TCONS_00013734 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013734
Unique NameTCONS_00013734
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length227

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013734 ID=TCONS_00013734|Name=TCONS_00013734|organism=Clytia hemisphaerica|type=transcript|length=227bp
TTTTAGGTCTAATAACACCACAACAGAAAAATGTCAGTTTCTTCGATTCC
CTCGATTCCATCGATTCCATCGGATGAAGAATGCGAGGAGATCCAACTCC
CTCCTGATGCAGAACGTCTCACTGAATGTCTCACGGTACTGGATACAATG
CTGGGTAGTTTAGAAGAAAGATTGGTCAAAACTGGCATAACTACATCATA
TAAAGGAGTTTGCGCACAATGTGAAAA
Run BLAST on NCBI

transcript from alignment at sc0000171:437329..441621-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013734 ID=TCONS_00013734|Name=TCONS_00013734|organism=Clytia hemisphaerica|type=transcript|length=4293bp|location=Sequence derived from alignment at sc0000171:437329..441621- (Clytia hemisphaerica)
TTTTAGGTCTAATAACACCACAACAGAAAAATGTCAGTTTCTTCGATTCC
CTCGATTCCATCGATTCCATCGGATGAAGAATGCGAGGAGATCCAACTCC
CTCCTGATGCAGAACGTCTCACTGAATGTCTCACGGTACTGGATACAATG
CTGGGTAGTTTAGAAGAAAGATTGGTCAAAACTGGCATAACTACATCATA
TAAAGGTAGCTCTCATTCAACTTCTGATGTCTACCAGATGTGAATGTTGT
ATTGTTTTAGTTAGTCTTTGTTTTTCAGATTTCGTAAAAGTTAAGTAACT
TAAGGGCTCTGACCATAGTCCAAAAATTGATTTTGGTATTTGAACATAAA
AGTTATATTTCATTTTCCTTAACACCTTTAACGAAAAATTGCCTTTATAA
ATTGCTTTTTAATCGAATCCCTTAAGAGTAATTGCCCCCGCAGGAGCGCA
GCGACGAGGAGGCACTCATAGCTTCACGCATAGATATTGGACTGGAATCT
CGAAATTTTGTTGTTTGTTGTCGCGCAAGCATCCCCGTAGTTAGTCTCTT
CCGTAAAATATTCGGGTTTTTTCGGTTGTANAGCTTCACGCATAGATATT
GGACTGGAATCTCGAAATTTTGTTGTTTGTTGTCGCGCAAGCATCCCCGT
AGTTAGTCTCTTCCGTAAAATATTCGGTTTTTTTCGGGACGGTTGTATAA
ATATTTTCATATTACGTTATTATATGCTATTACCATTATTACATATTACG
TGTTATTAGTTTTGATTTACCACTGAAAAGCTGAAGCGAGTGTTATAAAT
GCAAATTATAACAGGTGTATGATATAACACAAATTACAATATTACTTGTG
CATATCAAAACAAACAAAATGGCAGACTGATTATAATGATGAGCTGATTC
ATTGACTGGAAAAAGTGTTTGGTATGTCAAATTTAGTTTCTTGTCTTTGA
AACTGAATACTAACTACTGTTATTTAGTCAGAAGTTCACTTCAGCAATGA
TTTGAATTCTTTTTCCGGAATCTTTAAAGAAATTTACACAAGTTTTCNAG
GCGCATTTTAACTTTTCTCGACTGTACGTCTGAATGAAGCACAATGGCAT
TTCTTTATTTTTCTTTTGGCCAACAACATAGAAGATTTTGCTTGAGAAGT
GCAATCACAGCGTACACAAGTGGAGCCCGGGCCTTAAGTAGGATTGGTTT
CTATTTCACCCAATTTAAGATGGCACAGANATTTTATTAATAACTACCTT
TATTGTTTATAGGGCTTCTTGAGCTTTAAATACCATCATATGGTCGTAAC
TCGAGAAAGTCCTTCTTAACTTAGTAAAACAAAGATACCGGCAAAGTACA
AAAAAGTTGAATGACGTACGCATATGTAAAGTTGAATCCAAACGTGGTTG
AATGAATGTTGAATANATTTTATACGCAGTATCCTCTTGACTATTGTTTA
TTAGGCAAAGTAGCAACAGAGAAATGTTGAAATATAGCAGCCAATGAAAA
AAAACAAGTTATTTCTGATTGGTTGCCTTGTTGATTTATTCACCGCTANG
TTGAATGTCAATCAATGTAAACAAACTTTTTCTTTTGGTCTTCAAAATAA
TTTACCTCACTTAGAGTGTTTTTACTGTCTTTTCAGTGTGGTATTAAATC
TATTTCAAAAACCTGAAAAAAGTTTGTTTACTCGTTTAACTTTACATGCG
CACGTTCAACTTTTTCATGCAGTTTTGATAGCCTAAATAACTTACGCTCC
AGTGGTTTGGTGAAATAGCTCCAATTCTGGCTTTCCAAGTTAGTAGAGAC
CTTCCGNATATATTGTTGTAAGAAAGAAACTGGGAGAAAAAAAACAAACA
GGAGATGTGAAAACCAGTAAGCTAATGATACCATAATTTTTGAAATATAC
TTTTGAGAAGCTTTTCCTTAAATTTTATCAAATTATCAAGCTGTATTACA
TTGTATTGTATATGAATTCTTCAAGTATTGTGTTAATGGAATATAATTTT
TTTTTCAAGCATATGCCTCAATCAATTAATCAATCATTCAATAATTAAAT
CANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTCCTG
ATTATTTTTACTACTTTAATCTTTAAAGCATTAAAAGCTTTAAGTGCATG
ACATGATCTTCTGCGTGGGCATTTAGTGAAAGCTATGACTAGTCAAAAAT
TTAATTGCAAAAATGACGTTATGAACTTTAAAAATATGGTAATAATATGT
TGCATCACCCTCTTTTACAAAAAATGCTTATTTTTAATGGGTAATTAACT
