TCONS_00013791 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013791
Unique NameTCONS_00013791
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1896

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013791 ID=TCONS_00013791|Name=TCONS_00013791|organism=Clytia hemisphaerica|type=transcript|length=1896bp
CGTTAATGGCAAAATACAACATGGCAATGGTACATTTCTGATAAACGGTA
TCTTTCCAATCACAAACGAAAATGAAGAATTAAACCCTCAACTCGGTATA
ATGTATTCAGAGGCGATGAAATGGGCCATACAAGAAGTCAACAAAAATCG
ATCCTATTTACACGGATACCAATTCGATGTCAACAAGATTTATGATTCGA
TTAAAGAAGAGCAGGTCCAGAAAAATGTTTTGGATACTTTCATGGAGAAG
ATACCGTTCCTTGTAGGTCCGTATTCCTCGGATACGTCTTACACGTCAAG
TATCTTGACCAAGACGTTTCAGGATATCAACGGGATCAGCTACAGTGCAA
CGTTCTCGGATTTCGACATGATGAATTCGGACGAAGAACGTATGTTGAGA
ACCGTACCGTCGGATCGTTTCCGTGTCGACGCCGTTCTAGCGTTGATTAA
AGATCTACGTTGGAATTTCGTTTCCGTTGTAAGCTCTTACGGATATAATG
GGGAGCGCGAAGCGTTACATCTGACGTCCAAGATTTCGTCTGTGGGTGCT
TGTCTCGCGGCACAAATCGATCTCGCCAAATCACCAACAAACGAAGATTA
CCAAAAAACCATCGATAATTTGCGGTTAGATTCTCGCCTCAAAGTTGTCG
TTTTATTTACATCTGGGAAAGACACGAGAAATTTTATGGCAATGTTAAAG
AAACTGAATTTGGCGAATCGGTTTAATTTGATCTGCGCGTACGGGTGTAC
AAATTATATTAACGTTATTGAAGGAAATGAACTCGTGGCTGAAGGAGCTC
TAAGTCTCGATGTCAAACTACCAGATACTTCTAAATTTACCGAATATTTT
CTCAACAAAAAGCCCACAGCTAATTCGTTAGAACCTTTCAATATATATTG
GGAAAGACTTTTTGATTGCTCTTTAAATCAAACGAACATgcgaaaatact
taaaaatgtGCACCATGAAGGAAAGTCTCAAACTGGGGTCTGGATACTAC
ATCAATACCCCCGTCCACACTGTCATTAATGCTGTTTTTCATTTTGCACG
TGTTGTCCACAGCTTCTCATTAGTTTATTGTCACGTGGATCGGAATTGGG
TGAACAAGACAATGCCATGCCCTCTCGACCCTTCAACTGCCAAATCCTAC
TCCATGTTTTTTCATCGCGTCCTAAAGAAAAGTGCACACAAAGATGGGAC
GCTTTACACTGGCACTATTGAGCCGTTCACTATGGGTGTTGGAAATGAAG
TCGATGATGGTAAGGTCCAGTATGAAGTTCACAAGTATTCGtttaaaaat
cgggaaaacacGAATACAAAAATATGGCAATGGGTTGCAGATCGTCAAAG
TAAAAAACCGGGAGTCGGGAAATTTTTAGAAGCCTGGTACTCGGCTTCGC
CGAATATGACGATCGTGGAACATCGAGGAACGTGCAGTAAAGAATGTCCT
TTAGGATCAATTCGTGATTACGATCGAAActcattaaaatcaaaatgttg
CTGGTCGTGTCAAGCGTGTCCGAAAAATCACCGTGTCATGAATAATACGT
GTCAGCCGTGTAAGCAAGCCGAAGTTGTCGGACCACGGCTATGTTACACT
GTTTGGTTTATTTGGACACAAAATGAAGCTGTTGTTATTCGGACCACTTC
CGCCCGCGCGACAGGGGAGTATTCCTACATGGTATATACCACGGGAACAT
