TCONS_00013679 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013679
Unique NameTCONS_00013679
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3580

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013679 ID=TCONS_00013679|Name=TCONS_00013679|organism=Clytia hemisphaerica|type=transcript|length=3580bp
aagcAAGCGTGTTTCTCGGCGATCGAAGAAAGACGGGAAACGAGTTTCTC
AACGGTTTCGCACGCAAAGCTGCTTGATGATCTTTGCGCAGATTGGGACA
AGCTGCGCGCATGCGTCAGAAATGCGTGTTTAAATGTCTCgtgttttcat
ttcaaaatcctCGCTCTTGCAAAAAGTTGTAGTTGAGAAAAGAAGTTATG
GCACAAAACAAAGACTTGAAAAACATTATAAAAGAGATTTTGGCACAGCT
GAAGCAGAGGCtcgaagaaaaaagattttacgaCCAGACAACCTTTTCAA
AGCATGAGGATCAATTTAAGAACACACTAgaagttattgaaaatttgaat
gatGCCATAGAACCGCTTGAAGCTGGAGAAAATATATCTGCCATGACGTT
CATGAAACAAGGTAAGTTCTTTTTAGAAGATAGGATTCAAATGCTAAGGC
TTGCTGACAGGGAAGGATGGACAGTGGTGAAACTTTGTGGACAAAATCTG
TTGACAAAATCTGTTGCTTTCGAATGgggaaatgaaagaaaaacatttga
aagagGCCAGAAAATCTGCCGaaagaataaaacaaaacaTAGAGATTGAA
CAGAGAAAGATAAACTCGTCATCTTGTTTTTAATGATGTTGCGTGCTACA
ATTGCAAAAAGTTGGACATTATTCGACATTTTGTGCAAAAGGAACAGCCA
CAAGTCCCGAATTGTCAAAAAGTTCATCAACAACAACGAGTTCTAGCAAA
CACAGCTCATCAAATTCGtatcatcaaaatcaaaaagcaGAAGAAATTAG
TGATTAACTGAACATAATAAACATAAAGGAAACAttgtgtttttatattt
tttctaattgCTTTCGACGGTTGAGTTATCAATAACATCGCgaataacat
ttttttctttcttacatGGATCCCAAGGGAAGAGAACAAATCGGCTGACA
TCAGTTCAAAATCTATAGATACCGATAATTGGTTCATCGACATTAAGATT
TTCCTATAATTTCATATCTCGGGTCGATTAATAGATCGATTTGCAAATAA
TTTAAATACGAAGTCAACAAACTCANTAAGATTTTCCTATAATTTCACAT
TTCGGGTCGATTAATAGATCGATTTGCAAATAATTTAAATACGAAGTCAA
CAAACTCATCTACTGGTATGAATACATTCGCTTGCCATTAGGGAAAAGAT
AAACTTAATTGGTTATGTCCTCCAATTTCTTTAGTCGGGAAAACCATCAA
ACATCTGAAAAACTGTCAAGAGAAAAGTATTCTTTTTATACCGTTATGGC
AATCTGCTTATTTTTGGTTGACATTTAGACATTTTTTCAATGCTTCTCTG
TCCCtgtttatatgtttttttttttactctgcTGAACGATTATTGGAAAT
GCTTATTTTGTTGTTGTGTACTTGACACTAGAGGCGAgaacatagtttgt
tcttttttcgaTCCAGGTTTTTTATGATGTAATCTTGTAAtttgttttct
cattttcatgTGTAAAAATTGAGAACAACCGAATCATGGTATCGATGCTA
TATTTGCTGGTACCGACATTATTATCAATTTCTGGCTATCGTGCTCTGTT
GCAGATATCAGTGTTTTGAGATTATGATGCACATATGTTGCATATTTGTG
GATATGAATGCCTCGTTGCTCATATCAGTTTTTGGTATCGTGCTCTGTTG
CAGATATCAGTGTTTTGAGATTATGATGCACATATGTTGCATATTTGTGG
ATATGAATGCCTCGTTGCTCATATCAGTTTTTGGTATCGTGCTCTGTTGC
AGATATCAGTGTTTTGAGATTATGATGCACATATGTTGCATATTTGTGGA
TATGAATGCCTCGTTGCTCATATCAGTTTTTGGTATCGTGCTCTGTTGCA
GATATCAGTGTTTTGAGATTATGATGCACATATGTTGCATATTTGTGGAT
ATGAATGCCTCGTTGCTCATATCAGTTTTTGGTATCGTGCTCTGTTGCAG