TTTTTGAGTTATGACTGTTTTTTAAGCAAAATTCAGATAAACAATTGATG
AAAAACCACTATTTTGAAGATTTCGAGACAAAGAAGCATTTACAAAAATT
TTCCGCAAAAATTTTTATTGTTCGGTAAAAGATACACCATCTACTGCGAA
AATTTTTTCAAAATATTTTTTCTTCGCCGAAACTAAGCTCTTCAAAGTTG
AAATACTCTTCCTCACAAAAGTCTTCATTTTCTTTTTCATCAAATNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
AATTTTCAGATTCAGGAATAGTTTGTCTAACAGAAAATGTATAACATGCC
ATAGTTTTGTTGGTTACATCAGTCAGAAAACACATTTTAAACACGGCAAT
TTTGAAAAATTCACTATGGTCAGAGCCCTTAAGGAAAATCCGCCATTATA
GAATAACGCGTTCGAATTCGTAAAGTCGGTCGACGATCCTATCGTCTGCA
CAAGATCACTAAAAAAGGGAATAGTTTAGGAGAGGTGTGATAAATTCGGG
TGGAGTAAGCAGTGGCGGAGATGTTTACAGTGTAGACGATACCAATTTTG
TTCCAAAACTCTACCACCACTTTTTTCCCGTAAACCGCCCTGACGCCCGA
ACTTTTCCCGCGTTTACTGACCTTTAAACGGACGATAGCATCGTCTATAA
AGTCGGGCGCTCACGCCAATCGAAAGTGTTTCCATAATGGCAGAAATTAT
GTAGCTTAGAAAAGCTGAAAAACCTCTATTACTTTAGCTTCATTTTCCAT
GAGCCCAAGGATAGGTTTTGTAAAAAATATGTAATAGATTTGGTATATGA
CAGTGCCCGAATTTCGTCGGTCAGCCCCCAGACTTCGCCAAGTTCAAAAT
TTTGCTAAAAACAGGATAGAGACATATCCAAAACATGGAGGTATAAAGAA
ACAGGAGAAGTATGCTATTGTAACCATGCTCGCCCTACGATTAAAAAAAT
TACGAGGTATGCATGCTCATAATCTCATGTATCGTGCATTTTTAATGAGC
TCTTTTGTTGATAGGTGAAATCTTATTGGCTAACTTAAGTGTTGGAAATA
AGATGAGACGAGATTCATTGTTTCTGACATTGGTGTAAGAAAATATTTGG
ACTAAAAAAGGGCCTGTAAACTTTGCAATCTTTCATCAAATGACAAGATT
TTTCGATCAACATTTTCTTCAAGGTGAACCCTATTGCTTGATACTTTCCT
CCAAAATTCTCCAGCGACTTTTTGTCTACAAATTGGGTCTGAAATTGTGT
GTGCTTATAAAGAACTTTTTATTTTCTGGCTAGAGAAAATATCTTTTCAA
AACAAAATTTAATGGATGCCAAAATTGAACGCAAACTTATTTCGTGGAGC
TAAATTTTATTTTATTCTCGTATATTAGAAGGCTAGAAATCTTCGATGCT
GATAGTAAGAATGTTCAGAACAGACTACAGTTCTACTAAAAAGTCGTATT
TCGTCGGGCGAGCCTAGAATTTCTTTTGATTTATTACATAAAAGAAATCA
AAAGACTTTAACGACCAATTACCGACAAATTCATCTCCTGTCTTTCTTTA
TACCTCTATGTCCAAAACGAGTGTAATCTAGATACTTACTTTATCCACGG
TAAATACATCACATCGTTCGAAACATAATTTCAAGTTTTTTTGTTGTTTT
ATTCTTTTAAACAGGTTATCCCTTTTCGATAACAGTACATCGTTGGGAAT
AAATTTTTTGCAATAAATGTAAGAAAAAAACGATCACTTTCTTAGGTTTA
TCTCATTTCCATAAAAAATATCGTTGGAAAGCTTGTTACGAGATTATGAA
ATCACACGACTTATTTTTCAGGAGTTTGCGCACAATGTGAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007664XLOC_007664Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013734-exon-sc0000171-1575043694:441417..441621TCONS_00013734-exon-sc0000171-1575043694:441417..441621Clytia hemisphaericaexon
TCONS_00013734-exon-sc0000171-1575043694:437329..437350TCONS_00013734-exon-sc0000171-1575043694:437329..437350Clytia hemisphaericaexon
TCONS_00013734-exon-sc0000171-1510915933:441417..441621TCONS_00013734-exon-sc0000171-1510915933:441417..441621Clytia hemisphaericaexon
TCONS_00013734-exon-sc0000171-1510915933:437329..437350TCONS_00013734-exon-sc0000171-1510915933:437329..437350Clytia hemisphaericaexon
TCONS_00013734-exon-sc0000171-1491911889:441417..441621TCONS_00013734-exon-sc0000171-1491911889:441417..441621Clytia hemisphaericaexon
TCONS_00013734-exon-sc0000171-1491911889:437329..437350TCONS_00013734-exon-sc0000171-1491911889:437329..437350Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000171supercontigsc0000171:437329..441621 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0.711388	42.4789	33.1389	0	0.675198	0	0	25.4678	36.4676	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00013734 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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