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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013728 ID=TCONS_00013728|Name=TCONS_00013728|organism=Clytia hemisphaerica|type=transcript|length=2069bpRun BLAST on NCBI protein sequence of TCONS_00013728-protein >TCONS_00013728-protein ID=TCONS_00013728-protein|Name=TCONS_00013728-protein|organism=Clytia hemisphaerica|type=polypeptide|length=427bp MLGXKPIDKNLNLQHLALRKFSDKTNMLGYIYNSFTNWDYTHVASAVTCSRun BLAST on NCBI transcript from alignment at sc0000171:365696..378710- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00013728 ID=TCONS_00013728|Name=TCONS_00013728|organism=Clytia hemisphaerica|type=transcript|length=13015bp|location=Sequence derived from alignment at sc0000171:365696..378710- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000171:365696..378710- >TCONS_00013728 ID=TCONS_00013728|Name=TCONS_00013728|organism=Clytia hemisphaerica|type=CDS|length=10272bp|location=Sequence derived from alignment at sc0000171:365696..378710- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00013728 vs. Swiss-Prot (Human)
Match: ABHD3 (Phospholipase ABHD3 OS=Homo sapiens GN=ABHD3 PE=1 SV=2) HSP 1 Score: 306.605 bits (784), Expect = 2.980e-96 Identity = 147/368 (39.95%), Postives = 229/368 (62.23%), Query Frame = 2
Query: 671 TCSYFLYYFYKVVHRPALVAAEGPYKKMLHDQLTVLKEHFWPTFWAFNKHHQTICRVVFKSKPVLPYVRETLKTKDNGQISLDWVYNDDDNKLYHSMETRPTVIVLPGITGCYDASYVRHIVKEAKDLGYRSLVFNNRGLGRTELKTPRTFCACNVEDLEQVLDHTSQRFPKSPIYIFAVSLGGVILTNYLSRRSSEDKDFKTNIKAALIVSAPWCSFRTTDSLEEPVNWFLYNRWIVNKLKGLVKSNMQVFEEHTTLPYDINDVLKASSIREFDEAFTAKTFGFASHKEYYTESSLVLKPLEHIKIPMLYLNARDDPFAPIESIPLDSIKKNPNMAIILTDYGGHIGFVEGAFVRGRSLVERLFNQY 1774
+ +Y YY + +P LV + + L D V+ E ++PT W + QT+ R SKP + Y E +KT D GQISLDW +++D++ Y TRPT+++LPG+TG SY+ H++ +++LGYR +VFNNRG+ L TPRT+C N EDLE V+ H +P +P VS+GG++L NYL + S KT + AA S W +F ++SLE+P+NW L+N ++ L+ V + +F + D++ V+KA SIREFD+ FT+ FG+ + +YYT++S + L+ + IP+L LN+ DD F+P +IP+++ K+NPN+A++LT YGGHIGF+EG + R + ++R+F Q+
Sbjct: 41 SVAYAFYYLSSIAKKPQLVTGGESFSRFLQDHCPVVTETYYPTVWCWEGRGQTLLRPFITSKPPVQYRNELIKTADGGQISLDW-FDNDNSTCYMDASTRPTILLLPGLTGTSKESYILHMIHLSEELGYRCVVFNNRGVAGENLLTPRTYCCANTEDLETVIHHVHSLYPSAPFLAAGVSMGGMLLLNYLGKIGS-----KTPLMAAATFSVGWNTFACSESLEKPLNWLLFNYYLTTCLQSSVNKHRHMFVKQV----DMDHVMKAKSIREFDKRFTSVMFGYQTIDDYYTDASPSPR-LKSVGIPVLCLNSVDDVFSPSHAIPIETAKQNPNVALVLTSYGGHIGFLEGIWPRQSTYMDRVFKQF 397 The following BLAST results are available for this feature:
BLAST of TCONS_00013728 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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