TCGAAAAGTCTTTCAAGTACTTATAGCTGTGAGTGTAAAATGTACAGCCC
TAAAAGTTGCTGTGAAGAACTGAATGGATTCTCTAGTTTATAAACTTTTA
TTTGTTGCCTGTATTTCTTAAGTTTATTAGgggtttttaatttatttttt
gtagtaAAGGATGTTTGTTTTAAAGATTGGAAAGAGCGAAAAGAAA
Run BLAST on NCBI

protein sequence of TCONS_00013791-protein

>TCONS_00013791-protein ID=TCONS_00013791-protein|Name=TCONS_00013791-protein|organism=Clytia hemisphaerica|type=polypeptide|length=574bp
VNGKIQHGNGTFLINGIFPITNENEELNPQLGIMYSEAMKWAIQEVNKNR
SYLHGYQFDVNKIYDSIKEEQVQKNVLDTFMEKIPFLVGPYSSDTSYTSS
ILTKTFQDINGISYSATFSDFDMMNSDEERMLRTVPSDRFRVDAVLALIK
DLRWNFVSVVSSYGYNGEREALHLTSKISSVGACLAAQIDLAKSPTNEDY
QKTIDNLRLDSRLKVVVLFTSGKDTRNFMAMLKKLNLANRFNLICAYGCT
NYINVIEGNELVAEGALSLDVKLPDTSKFTEYFLNKKPTANSLEPFNIYW
ERLFDCSLNQTNMRKYLKMCTMKESLKLGSGYYINTPVHTVINAVFHFAR
VVHSFSLVYCHVDRNWVNKTMPCPLDPSTAKSYSMFFHRVLKKSAHKDGT
LYTGTIEPFTMGVGNEVDDGKVQYEVHKYSFKNRENTNTKIWQWVADRQS
KKPGVGKFLEAWYSASPNMTIVEHRGTCSKECPLGSIRDYDRNSLKSKCC
WSCQACPKNHRVMNNTCQPCKQAEVVGPRLCYTVWFIWTQNEAVVIRTTS
ARATGEYSYMVYTTGTFEKSFKYL
Run BLAST on NCBI

transcript from alignment at sc0000173:219656..222912-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013791 ID=TCONS_00013791|Name=TCONS_00013791|organism=Clytia hemisphaerica|type=transcript|length=3257bp|location=Sequence derived from alignment at sc0000173:219656..222912- (Clytia hemisphaerica)
CGTTAATGGCAAAATACAACATGGTAAATATATCACGTTTTTTATCTGTA
GAGAAACCAGGATTTGAGTACATTTAAGAAAGAAATTTGGAATTAGAAAT
TAAGAATATCGCAAGAACACCTGCATTTTACACCTTTTTTACATGTAGAG
AGCTCATGTTTTGAGCACATTAAAGGTTGAAATTTGGAGCTAGAAAATAA
GAATATCATTTGAATTCTCGTTCTGTTCCGAAACTATTCAAGGCTTTTTT
TGGCTAACCTGTAAAGCTAAATAATTATTCTAACCGATAGTACAGTTAGT
TTTGTATTAATTCAAAGTGGTTAAGTAAGTTTGTGACCCTTTTCACTAGC
TATCTACCCGAACATATGGGATGTCTCCACTTACCCTTGATTCTTACCTT
AATTGTTGAGCATCAAGCGGGCATCTTACGGGTCGTAGCTGGATGCTCTA
CCTCCATGCTACGGCCGCTTTTCGTATAAATCTTAAAATTGTGTACATTC
TTTTTCATTCAGGTAATGGTACATTTCTGATTAACGGTATCTTTCCAATT
ACAAACGAAANCCTCCATGCTACGGCTGCTTTTCGTATAAATCTTAAAAT
TGTGTACATTCTTTTTCATTCAGGCAATGGTACATTTCTGATAAACGGTA
TCTTTCCAATCACAAACGAAAATGAAGAATTAAACCCTCAACTCGGTATA
