TCONS_00013726 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013726
Unique NameTCONS_00013726
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1358

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013726 ID=TCONS_00013726|Name=TCONS_00013726|organism=Clytia hemisphaerica|type=transcript|length=1358bp
TCTCCTCAAAGCTTAAGAATAATACATAGAAAgtagaaataataaaaaac
atgaatttgtttgtttattggATACATCTTGCAATGAAAAACACGagggg
aaaaaaagaaaaggtatggatgcaaaaaattctttgtttatATTCCTAAT
cggttggaaaattttgaacCTGTTAGAATGACTGTTCTTGATGATAATGC
AATTGGGTTGAGGTTTTTATATGATGTTTAcataattagttattcaaaac
aataaagatgacgcgttctttagaaaacatGTAATAAGAGCTTTGTctga
atagttaacgaccaatccaatgacgAGAATTCTTGCAAAATGTTCTTCTC
GACCCGATAAATGCTCTTCAAAAGACTCCCTTGCAGTCGTGTAGGATATA
TATAATATGGTTGTCCGAAGTGGTGTAACGATCAACAATAACTCAGATGT
AATAGGCTCTTTTCGATTTTATTTAGCATCAGGGTTCCTAATTTTTGATT
GCCTCTATCCTATGCTCGAGAAGGGATGCGTAATCTCCTCCgaataaaat
gataaaacaaataATGTAAGAAAACTCTCATACCTCTGTAAGTGGCATAT
GCAACAGAGCAGTGATACTAATTAATCGCCAATCGATATCTGCATCNATG
TAAGAAAACTCCCATACCTCTGGAAATGGCATATGCAACAGAGCAGTGAT
ACCATGATAATTGTCAAACGATATCTGCATTCACGCAAACGATATCTTTA
AAAAGGTATTGCAACAGGATACCAAAAACTGATATGAGCAACGAGGCATT
CATATCCACAAATATGCAACATATGTGCATCATAATCTCAAAACACTGAT
ATCTGCAACAGAGCACGATAACCACAAATTGATAATAATGTCGGTACCAG
CAAATATAGCATCGATACCATGATTCGGTTGTTCTCAATTTTTACAcCTT
GTTTCATGAACGTCATGGCAGATATATTTTCTCCAGCTTCAAGCGGTTCT
ATGGCatcattcaaattttcaataacttcTAGTGTGTTCTTAAATTGATC
CTCATGCTTTGAAAAGGTTGTCTGGtcgtaaaatcttttttcttcgaGCC
TCTGCTTCAGCTGTGCCAAAATCTCTTTTATAATGTTTTTCAAGTCTTTG
TTTTGTGCCATAACTTCTTTTCTCAACTACAACTTTTTGCAAGAGCGagg
attttgaaatgaaaacacGAGACATTTAAACACGCATTTCTGACGCATGC
GCGCAGCTTGTCCCAATCTGCGCAAAGATCATCAAGCAGCTTTGCGTGCG
AAACCGTTGAGAAACTCGTTTCCCGTCTTTCTTCGATCGCCGAGAAACAC
GCTTgctt
Run BLAST on NCBI

transcript from alignment at sc0000171:357272..360933-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013726 ID=TCONS_00013726|Name=TCONS_00013726|organism=Clytia hemisphaerica|type=transcript|length=3662bp|location=Sequence derived from alignment at sc0000171:357272..360933- (Clytia hemisphaerica)
TCTCCTCAAAGCTTAAGAATAATACATAGAAAGTAGAAATAATAAAAAAC
ATGAATTTGTTTGTTTATTGGATACATCTTGCAATGAAAAACACGAGGGG
AAAAAAAGAAAAGGTATGGATGCAAAAAATTCTTTGTTTATATTCCTAAT
CGGTTGGAAAATTTTGAACCTGTTAGAATGACTGTTCTTGATGATAATGC
AATTGGGTTGAGGTTTTTATATGATGTTTACATAATTAGTTATTCAAAAC
AATAAAGATGACGCGTTCTTTAGAAAACATGTAATAAGAGCTTTGTCTGA
ATAGTTAACGACCAATCCAATGACGAGAATTCTTGCAAAATGTTCTTCTC