ATATCAGTGTTTTGAGATTATGATGCACATATGTTGCATATTTGTGGATA
TGAATGCCTCGTTGCTCATATCAGTTTTTGGTATCGTGCTCTGTTGCAAT
ACCTTTTTAAAGATATCGTTTGCGTGAATGCAGATATCGTTTGACAATTA
TCATGGTATCACTGCTCTGTTGCATATGCCATTTCCAGAGGTATGGGAGT
TTTCTTACATTATGTTTTATCAATTTATTCGGAGGAGATTACGCATCCCT
TCTTGAGCAAAGGATAGAAGCAATAAAAGGTCAGAAACTATGATAAGTTC
CAATGGAAAGGAATTCAAGCCTTTGGTTAAGCAATTTCTTGTGTTAGATC
CTTATTTTATTAACAATTCTCACATTAGTTATAATTTTTGATGGTTTTCG
CTAATTCTTACTCGTCANGAAGCcattgtcaatcattttcttgtGTTCTT
ATTTTATTAACAGTTCTAACTAGTTGTAattttttatggttttttgGCTA
ATTCTTACTCGTTAGCGCTACATCACATCCGAAGACGAATAATACATTTT
TTCAATGCATACTGCCCGTTTATAATTTTCTACTCTACTGAACAACTATT
GGAAATGCTTATTTCTTTGTTGTGTAATTGGCTCTAAAGGCAAGAGCatg
tttgttcttttttttgatccaagtttttcatgatgcaatcttgtaatttg
ttttctcattttcatgTGTAAAAATTGAGAACAACCGAATCATGGTATCG
ATGCTATATTTGCTGGTACCGACATTATTATCAATTTGTGGTTATCGTGC
TCTGTTGCAGATATCAGTGTTTTGAGATTATGATGCACATATGTTGCATA
TTTGTGGATATGAATGCCTCGTTGCTCATATCAGTTTTTGGTATCCTGTT
GCAATACCTTTTTAAAGATATCGTTTGCGTGAATGCAGATATCGTTTGAC
AATTATCATGGTATCACTGCTCTGTTGCATATGCCATTTCCAGAGGTATG
GGAGTTTTCTTACATtatttgttttatcattttattcGGAGGAGATTACG
CATCCCTTCTCGAGCATAGGATAGAGGCAATCAAAAATTAGGAACCCTGA
TGCTAAATAAAATCGAAAAGAGCCTATTACATCTGAGTTATTGTTGATCG
TTACACCACTTCGGACAACCATATTATATATATCCTACACGACTGCAAGG
GAGTCTTTTGAAGAGCATTTATCGGGTCGAGAAGAACATTTTGCAAGAAT
TCTcgtcattggattggtcgttaactattcagACAAAGCTCTTATTACat
gttttctaaagaacgcgtcatctttattgttttgaataactaattatgTA
AACATCATATAAAAACCTCAACCCAATTGCATTATCATCAAGAACAGTCA
TTCTAACAGgttcaaaattttccaaccgATTAGGAATataaacaaagaat
tttttgcatccataccttttctttttttcccctCGTGTTTTTCATTGCAA
GATGTATccaataaacaaacaaattcatgttttttattatttctacTTTC
TATGTATTATTCTTAAGCTTTGAGGAGANN
Run BLAST on NCBI

transcript from alignment at sc0000171:357272..360935+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013679 ID=TCONS_00013679|Name=TCONS_00013679|organism=Clytia hemisphaerica|type=transcript|length=3664bp|location=Sequence derived from alignment at sc0000171:357272..360935+ (Clytia hemisphaerica)
aagcAAGCGTGTTTCTCGGCGATCGAAGAAAGACGGGAAACGAGTTTCTC
AACGGTTTCGCACGCAAAGCTGCTTGATGATCTTTGCGCAGATTGGGACA
AGCTGCGCGCATGCGTCAGAAATGCGTGTTTAAATGTCTCgtgttttcat
ttcaaaatcctCGCTCTTGCAAAAAGTTGTAGTTGAGAAAAGAAGTTATG
GCACAAAACAAAGACTTGAAAAACATTATAAAAGAGATTTTGGCACAGCT
GAAGCAGAGGCtcgaagaaaaaagattttacgaCCAGACAACCTTTTCAA
AGCATGAGGATCAATTTAAGAACACACTAgaagttattgaaaatttgaat
gatGCCATAGAACCGCTTGAAGCTGGAGAAAATATATCTGCCATGACGTT