ATGTATTCAGAGGCGATGAAATGGGCCATACAAGAAGTCAACAAAAATCG
ATCCTATTTACACGGATACCAATTCGATGTCAACAAGATTTATGATTCGA
TTAAAGAAGAGCAGGTCCAGAAAAATGTTTTGGATACTTTCATGGAGAAG
ATACCGTTCCTTGTAGGTCCGTATTCCTCGGATACGTCTTACACGTCAAG
TATCTTGACCAAGACGTTTCAGGATATCAACGGGATCAGCTACAGTGCAA
CGTTCTCGGATTTCGACATGATGAATTCGGACGAAGAACGTATGTTGAGA
ACCGTACCGTCGGATCGTTTCCGTGTCGACGCCGTTCTAGCGTTGATTAA
AGATCTACGTTGGAATTTCGTTTCCGTTGTAAGCTCTTACGGATATAATG
GGGAGCGCGAAGCGTTACATCTGACGTCCAAGATTTCGTCTGTGGGTGCT
TGTCTCGCGGCACAAATCGATCTCGCCAAATCACCAACAAACGAAGATTA
CCAAAAAACCATCGATAATTTGCGGTTAGATTCTCGCCTCAAAGTTGTCG
TTTTATTTACATCTGGGAAAGACACGAGAAATTTTATGGCAATGTTAAAG
AAACTGAATTTGGCGAATCGGTTTAATTTGATCTGCGCGTACGGGTGTAC
AAATTATATTAACGTTATTGAAGGAAATGAACTCGTGGCTGAAGGAGCTC
TAAGTCTCGATGTCAAACTACCAGATACTTCTAAATTTACCGAATATTTT
CTCAACAAAAAGCCCACAGCTAATTCGTTAGAACCTTTCAATATATATTG
GGAAAGACTTTTTGATTGCTCTTTAAATCAAACGAACATGCGAAAATACT
TAAAAATGTGCACCATGAAGGAAAGTCTCAAACTGGGGTCTGGATACTAC
ATCAATACCCCCGTCCACACTGTCATTAATGCTGTTTTTCATTTTGCACG
TGTTGTCCACAGCTTCTCATTAGTTTATTGTCACGTGGATCGGAATTGGG
TGAACAAGACAATGCCATGCCCTCTCGACCCTTCAACTGCCAAATCCTAC
TCCATGTTTTTTCATCGCGTCCTAAAGAAAAGTGCACACAAAGATGGGAC
GCTTTACACTGGCACTATTGAGCCGTTCACTATGGGTGTTGGAAATGAAG
TCGATGATGGTAAGGTCCAGTATGAAGTTCACAAGTATTCGTTTAAAAAT
CGGGAAAACACGAATACAAAAATATGGCAATGGGTTGCAGATCGTCAAAG
TAAAAAACCGGGAGTCGGGAAATTTTTAGAAGCCTGGTACTCGGCTTCGC
CGAATATGACGATCGTGGAACATCGAGGAACGTGCAGTAAAGAATGTCCT
TTAGGATCAATTCGTGATTACGATCGAAACTCATTAAAATCAAAATGTTG
CTGGTCGTGTCAAGCGTGTCCGAAAAATCACCGTGTCATGAATAATACGT
GTCAGCCGTGTAAGCAAGCCGAAGTTGTCGGACCACGGTACGGAACATGC
CTTTTAATGCAGGAAAGAATGATAAGTTGGAGAGAGCCGATTGTTCTATG
TTTTATTGTTTTATCAATCCTCGGGATCTGCTTAACCGTGTTTGTAGCGC
TCGTTTTTTGTCGTTACAACGATAACCGTATCGTGAGAGCAGCCGGCCGT
GACTTGAGTTACATGATTTTACTCGGCATCTGTTTCACATTTTCATGCTG
TTTTGTTTTCATATGGGAGACAACTCAATCGACGTGTATCTTACGAGGCG
GCTTACCTGGATTTTCGTTCCTGACGTGTTACGCTCCTCTCTTCTTAAAA
ACGATTCGTATCTATCGTATATTTGTCGGTGCGCAAGTTTCCGTATCCCG
ACCTGCTTTAGTAAGCACGCAATCACAATTCATAGCTTTGTTTGTGATCC
TATCAACCCAACTATTAATCAGTGTCGTTTGGTTCGTATCGAAGATTCCA
ACACCGGAGATTATAGTTACCGGAGAATACGTAACCAGTCATTGTAGTGG
