TCONS_00013796 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013796
Unique NameTCONS_00013796
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length727

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013796 ID=TCONS_00013796|Name=TCONS_00013796|organism=Clytia hemisphaerica|type=transcript|length=727bp
ATTTTTGAATAGGATGAGTGTATCGTCAGAGTTTTGGTAACAAGTACAGA
TTCTCTAATTAAATAGAACGATACAATGCTGAAAATAAGTTGTCATAAAA
AATACTGAAAGATGGCGCTATATCTTATTATGATATCGTGCTTACAAATC
TACTTTGCTTTTTCTAAAACCGATCAATTCACCATAACAAGGCGTAATAA
ACAATTACGTGGATATAATTTAGTTTCGAAGTACAATGTAAACAAACCTA
TCGAATGTGTTTTCGAATGTCAAAATTACCGAAAatgtcaatcaatcaat
tatcaTTCTGGTCAGCAAATTtgtcaattgaataaaattgTCAGTCAGAC
ATTAAGAGATGTCAGTTTAGCACATGCTATTGGATGGCAATATTTTGAGA
AGAAAGAGGATGTTGAAGTTTCAAATGAACGTTATTTCTACATTACCGAA
GAAACCAAACCAGAACGGAATAAATTGCTCAACATCATCCCAttagcttt
ttcacattggacaTTATCAATGGACATTACACCACGTGCTTTCCCTCAAG
ATGGCCCTCGAAATATTCTTCATATGATCTCCAGAAATGAATCTTCGGAT
GACGTCACTACAATAATATCCATCCTCCAAGATGGAGGTACGAGTTGTAC
AGGGgggtctccataactcgacaCTCACGGAGAACACCAAGTTGTTTgat
ttaaggaaatttcgagttatggagtaa
Run BLAST on NCBI

protein sequence of TCONS_00013796-protein

>TCONS_00013796-protein ID=TCONS_00013796-protein|Name=TCONS_00013796-protein|organism=Clytia hemisphaerica|type=polypeptide|length=184bp
MALYLIMISCLQIYFAFSKTDQFTITRRNKQLRGYNLVSKYNVNKPIECV
FECQNYRKCQSINYHSGQQICQLNKIVSQTLRDVSLAHAIGWQYFEKKED
VEVSNERYFYITEETKPERNKLLNIIPLAFSHWTLSMDITPRAFPQDGPR
NILHMISRNESSDDVTTIISILQDGGTSCTGGSP
Run BLAST on NCBI