CATGAAACAAGGTAAGTTCTTTTTAGAAGATAGGATTCAAATGCTAAGGC
TTGCTGACAGGGAAGGATGGACAGTGGTGAAACTTTGTGGACAAAATCTG
TTGACAAAATCTGTTGCTTTCGAATGgggaaatgaaagaaaaacatttga
aagagGCCAGAAAATCTGCCGaaagaataaaacaaaacaTAGAGATTGAA
CAGAGAAAGATAAACTCGTCATCTTGTTTTTAATGATGTTGCGTGCTACA
ATTGCAAAAAGTTGGACATTATTCGACATTTTGTGCAAAAGGAACAGCCA
CAAGTCCCGAATTGTCAAAAAGTTCATCAACAACAACGAGTTCTAGCAAA
CACAGCTCATCAAATTCGtatcatcaaaatcaaaaagcaGAAGAAATTAG
TGATTAACTGAACATAATAAACATAAAGGAAACAttgtgtttttatattt
tttctaattgCTTTCGACGGTTGAGTTATCAATAACATCGCgaataacat
ttttttctttcttacatGGATCCCAAGGGAAGAGAACAAATCGGCTGACA
TCAGTTCAAAATCTATAGATACCGATAATTGGTTCATCGACATTAAGATT
TTCCTATAATTTCATATCTCGGGTCGATTAATAGATCGATTTGCAAATAA
TTTAAATACGAAGTCAACAAACTCANTAAGATTTTCCTATAATTTCACAT
TTCGGGTCGATTAATAGATCGATTTGCAAATAATTTAAATACGAAGTCAA
CAAACTCATCTACTGGTATGAATACATTCGCTTGCCATTAGGGAAAAGAT
AAACTTAATTGGTTATGTCCTCCAATTTCTTTAGTCGGGAAAACCATCAA
ACATCTGAAAAACTGTCAAGAGAAAAGTATTCTTTTTATACCGTTATGGC
AATCTGCTTATTTTTGGTTGACATTTAGACATTTTTTCAATGCTTCTCTG
TCCCtgtttatatgtttttttttttactctgcTGAACGATTATTGGAAAT
GCTTATTTTGTTGTTGTGTACTTGACACTAGAGGCGAgaacatagtttgt
tcttttttcgaTCCAGGTTTTTTATGATGTAATCTTGTAAtttgttttct
cattttcatgTGTAAAAATTGAGAACAACCGAATCATGGTATCGATGCTA
TATTTGCTGGTACCGACATTATTATCAATTTCTGGCTATCGTGCTCTGTT
GCAGATATCAGTGTTTTGAGATTATGATGCACATATGTTGCATATTTGTG
GATATGAATGCCTCGTTGCTCATATCAGTTTTTGGTATCGTGCTCTGTTG
CAGATATCAGTGTTTTGAGATTATGATGCACATATGTTGCATATTTGTGG
ATATGAATGCCTCGTTGCTCATATCAGTTTTTGGTATCGTGCTCTGTTGC
AGATATCAGTGTTTTGAGATTATGATGCACATATGTTGCATATTTGTGGA
TATGAATGCCTCGTTGCTCATATCAGTTTTTGGTATCGTGCTCTGTTGCA
GATATCAGTGTTTTGAGATTATGATGCACATATGTTGCATATTTGTGGAT
ATGAATGCCTCGTTGCTCATATCAGTTTTTGGTATCGTGCTCTGTTGCAG
ATATCAGTGTTTTGAGATTATGATGCACATATGTTGCATATTTGTGGATA
TGAATGCCTCGTTGCTCATATCAGTTTTTGGTATCGTGCTCTGTTGCAAT
ACCTTTTTAAAGATATCGTTTGCGTGAATGCAGATATCGTTTGACAATTA
TCATGGTATCACTGCTCTGTTGCATATGCCATTTCCAGAGGTATGGGAGT
TTTCTTACATTATGTTTTATCAATTTATTCGGAGGAGATTACGCATCCCT
TCTTGAGCAAAGGATAGAAGCAATAAAAGGTCAGAAACTATGATAAGTTC
CAATGGAAAGGAATTCAAGCCTTTGGTTAAGCAATTTCTTGTGTTAGATC
CTTATTTTATTAACAATTCTCACATTAGTTATAATTTTTGATGGTTTTCG
CTAATTCTTACTCGTCANGAAGCcattgtcaatcattttcttgtGTTCTT
ATTTTATTAACAGTTCTAACTAGTTGTAattttttatggttttttgGCTA
ATTCTTACTCGTTAGCGCTACATCACATCCGAAGACGAATAATACATTTT
TTCAATGCATACTGCCCGTTTATAATTTTCTACTCTACTGAACAACTATT
GGAAATGCTTATTTCTTTGTTGTGTAATTGGCTCTAAAGGCAAGAGCatg
tttgttcttttttttgatccaagtttttcatgatgcaatcttgtaatttg
ttttctcattttcatgTGTAAAAATTGAGAACAACCGAATCATGGTATCG
