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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013684 ID=TCONS_00013684|Name=TCONS_00013684|organism=Clytia hemisphaerica|type=transcript|length=2594bpRun BLAST on NCBI protein sequence of TCONS_00013684-protein >TCONS_00013684-protein ID=TCONS_00013684-protein|Name=TCONS_00013684-protein|organism=Clytia hemisphaerica|type=polypeptide|length=502bp MSSSRSLKKLSEESLNKPAEEVFNVLAKLGEGAYGSVYKALHKESGEVLARun BLAST on NCBI transcript from alignment at sc0000171:379935..396339+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00013684 ID=TCONS_00013684|Name=TCONS_00013684|organism=Clytia hemisphaerica|type=transcript|length=16405bp|location=Sequence derived from alignment at sc0000171:379935..396339+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000171:379935..396339+ >TCONS_00013684 ID=TCONS_00013684|Name=TCONS_00013684|organism=Clytia hemisphaerica|type=CDS|length=24144bp|location=Sequence derived from alignment at sc0000171:379935..396339+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00013684 vs. Swiss-Prot (Human)
Match: STK3 (Serine/threonine-protein kinase 3 OS=Homo sapiens GN=STK3 PE=1 SV=2) HSP 1 Score: 583.563 bits (1503), Expect = 0.000e+0 Identity = 307/493 (62.27%), Postives = 374/493 (75.86%), Query Frame = 1
Query: 343 KPAEEVFNVLAKLGEGAYGSVYKALHKESGEVLAIKQVPVDTDLQEIIKEISIMQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDCMRLRNKTLTEDEIACICRDTLNGLEYLHFRRKIHRDVKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCKADIWSLGITTLEMAEGKPPHADIHPMRAIFMIPTKPPPTFKHPERWSTDMKDFVSKCLVKNPEERLSATSLLQHPFIRNAKPVDVLSPMLAEAMQRRXXXXXXXXXXXXXXXXXXXSQEEPFGGVDSGTMMLN--EDMGTMVLNDAGDAQDGTMIINSGTMLMNDGTMIENSLGTMVIN---DAEDDSTMKSVVESTSAASNQQDYRPAYLDHFEKIDQQNXXXXXXXXXXXXXXXXXXSDGGPNFPGKFLGPI--DFEFLKSLTYEELKQRMGSLDTDMEREIEELRKRYQSKRHPIIEAMELKRKRQPQF 1800
K EEVF+VL KLGEG+YGSV+KA+HKESG+V+AIKQVPV++DLQEIIKEISIMQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSD +RLRNKTL EDEIA I + TL GLEYLHF RKIHRD+KAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGY+C ADIWSLGIT++EMAEGKPP+ADIHPMRAIFMIPT PPPTF+ PE WS D DFV KCLVKNPE+R +AT LLQHPFI+NAKPV +L ++ EAM+ + + H E+ ++E+ E + D E +DS TM+ E +GTM TM + TM+ ++ TM+E+ LGTMVIN + E+D TMK A++ Q RP+++D+F+K D +N+ + + + FP + P DF+FLK+L+ EEL+ R+ +LD MEREIEELR+RY +KR PI++AM+ K++RQ F
Sbjct: 21 KQPEEVFDVLEKLGEGSYGSVFKAIHKESGQVVAIKQVPVESDLQEIIKEISIMQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIIRLRNKTLIEDEIATILKSTLKGLEYLHFMRKIHRDIKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYNCVADIWSLGITSIEMAEGKPPYADIHPMRAIFMIPTNPPPTFRKPELWSDDFTDFVKKCLVKNPEQRATATQLLQHPFIKNAKPVSILRDLITEAMEIKAKRHEEQQRELEEEEENSDEDE-----LDSHTMVKTSVESVGTM-------RATSTMSEGAQTMIEHNSTMLESDLGTMVINSEDEEEEDGTMK------RNATSPQVQRPSFMDYFDKQDFKNKSHENCNQNMHEPFPMSKN----VFPDNWKVPQDGDFDFLKNLSLEELQMRLKALDPMMEREIEELRQRYTAKRQPILDAMDAKKRRQQNF 491 The following BLAST results are available for this feature:
BLAST of TCONS_00013684 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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