transcript from alignment at sc0000173:286481..289013-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013796 ID=TCONS_00013796|Name=TCONS_00013796|organism=Clytia hemisphaerica|type=transcript|length=2533bp|location=Sequence derived from alignment at sc0000173:286481..289013- (Clytia hemisphaerica)
ATTTTTGAATAGGATGAGTGTATCGTCAGAGTTTTGGTAACAAGTACAGA
TTCTCTAATTAAATAGAACGATACAATGCTGAAAATAAGTTGTCATAAAA
AATACTGAAAGATGGCGCTATATCTTATTATGATATCGTGCTTACAAATC
TACTTTGCTTTTTCTAAAACCGATCAATTCACCATAACAAGGCGTAATAA
ACAATTACGTGGATATAATTTAGTTTCGAAGTACAATGTAAACAAACCTA
TCGAATGTGTTTTCGAATGTCAAAATTACCGAAAATGTCAATCAATCAAT
TATCATTCTGGTCAGCAAATTTGTCAATTGAATAAAATTGTCAGTCAGAC
ATTAAGAGATGTCAGTTTAGCACATGCTATTGGATGGCAATATTTTGAGA
AGAAAGAGGTATGATGTTTTAAGTTTGTTGCACGATAAGATTGATCGAGG
AGGGAGTGGCCAGACCTGCTTCAACACAACCGTATTCCCTCAAACTAGTG
CCGCCTCGCTCTTTCAATTTTCAAGATTGTACAATCGTGCTCAAAAATTG
TGTCCGATGACCCTTTTTTCACCTCTCCCCCCAAAATCAATGCTGGAGTG
AAATTTTTGCACGTTCATAAGACTCACCNGACCCTTTTTCACCTCTCCCC
CCGAATCAATGCTGGAGTTAAATTTTTGCACGTTCATAAGACTCGCCATC
AAAATTGATATTGGCAAATTGGGGAAGCGGGTGGACAAACAGTTCTGCCC
AGGATTGTAGATAAGGCGCCCATTGGAGAGCGGTGGTTCATGAGAAGGGC
GTTGCCATATAAAGGAAAAGCATGTTAGGTTCGATATGTGATATACCAGC
AGGTTACCTTATCTACATTCTTAAATCCTGGTTTGGGCCAATAAAAAAAG
TAAGAACACAAAACTGCCAATTTAATTCATCTTACTGGACCCTCAACTTT
TATTGAACAGTTCGAAAATTTCGACGCCCTAGCGATCAAGAAAAACGTCA
GAAAATTGACCGAAAGGTTCGCTGATTTTCACATAATGCAAATTTTATGT
TTTAGGATGTTGAAGTTTCAAATGAACGTTATTTCTACATTACCGAAGGT
ACTTTTACGCGCATAAACTATCTTTAATACTATAAGAAGACAGAATTTTA
GTCAAATTTTTCATGCATTCATGTACTGAAAGGTTTCGATTCTAAAAAAT
CCTCTGAAGATTGAATAATTTGCAAAAAAAATACGAGTAGAAACTTTATC
GTGGAAATGGGCTTTTCCAGAAAATATCCGTACATGGGTGGAGGAAATAG
TGTCCGGGGGGGGGAGTGAAAAATCTACAAAATTTGCCCTTTCCGGGGGG
GGGGGGGAAAACTTGCTCTGTTTGGCTTTTGCGGGGGGGGGGGGGGTAAA
CTTGCTCTGTTTGGCTTTTGCGGGGGGGGGGGGGGTAAACTTGCTCTGTT
TGGCTTTTGCGGGGGGGGGGGGGGTAAACTTGCCCTGTTTGGGGCTAATT
TTGCTATCGGTTTGAGGGTTATTTTGAATCTCCAGGATGGTCAACTGATG
CTTGTCCAAGGGGTCAGACCTGCTGTCCGGGGCTGTCCGGGGGTCAAAAT
TCACAATGTCCGGGGGTAAATATCTAAAAAATGCTATCCTCCATTCCTCC
CCCATATTCAAATTTTTTTCTGAAAAAGCCCAATGCCAGAAAAAGTCTGA
ACAAGCCATAAACTTTACAGTTCCTTTATATCGGCCATTCTTGTTTAAAA
GCTTGATTTTCGAATACTACCATTTGAAAGATTTCTTTGAAATTAACACG
AACCTAACAATACAATTTTCAACTGCAGAAACCAAACCAGGATGGAATAA
ATTGCTCAACATCATCCCATTTGCTTTTTCCGGGGGGGGGGGTAAACTTG
CCCTGTTTGGGGCTAATTTTGCTATCGGTTTGAGGGTTATTTTGAATGTC
CAGGATGGTCAACTGATGCTTGTCCAAGGGGTCAGACCTGCTGTCCGGGG
CTGTCCGGGGGTCAAAATTCACAATGTCCGAGGGGTAAATATCTAAAAAA
TGCTATCCTCCATTCCTCCCCCATATTCAAATTTTTTCTGAAAAAGCTCA
ATGCCAGAAAAGGTCTGAACAAGCCATAAACTTTACAGTTCCTTTATATC
GGCCATTCTTGTTTAAAAGCTTGATTTTCGAATACTAGTACTTTATTTGA
AAGATTTCTTTGAAATTAACACGAACCTAAACCTAACAATACAATTTTCC
ACTGCAGAAACCAAACCAGAACGGAATAAATTGCTCAACATCATCCCATT
AGCTTTTTCACATTGGACATTATCAATGGACATTACACCACGTGCTTTCC
CTCAAGATGGCCCTCGAAATATTCTTCATATGATCTCCAGAAATGAATCT
TCGGATGACGTCACTACAATAATATCCATCCTCCAAGATGGAGGTACGAG
TTGTACAGGGGGGTCTCCATAACTCGACACTCACGGAGAACACCAAGTTG
TTTGATTTAAGGAAATTTCGAGTTATGGAGTAA