GACCCGATAAATGCTCTTCAAAAGACTCCCTTGCAGTCGTGTAGGATATA
TATAATATGGTTGTCCGAAGTGGTGTAACGATCAACAATAACTCAGATGT
AATAGGCTCTTTTCGATTTTATTTAGCATCAGGGTTCCTAATTTTTGATT
GCCTCTATCCTATGCTCGAGAAGGGATGCGTAATCTCCTCCGAATAAAAT
GATAAAACAAATAATGTAAGAAAACTCTCATACCTCTGTAAGTGGCATAT
GCAACAGAGCAGTGATACTAATTAATCGCCAATCGATATCTGCATCNATG
TAAGAAAACTCCCATACCTCTGGAAATGGCATATGCAACAGAGCAGTGAT
ACCATGATAATTGTCAAACGATATCTGCATTCACGCAAACGATATCTTTA
AAAAGGTATTGCAACAGGATACCAAAAACTGATATGAGCAACGAGGCATT
CATATCCACAAATATGCAACATATGTGCATCATAATCTCAAAACACTGAT
ATCTGCAACAGAGCACGATAACCACAAATTGATAATAATGTCGGTACCAG
CAAATATAGCATCGATACCATGATTCGGTTGTTCTCAATTTTTACACATG
AAAATGAGAAAACAAATTACAAGATTGCATCATGAAAAACTTGGATCAAA
AAAAAGAACAAACATGCTCTTGCCTTTAGAGCCAATTACACAACAAAGAA
ATAAGCATTTCCAATAGTTGTTCAGTAGAGTAGAAAATTATAAACGGGCA
GTATGCATTGAAAAAATGTATTATTCGTCTTCGGATGTGATGTAGCGCTA
ACGAGTAAGAATTAGCCAAAAAACCATAAAAAATTACAACTAGTTAGAAC
TGTTAATAAAATAAGAACACAAGAAAATGATTGACAATGGCTTCNTGACG
AGTAAGAATTAGCGAAAACCATCAAAAATTATAACTAATGTGAGAATTGT
TAATAAAATAAGGATCTAACACAAGAAATTGCTTAACCAAAGGCTTGAAT
TCCTTTCCATTGGAACTTATCATAGTTTCTGACCTTTTATTGCTTCTATC
CTTTGCTCAAGAAGGGATGCGTAATCTCCTCCGAATAAATTGATAAAACA
TAATGTAAGAAAACTCCCATACCTCTGGAAATGGCATATGCAACAGAGCA
GTGATACCATGATAATTGTCAAACGATATCTGCATTCACGCAAACGATAT
CTTTAAAAAGGTATTGCAACAGAGCACGATACCAAAAACTGATATGAGCA
ACGAGGCATTCATATCCACAAATATGCAACATATGTGCATCATAATCTCA
AAACACTGATATCTGCAACAGAGCACGATACCAAAAACTGATATGAGCAA
CGAGGCATTCATATCCACAAATATGCAACATATGTGCATCATAATCTCAA
AACACTGATATCTGCAACAGAGCACGATACCAAAAACTGATATGAGCAAC
GAGGCATTCATATCCACAAATATGCAACATATGTGCATCATAATCTCAAA
ACACTGATATCTGCAACAGAGCACGATACCAAAAACTGATATGAGCAACG
AGGCATTCATATCCACAAATATGCAACATATGTGCATCATAATCTCAAAA
CACTGATATCTGCAACAGAGCACGATACCAAAAACTGATATGAGCAACGA
GGCATTCATATCCACAAATATGCAACATATGTGCATCATAATCTCAAAAC
ACTGATATCTGCAACAGAGCACGATAGCCAGAAATTGATAATAATGTCGG
TACCAGCAAATATAGCATCGATACCATGATTCGGTTGTTCTCAATTTTTA
CACATGAAAATGAGAAAACAAATTACAAGATTACATCATAAAAAACCTGG
ATCGAAAAAAGAACAAACTATGTTCTCGCCTCTAGTGTCAAGTACACAAC
AACAAAATAAGCATTTCCAATAATCGTTCAGCAGAGTAAAAAAAAAAACA
TATAAACAGGGACAGAGAAGCATTGAAAAAATGTCTAAATGTCAACCAAA
AATAAGCAGATTGCCATAACGGTATAAAAAGAATACTTTTCTCTTGACAG
TTTTTCAGATGTTTGATGGTTTTCCCGACTAAAGAAATTGGAGGACATAA
CCAATTAAGTTTATCTTTTCCCTAATGGCAAGCGAATGTATTCATACCAG
TAGATGAGTTTGTTGACTTCGTATTTAAATTATTTGCAAATCGATCTATT
AATCGACCCGAAATGTGAAATTATAGGAAAATCTTANTGAGTTTGTTGAC
TTCGTATTTAAATTATTTGCAAATCGATCTATTAATCGACCCGAGATATG