TGACGCCAGTCCCATTCTGTTATTCTTGAACTTATCTCTAAGCGTCATAT
TCATGGTGTCGTGTACCGTACTAGCCTTCAAGACACGACATTTTCCGAAA
AACTTTAACGAGGCTAAATTTATTGGAATCACGCTTTACATCACTTGTGT
AGGATGGGCCGTATTTCTACCAGTTTATTTTTTAGCACCCCATTTACACC
GTGACTTTATGAAAGAATTATTGATGTGTGCTGTATGTACTTTTATAGGC
TATGTTACACTGTTTGGTTTATTTGGACACAAAATGAAGCTGTTGTTATT
CGGACCACTTCCGCCCGCGCGACAGGGGAGTATTCCTACATGGTATATAC
CACGGGAACATTCGAAAAGTCTTTCAAGTACTTATAGCTGTGAGTGTAAA
ATGTACAGCCCTAAAAGTTGCTGTGAAGAACTGAATGGATTCTCTAGTTT
ATAAACTTTTATTTGTTGCCTGTATTTCTTAAGTTTATTAGGGGTTTTTA
ATTTATTTTTTGTAGTAAAGGATGTTTGTTTTAAAGATTGGAAAGAGCGA
AAAGAAA

Coding sequence (CDS) from alignment at sc0000173:219656..222912-

>TCONS_00013791 ID=TCONS_00013791|Name=TCONS_00013791|organism=Clytia hemisphaerica|type=CDS|length=5175bp|location=Sequence derived from alignment at sc0000173:219656..222912- (Clytia hemisphaerica)
GCTATGTTACACTGTTTGGTTTATTTGGACACAAAATGAAGCTGTTGTTA
TTCGGACCACTTCCGCCCGCGCGACAGGGGAGTATTCCTACATGGTATAT
ACCACGGGAACATTCGAAAAGTCTTTCAAGTACTTATAGGCAATGGTACA
TTTCTGATAAACGGTATCTTTCCAATCACAAACGAAAATGAAGAATTAAA
CCCTCAACTCGGTATAATGTATTCAGAGGCGATGAAATGGGCCATACAAG
AAGTCAACAAAAATCGATCCTATTTACACGGATACCAATTCGATGTCAAC
AAGATTTATGATTCGATTAAAGAAGAGCAGGTCCAGAAAAATGTTTTGGA
TACTTTCATGGAGAAGATACCGTTCCTTGTAGGTCCGTATTCCTCGGATA
CGTCTTACACGTCAAGTATCTTGACCAAGACGTTTCAGGATATCAACGGG
ATCAGCTACAGTGCAACGTTCTCGGATTTCGACATGATGAATTCGGACGA
AGAACGTATGTTGAGAACCGTACCGTCGGATCGTTTCCGTGTCGACGCCG
TTCTAGCGTTGATTAAAGATCTACGTTGGAATTTCGTTTCCGTTGTAAGC
TCTTACGGATATAATGGGGAGCGCGAAGCGTTACATCTGACGTCCAAGAT
TTCGTCTGTGGGTGCTTGTCTCGCGGCACAAATCGATCTCGCCAAATCAC
CAACAAACGAAGATTACCAAAAAACCATCGATAATTTGCGGTTAGATTCT
CGCCTCAAAGTTGTCGTTTTATTTACATCTGGGAAAGACACGAGAAATTT
TATGGCAATGTTAAAGAAACTGAATTTGGCGAATCGGTTTAATTTGATCT
GCGCGTACGGGTGTACAAATTATATTAACGTTATTGAAGGAAATGAACTC
GTGGCTGAAGGAGCTCTAAGTCTCGATGTCAAACTACCAGATACTTCTAA
ATTTACCGAATATTTTCTCAACAAAAAGCCCACAGCTAATTCGTTAGAAC
CTTTCAATATATATTGGGAAAGACTTTTTGATTGCTCTTTAAATCAAACG
AACATGCGAAAATACTTAAAAATGTGCACCATGAAGGAAAGTCTCAAACT
GGGGTCTGGATACTACATCAATACCCCCGTCCACACTGTCATTAATGCTG
