
GGAAACGTGGAAAGCTGTATTACATATTATAGTACAATTCGTTTACGTGA
CTCTTCGTGGATTTCGTGGTCTCTTTATATGGGTGATGTATGTCTACATG
AATGAACGAGCGTGGAAATATAGAACTTGCCGTCAAAATAATTCCTATTC
ACCGAAAGAATCTCCCGTAACTACTATGACACGCCGTAGTAACGGAGCGA
CGGGACTTACGCACAAAACGTCATTTAGAGTAACGCAAACGCTAGGCGAT
GACGTCCACATAGTCAAAGTTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00013803-exon-sc0000173-1491911889:111449..114505 | TCONS_00013803-exon-sc0000173-1491911889:111449..114505 | Clytia hemisphaerica | exon |
| TCONS_00013803-exon-sc0000173-1510915933:111449..114505 | TCONS_00013803-exon-sc0000173-1510915933:111449..114505 | Clytia hemisphaerica | exon |
| TCONS_00013803-exon-sc0000173-1575043694:111449..114505 | TCONS_00013803-exon-sc0000173-1575043694:111449..114505 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000173 | supercontig | sc0000173:111449..114505 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
| GO:0004888 | transmembrane signaling receptor activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
| GO:0007166 | cell surface receptor signaling pathway |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007166 |
cell surface receptor signaling pathway |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
| molecular_function |
GO:0004888 |
transmembrane signaling receptor activity |
Blast
The following BLAST results are available for this feature:
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