Coding sequence (CDS) from alignment at sc0000173:286481..289013-

>TCONS_00013796 ID=TCONS_00013796|Name=TCONS_00013796|organism=Clytia hemisphaerica|type=CDS|length=1665bp|location=Sequence derived from alignment at sc0000173:286481..289013- (Clytia hemisphaerica)
AAACCAAACCAGAACGGAATAAATTGCTCAACATCATCCCATTAGCTTTT
TCACATTGGACATTATCAATGGACATTACACCACGTGCTTTCCCTCAAGA
TGGCCCTCGAAATATTCTTCATATGATCTCCAGAAATGAATCTTCGGATG
ACGTCACTACAATAATATCCATCCTCCAAGATGGAGGTACGAGTTGTACA
GGGGGGTCTCCATAAGATGTTGAAGTTTCAAATGAACGTTATTTCTACAT
TACCGAAGATGGCGCTATATCTTATTATGATATCGTGCTTACAAATCTAC
TTTGCTTTTTCTAAAACCGATCAATTCACCATAACAAGGCGTAATAAACA
ATTACGTGGATATAATTTAGTTTCGAAGTACAATGTAAACAAACCTATCG
AATGTGTTTTCGAATGTCAAAATTACCGAAAATGTCAATCAATCAATTAT
CATTCTGGTCAGCAAATTTGTCAATTGAATAAAATTGTCAGTCAGACATT
AAGAGATGTCAGTTTAGCACATGCTATTGGATGGCAATATTTTGAGAAGA
AAGAGAAACCAAACCAGAACGGAATAAATTGCTCAACATCATCCCATTAG
CTTTTTCACATTGGACATTATCAATGGACATTACACCACGTGCTTTCCCT
CAAGATGGCCCTCGAAATATTCTTCATATGATCTCCAGAAATGAATCTTC
GGATGACGTCACTACAATAATATCCATCCTCCAAGATGGAGGTACGAGTT
GTACAGGGGGGTCTCCATAAGATGTTGAAGTTTCAAATGAACGTTATTTC
TACATTACCGAAGATGGCGCTATATCTTATTATGATATCGTGCTTACAAA
TCTACTTTGCTTTTTCTAAAACCGATCAATTCACCATAACAAGGCGTAAT
AAACAATTACGTGGATATAATTTAGTTTCGAAGTACAATGTAAACAAACC
TATCGAATGTGTTTTCGAATGTCAAAATTACCGAAAATGTCAATCAATCA
ATTATCATTCTGGTCAGCAAATTTGTCAATTGAATAAAATTGTCAGTCAG
ACATTAAGAGATGTCAGTTTAGCACATGCTATTGGATGGCAATATTTTGA
GAAGAAAGAGAAACCAAACCAGAACGGAATAAATTGCTCAACATCATCCC
ATTAGCTTTTTCACATTGGACATTATCAATGGACATTACACCACGTGCTT
TCCCTCAAGATGGCCCTCGAAATATTCTTCATATGATCTCCAGAAATGAA
TCTTCGGATGACGTCACTACAATAATATCCATCCTCCAAGATGGAGGTAC
GAGTTGTACAGGGGGGTCTCCATAAGATGTTGAAGTTTCAAATGAACGTT
ATTTCTACATTACCGAAGATGGCGCTATATCTTATTATGATATCGTGCTT
ACAAATCTACTTTGCTTTTTCTAAAACCGATCAATTCACCATAACAAGGC
GTAATAAACAATTACGTGGATATAATTTAGTTTCGAAGTACAATGTAAAC
AAACCTATCGAATGTGTTTTCGAATGTCAAAATTACCGAAAATGTCAATC
AATCAATTATCATTCTGGTCAGCAAATTTGTCAATTGAATAAAATTGTCA
GTCAGACATTAAGAGATGTCAGTTTAGCACATGCTATTGGATGGCAATAT
TTTGAGAAGAAAGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007702XLOC_007702Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013796-proteinTCONS_00013796-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013796-exon-sc0000173-1575043694:288606..289013TCONS_00013796-exon-sc0000173-1575043694:288606..289013Clytia hemisphaericaexon
TCONS_00013796-exon-sc0000173-1575043694:287916..287958TCONS_00013796-exon-sc0000173-1575043694:287916..287958Clytia hemisphaericaexon
TCONS_00013796-exon-sc0000173-1575043694:286481..286756TCONS_00013796-exon-sc0000173-1575043694:286481..286756Clytia hemisphaericaexon
TCONS_00013796-exon-sc0000173-1510915933:288606..289013TCONS_00013796-exon-sc0000173-1510915933:288606..289013Clytia hemisphaericaexon
TCONS_00013796-exon-sc0000173-1510915933:287916..287958TCONS_00013796-exon-sc0000173-1510915933:287916..287958Clytia hemisphaericaexon
TCONS_00013796-exon-sc0000173-1510915933:286481..286756TCONS_00013796-exon-sc0000173-1510915933:286481..286756Clytia hemisphaericaexon
TCONS_00013796-exon-sc0000173-1491911889:288606..289013TCONS_00013796-exon-sc0000173-1491911889:288606..289013Clytia hemisphaericaexon
TCONS_00013796-exon-sc0000173-1491911889:287916..287958TCONS_00013796-exon-sc0000173-1491911889:287916..287958Clytia hemisphaericaexon
TCONS_00013796-exon-sc0000173-1491911889:286481..286756TCONS_00013796-exon-sc0000173-1491911889:286481..286756Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000173supercontigsc0000173:286481..289013 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.0775477	0.0758683	0.0923624	0	0	0	0.0577151	0	0	0	0	0	0	0	0.0514151	0.368892	0	0	1.45684	1.84108	0.157058	1.07092	0.735345	0.918789	0.187826	0	0.0760184	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003609Pan_app
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00013796 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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