TTTTTCATTTTGCACGTGTTGTCCACAGCTTCTCATTAGTTTATTGTCAC
GTGGATCGGAATTGGGTGAACAAGACAATGCCATGCCCTCTCGACCCTTC
AACTGCCAAATCCTACTCCATGTTTTTTCATCGCGTCCTAAAGAAAAGTG
CACACAAAGATGGGACGCTTTACACTGGCACTATTGAGCCGTTCACTATG
GGTGTTGGAAATGAAGTCGATGATGGTAAGGTCCAGTATGAAGTTCACAA
GTATTCGTTTAAAAATCGGGAAAACACGAATACAAAAATATGGCAATGGG
TTGCAGATCGTCAAAGTAAAAAACCGGGAGTCGGGAAATTTTTAGAAGCC
TGGTACTCGGCTTCGCCGAATATGACGATCGTGGAACATCGAGGAACGTG
CAGTAAAGAATGTCCTTTAGGATCAATTCGTGATTACGATCGAAACTCAT
TAAAATCAAAATGTTGCTGGTCGTGTCAAGCGTGTCCGAAAAATCACCGT
GTCATGAATAATACGTGTCAGCCGTGTAAGCAAGCCGAAGTTGTCGGACC
ACGGTTAATGGCAAAATACAACATGGCTATGTTACACTGTTTGGTTTATT
TGGACACAAAATGAAGCTGTTGTTATTCGGACCACTTCCGCCCGCGCGAC
AGGGGAGTATTCCTACATGGTATATACCACGGGAACATTCGAAAAGTCTT
TCAAGTACTTATAGGCAATGGTACATTTCTGATAAACGGTATCTTTCCAA
TCACAAACGAAAATGAAGAATTAAACCCTCAACTCGGTATAATGTATTCA
GAGGCGATGAAATGGGCCATACAAGAAGTCAACAAAAATCGATCCTATTT
ACACGGATACCAATTCGATGTCAACAAGATTTATGATTCGATTAAAGAAG
AGCAGGTCCAGAAAAATGTTTTGGATACTTTCATGGAGAAGATACCGTTC
CTTGTAGGTCCGTATTCCTCGGATACGTCTTACACGTCAAGTATCTTGAC
CAAGACGTTTCAGGATATCAACGGGATCAGCTACAGTGCAACGTTCTCGG
ATTTCGACATGATGAATTCGGACGAAGAACGTATGTTGAGAACCGTACCG
TCGGATCGTTTCCGTGTCGACGCCGTTCTAGCGTTGATTAAAGATCTACG
TTGGAATTTCGTTTCCGTTGTAAGCTCTTACGGATATAATGGGGAGCGCG
AAGCGTTACATCTGACGTCCAAGATTTCGTCTGTGGGTGCTTGTCTCGCG
GCACAAATCGATCTCGCCAAATCACCAACAAACGAAGATTACCAAAAAAC
CATCGATAATTTGCGGTTAGATTCTCGCCTCAAAGTTGTCGTTTTATTTA
CATCTGGGAAAGACACGAGAAATTTTATGGCAATGTTAAAGAAACTGAAT
TTGGCGAATCGGTTTAATTTGATCTGCGCGTACGGGTGTACAAATTATAT
TAACGTTATTGAAGGAAATGAACTCGTGGCTGAAGGAGCTCTAAGTCTCG
ATGTCAAACTACCAGATACTTCTAAATTTACCGAATATTTTCTCAACAAA
AAGCCCACAGCTAATTCGTTAGAACCTTTCAATATATATTGGGAAAGACT
TTTTGATTGCTCTTTAAATCAAACGAACATGCGAAAATACTTAAAAATGT
GCACCATGAAGGAAAGTCTCAAACTGGGGTCTGGATACTACATCAATACC
CCCGTCCACACTGTCATTAATGCTGTTTTTCATTTTGCACGTGTTGTCCA
CAGCTTCTCATTAGTTTATTGTCACGTGGATCGGAATTGGGTGAACAAGA
CAATGCCATGCCCTCTCGACCCTTCAACTGCCAAATCCTACTCCATGTTT
TTTCATCGCGTCCTAAAGAAAAGTGCACACAAAGATGGGACGCTTTACAC
TGGCACTATTGAGCCGTTCACTATGGGTGTTGGAAATGAAGTCGATGATG
GTAAGGTCCAGTATGAAGTTCACAAGTATTCGTTTAAAAATCGGGAAAAC