AAATTATAGGAAAATCTTAATGTCGATGAACCAATTATCGGTATCTATAG
ATTTTGAACTGATGTCAGCCGATTTGTTCTCTTCCCTTGGGATCCATGTA
AGAAAGAAAAAAATGTTATTCGCGATGTTATTGATAACTCAACCGTCGAA
AGCAATTAGAAAAAATATAAAAACACAATGTTTCCTTTATGTTTATTATG
TTCAGTTAATCACTAATTTCTTCTGCTTTTTGATTTTGATGATACGAATT
TGATGAGCTGTGTTTGCTAGAACTCGTTGTTGTTGATGAACTTTTTGACA
ATTCGGGACTTGTGGCTGTTCCTTTTGCACAAAATGTCGAATAATGTCCA
ACTTTTTGCAATTGTAGCACGCAACATCATTAAAAACAAGATGACGAGTT
TATCTTTCTCTGTTCAATCTCTATGTTTTGTTTTATTCTTTCGGCAGATT
TTCTGGCCTCTTTCAAATGTTTTTCTTTCATTTCCCCATTCGAAAGCAAC
AGATTTTGTCAACAGATTTTGTCCACAAAGTTTCACCACTGTCCATCCTT
CCCTGTCAGCAAGCCTTAGCATTTGAATCCTATCTTCTAAAAAGAACTTA
CCTTGTTTCATGAACGTCATGGCAGATATATTTTCTCCAGCTTCAAGCGG
TTCTATGGCATCATTCAAATTTTCAATAACTTCTAGTGTGTTCTTAAATT
GATCCTCATGCTTTGAAAAGGTTGTCTGGTCGTAAAATCTTTTTTCTTCG
AGCCTCTGCTTCAGCTGTGCCAAAATCTCTTTTATAATGTTTTTCAAGTC
TTTGTTTTGTGCCATAACTTCTTTTCTCAACTACAACTTTTTGCAAGAGC
GAGGATTTTGAAATGAAAACACGAGACATTTAAACACGCATTTCTGACGC
ATGCGCGCAGCTTGTCCCAATCTGCGCAAAGATCATCAAGCAGCTTTGCG
TGCGAAACCGTTGAGAAACTCGTTTCCCGTCTTTCTTCGATCGCCGAGAA
ACACGCTTGCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007661XLOC_007661Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013726-exon-sc0000171-1575043694:359987..360933TCONS_00013726-exon-sc0000171-1575043694:359987..360933Clytia hemisphaericaexon
TCONS_00013726-exon-sc0000171-1575043694:357272..357682TCONS_00013726-exon-sc0000171-1575043694:357272..357682Clytia hemisphaericaexon
TCONS_00013726-exon-sc0000171-1510915933:359987..360933TCONS_00013726-exon-sc0000171-1510915933:359987..360933Clytia hemisphaericaexon
TCONS_00013726-exon-sc0000171-1510915933:357272..357682TCONS_00013726-exon-sc0000171-1510915933:357272..357682Clytia hemisphaericaexon
TCONS_00013726-exon-sc0000171-1491911889:359987..360933TCONS_00013726-exon-sc0000171-1491911889:359987..360933Clytia hemisphaericaexon
TCONS_00013726-exon-sc0000171-1491911889:357272..357682TCONS_00013726-exon-sc0000171-1491911889:357272..357682Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000171supercontigsc0000171:357272..360933 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.73884e-06	0.413543	1.05972	0	0	0	0	0	4.64129	1.72079	2.59777	1.96557	0	0.786487	0.864596	0.513859	0	0.272022	0	0	0	0	0	1.95627	0	0	0	0	1.53952	1.99719
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00013726 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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