ATGCTATATTTGCTGGTACCGACATTATTATCAATTTGTGGTTATCGTGC
TCTGTTGCAGATATCAGTGTTTTGAGATTATGATGCACATATGTTGCATA
TTTGTGGATATGAATGCCTCGTTGCTCATATCAGTTTTTGGTATCCTGTT
GCAATACCTTTTTAAAGATATCGTTTGCGTGAATGCAGATATCGTTTGAC
AATTATCATGGTATCACTGCTCTGTTGCATATGCCATTTCCAGAGGTATG
GGAGTTTTCTTACATNGATGCAGATATCGATTGGCGATTAATTAGTATCA
CTGCTCTGTTGCATATGCCACTTACAGAGGTATGAGAGTTTTCTTACATt
atttgttttatcattttattcGGAGGAGATTACGCATCCCTTCTCGAGCA
TAGGATAGAGGCAATCAAAAATTAGGAACCCTGATGCTAAATAAAATCGA
AAAGAGCCTATTACATCTGAGTTATTGTTGATCGTTACACCACTTCGGAC
AACCATATTATATATATCCTACACGACTGCAAGGGAGTCTTTTGAAGAGC
ATTTATCGGGTCGAGAAGAACATTTTGCAAGAATTCTcgtcattggattg
gtcgttaactattcagACAAAGCTCTTATTACatgttttctaaagaacgc
gtcatctttattgttttgaataactaattatgTAAACATCATATAAAAAC
CTCAACCCAATTGCATTATCATCAAGAACAGTCATTCTAACAGgttcaaa
attttccaaccgATTAGGAATataaacaaagaattttttgcatccatacc
ttttctttttttcccctCGTGTTTTTCATTGCAAGATGTATccaataaac
aaacaaattcatgttttttattatttctacTTTCTATGTATTATTCTTAA
GCTTTGAGGAGANN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007645XLOC_007645Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013679-exon-sc0000171-1491911889:357272..360284TCONS_00013679-exon-sc0000171-1491911889:357272..360284Clytia hemisphaericaexon
TCONS_00013679-exon-sc0000171-1510915933:357272..360284TCONS_00013679-exon-sc0000171-1510915933:357272..360284Clytia hemisphaericaexon
TCONS_00013679-exon-sc0000171-1575043694:357272..360284TCONS_00013679-exon-sc0000171-1575043694:357272..360284Clytia hemisphaericaexon
TCONS_00013679-exon-sc0000171-1491911889:360369..360935TCONS_00013679-exon-sc0000171-1491911889:360369..360935Clytia hemisphaericaexon
TCONS_00013679-exon-sc0000171-1510915933:360369..360935TCONS_00013679-exon-sc0000171-1510915933:360369..360935Clytia hemisphaericaexon
TCONS_00013679-exon-sc0000171-1575043694:360369..360935TCONS_00013679-exon-sc0000171-1575043694:360369..360935Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000171supercontigsc0000171:357272..360935 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
9.23507	9.2952	4.34799	2.70091	1.9132	0.645945	4.80717	5.39868	12.2632	6.89993	6.15492	12.7004	1.58487	1.94515	3.00162	2.56771	2.50358	2.8007	0.868893	0.591184	2.59419	1.91239	4.20424	5.78144	0.0473179	0.150363	0.370837	0.152685	3.25558	2.62351
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00013679 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top