ACGAATACAAAAATATGGCAATGGGTTGCAGATCGTCAAAGTAAAAAACC
GGGAGTCGGGAAATTTTTAGAAGCCTGGTACTCGGCTTCGCCGAATATGA
CGATCGTGGAACATCGAGGAACGTGCAGTAAAGAATGTCCTTTAGGATCA
ATTCGTGATTACGATCGAAACTCATTAAAATCAAAATGTTGCTGGTCGTG
TCAAGCGTGTCCGAAAAATCACCGTGTCATGAATAATACGTGTCAGCCGT
GTAAGCAAGCCGAAGTTGTCGGACCACGGTTAATGGCAAAATACAACATG
GCTATGTTACACTGTTTGGTTTATTTGGACACAAAATGAAGCTGTTGTTA
TTCGGACCACTTCCGCCCGCGCGACAGGGGAGTATTCCTACATGGTATAT
ACCACGGGAACATTCGAAAAGTCTTTCAAGTACTTATAGGCAATGGTACA
TTTCTGATAAACGGTATCTTTCCAATCACAAACGAAAATGAAGAATTAAA
CCCTCAACTCGGTATAATGTATTCAGAGGCGATGAAATGGGCCATACAAG
AAGTCAACAAAAATCGATCCTATTTACACGGATACCAATTCGATGTCAAC
AAGATTTATGATTCGATTAAAGAAGAGCAGGTCCAGAAAAATGTTTTGGA
TACTTTCATGGAGAAGATACCGTTCCTTGTAGGTCCGTATTCCTCGGATA
CGTCTTACACGTCAAGTATCTTGACCAAGACGTTTCAGGATATCAACGGG
ATCAGCTACAGTGCAACGTTCTCGGATTTCGACATGATGAATTCGGACGA
AGAACGTATGTTGAGAACCGTACCGTCGGATCGTTTCCGTGTCGACGCCG
TTCTAGCGTTGATTAAAGATCTACGTTGGAATTTCGTTTCCGTTGTAAGC
TCTTACGGATATAATGGGGAGCGCGAAGCGTTACATCTGACGTCCAAGAT
TTCGTCTGTGGGTGCTTGTCTCGCGGCACAAATCGATCTCGCCAAATCAC
CAACAAACGAAGATTACCAAAAAACCATCGATAATTTGCGGTTAGATTCT
CGCCTCAAAGTTGTCGTTTTATTTACATCTGGGAAAGACACGAGAAATTT
TATGGCAATGTTAAAGAAACTGAATTTGGCGAATCGGTTTAATTTGATCT
GCGCGTACGGGTGTACAAATTATATTAACGTTATTGAAGGAAATGAACTC
GTGGCTGAAGGAGCTCTAAGTCTCGATGTCAAACTACCAGATACTTCTAA
ATTTACCGAATATTTTCTCAACAAAAAGCCCACAGCTAATTCGTTAGAAC
CTTTCAATATATATTGGGAAAGACTTTTTGATTGCTCTTTAAATCAAACG
AACATGCGAAAATACTTAAAAATGTGCACCATGAAGGAAAGTCTCAAACT
GGGGTCTGGATACTACATCAATACCCCCGTCCACACTGTCATTAATGCTG
TTTTTCATTTTGCACGTGTTGTCCACAGCTTCTCATTAGTTTATTGTCAC
GTGGATCGGAATTGGGTGAACAAGACAATGCCATGCCCTCTCGACCCTTC
AACTGCCAAATCCTACTCCATGTTTTTTCATCGCGTCCTAAAGAAAAGTG
CACACAAAGATGGGACGCTTTACACTGGCACTATTGAGCCGTTCACTATG
GGTGTTGGAAATGAAGTCGATGATGGTAAGGTCCAGTATGAAGTTCACAA
GTATTCGTTTAAAAATCGGGAAAACACGAATACAAAAATATGGCAATGGG
TTGCAGATCGTCAAAGTAAAAAACCGGGAGTCGGGAAATTTTTAGAAGCC
TGGTACTCGGCTTCGCCGAATATGACGATCGTGGAACATCGAGGAACGTG
CAGTAAAGAATGTCCTTTAGGATCAATTCGTGATTACGATCGAAACTCAT
TAAAATCAAAATGTTGCTGGTCGTGTCAAGCGTGTCCGAAAAATCACCGT
GTCATGAATAATACGTGTCAGCCGTGTAAGCAAGCCGAAGTTGTCGGACC
ACGGTTAATGGCAAAATACAACATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007699XLOC_007699Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013791-proteinTCONS_00013791-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013791-exon-sc0000173-1575043694:222890..222912TCONS_00013791-exon-sc0000173-1575043694:222890..222912Clytia hemisphaericaexon
TCONS_00013791-exon-sc0000173-1575043694:220726..222289TCONS_00013791-exon-sc0000173-1575043694:220726..222289Clytia hemisphaericaexon
TCONS_00013791-exon-sc0000173-1575043694:219656..219964TCONS_00013791-exon-sc0000173-1575043694:219656..219964Clytia hemisphaericaexon
TCONS_00013791-exon-sc0000173-1510915933:222890..222912TCONS_00013791-exon-sc0000173-1510915933:222890..222912Clytia hemisphaericaexon
TCONS_00013791-exon-sc0000173-1510915933:220726..222289TCONS_00013791-exon-sc0000173-1510915933:220726..222289Clytia hemisphaericaexon
TCONS_00013791-exon-sc0000173-1510915933:219656..219964TCONS_00013791-exon-sc0000173-1510915933:219656..219964Clytia hemisphaericaexon
TCONS_00013791-exon-sc0000173-1491911889:222890..222912TCONS_00013791-exon-sc0000173-1491911889:222890..222912Clytia hemisphaericaexon
TCONS_00013791-exon-sc0000173-1491911889:220726..222289TCONS_00013791-exon-sc0000173-1491911889:220726..222289Clytia hemisphaericaexon
TCONS_00013791-exon-sc0000173-1491911889:219656..219964TCONS_00013791-exon-sc0000173-1491911889:219656..219964Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000173supercontigsc0000173:219656..222912 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.0465913	0.00090897	0	0.135187	0.103571	0	0.0239655	0.260238	0	0	0	0	0	0.304061	0.0378073	0	0	0	0.0388543	3.81444e-10	0.0707949	2.7796e-05	0.451649	0.0869503	0.030775	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001828ANF_lig-bd_rcpt
IPR028082Peripla_BP_I
Blast
[Close]
BLAST of TCONS_00013791 vs. Swiss-Prot (Human)
Match: GRM4 (Metabotropic glutamate receptor 4 OS=Homo sapiens GN=GRM4 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 5.762e-31
Identity = 130/553 (23.51%), Postives = 225/553 (40.69%), Query Frame = 2 
Query:   26 NGTFLINGIFPITNENEELNP------QLGIMYSEAMKWAIQEVNKNRSYL-----------------HGYQFDVNKIYDSIKEEQVQKNV------LDTFMEKIPFLVGPYSSDTSYTSSILTKTFQDINGISYSATFSDFDMMNSDEERMLRTVPSDRFRVDAVLALIKDLRWNFVSVVSSYGYNGER--EALHLTSKISSVGACLAAQIDLAKSPTNEDYQKTIDNLRLDSRLKVVVLFTSGKDTRNFMAMLKKLNLANRFNLICAYGCTNYINVIEGNELVAEGALSLDVKLPDTSKFTEYFLNKKPTANSLEP-FNIYWERLFDCSLNQTNMRK--YLKMCTMKESLKLGSGYYINTPVHTVINAVFHFARVVHSFSLVYCHVDRNWVNKTMPCP-LDPSTAKSYSMFFHRVLKKSAHKDGTLYTGTIEPFTMGVGNEVDDGKVQYEVHKYSFKNRENTNTKIWQWVADRQSKK-----PGVGKFLEAWYSASPNMTIVEHRGTCSKECPLGSIRDYDRNSLKSKCCWSCQACPK-NHRVMNNTCQPC 1561
            +G   + G+FP+     E  P      + GI   EAM +A+  +N +   L                 H  +  +  +   I+++  +         + T  E++  ++G   S  S   + + + F+ I  ISY++T  D    NS  +   R VPSD ++  A++ +++ L+WN+VS V+S G  GE   EA    S+    G C+A  + + + P   ++ K I  L   S  + V++F +  D R  +   ++ N    F  + +    + I  +   E VAEGA+++  K      F  YF ++    N     F  +WE  F C L++  ++K  ++K CT +E +   S Y     V  VI+AV+     +H+     C        +   CP +DP           ++LK   + + +   G   P T    NE  D   +Y++++Y  +N       I  W      +      PG G+ L               R  CS  C  G   +  +      CCW C+ C    ++V   TC+ C
Sbjct:   46 DGDITLGGLFPVHGRGSEGKPCGELKKEKGIHRLEAMLFALDRINNDPDLLPNITLGARILDTCSRDTHALEQSLTFVQALIEKDGTEVRCGSGGPPIITKPERVVGVIGASGSSVSIMVANILRLFK-IPQISYASTAPDLSD-NSRYDFFSRVVPSDTYQAQAMVDIVRALKWNYVSTVASEGSYGESGVEAFIQKSR-EDGGVCIAQSVKIPREPKAGEFDKIIRRLLETSNARAVIIFANEDDIRRVLEAARRANQTGHFFWMGSDSWGSKIAPVLHLEEVAEGAVTILPKRMSVRGFDRYFSSRTLDNNRRNIWFAEFWEDNFHCKLSRHALKKGSHVKKCTNRERIGQDSAYEQEGKVQFVIDAVYAMGHALHAMHRDLCP------GRVGLCPRMDPVDGT-------QLLKYIRNVNFSGIAG--NPVTF---NENGDAPGRYDIYQYQLRNDSAEYKVIGSWTDHLHLRIERMHWPGSGQQLP--------------RSICSLPCQPG---ERKKTVKGMPCCWHCEPCTGYQYQVDRYTCKTC 560
The following BLAST results are available for this feature:
BLAST of TCONS_00013791 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GRM45.762e-3123.51Metabotropic glutamate receptor 4 OS=Homo sapiens ... [more]
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