TCONS_00013672 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013672
Unique NameTCONS_00013672
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length302

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013672 ID=TCONS_00013672|Name=TCONS_00013672|organism=Clytia hemisphaerica|type=transcript|length=302bp
GCATAGATATCGTAACCCTGGGGAACAAGATGGCGATCCATTACCATTTG
GAGGTACCAACGATCTTTTGGCCACTTATGCCAATGAAGAAACTGAAGAA
GAGGAGGGAGGGACTCGTGTTTATGCCAAAAAGGATTCACAACTTTATGG
AGATAATAGACAAGAGAAATTTGTGTCTGCTCAATTTATGAAGAAATACA
TCCACGTTGCCAGAAATATTAAGCCGATGTTATCACAAAAAGCAGCAGAC
TTGATTTCAGAACGTTATGCAGATCTTCGAGACCAAGATCAACAAGGCTC
AG
Run BLAST on NCBI

transcript from alignment at sc0000171:305079..306059+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013672 ID=TCONS_00013672|Name=TCONS_00013672|organism=Clytia hemisphaerica|type=transcript|length=981bp|location=Sequence derived from alignment at sc0000171:305079..306059+ (Clytia hemisphaerica)
GCATAGATATCGTAACCCTGGGGAACAAGATGGCGATCGtaagatttatt
tttttaaactcgtctctaggaaaaaaaattcaaaataattctgaAGAGGA
TGagataactttttgaaaaacttttgatttatgatttatgtGTTATCATA
TCAAGGACTTGTGCTGTCTCTATGCCTAAAAATACTCAGTAATTGAAAGG
AAGGGTCTGAACCAATGAAAAAGTTCAAGGAAAGGAGTGGCACCTTCGTC
TATCTTAAGATATTTAGCAATTGGGAAAATGAATATTCAACTTGTGGATG
CAGACTTTCCTTTTATTCACTTCAATGCTCTTTGAACGTGtatttatttt
atcatttacCAGCATTACCATTTGGAGGTACCAACGATCTTTTGGCCACT
TATGCCAATGAAGAAACTGAAGAAGAGGAGGGAGGGACTCGTGTTTATGC
CAAAAAGGATTCACAACTTTATGGAGATAATAGACAAGAGAAATTTGTGT
CTGCTCAATTTATGAAGAAATACATCCACGTTGCCAGAAATATTAAGGTA
GGTGGTTCATTTActccattttctttcttttttatgtacACGctgttaag
gccggtctccactttcccgcgctgcgatcgcactttttggtttCAATCCt
tcttgcttggaaaaaagattacgtcataaaaatgtagcacgcactcgaaa
aaaaagttgaacatatttcaacttttttgaccAATAACGTGGAAGCTTTG
CGATCGAAGCACGCGCaaatggagaccggccttatGGACACTGATTATTT
TGTGTTTGTTTGATCCATTAAGAAACGTGTATCCATATTATCAGAAATCT
GAAGATTGTTTGAGCTCAGAACATGACGAGATGTTTAACTTATCTTTTCT
AGCCGATGTTATCACAAAAAGCAGCAGACTTGATTTCAGAACGTTATGCA
GATCTTCGAGACCAAGATCAACAAGGCTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007639XLOC_007639Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013672-exon-sc0000171-1491911889:305079..305116TCONS_00013672-exon-sc0000171-1491911889:305079..305116Clytia hemisphaericaexon
TCONS_00013672-exon-sc0000171-1510915933:305079..305116TCONS_00013672-exon-sc0000171-1510915933:305079..305116Clytia hemisphaericaexon
TCONS_00013672-exon-sc0000171-1575043694:305079..305116TCONS_00013672-exon-sc0000171-1575043694:305079..305116Clytia hemisphaericaexon
TCONS_00013672-exon-sc0000171-1491911889:305441..305625TCONS_00013672-exon-sc0000171-1491911889:305441..305625Clytia hemisphaericaexon
TCONS_00013672-exon-sc0000171-1510915933:305441..305625TCONS_00013672-exon-sc0000171-1510915933:305441..305625Clytia hemisphaericaexon
TCONS_00013672-exon-sc0000171-1575043694:305441..305625TCONS_00013672-exon-sc0000171-1575043694:305441..305625Clytia hemisphaericaexon
TCONS_00013672-exon-sc0000171-1491911889:305981..306059TCONS_00013672-exon-sc0000171-1491911889:305981..306059Clytia hemisphaericaexon
TCONS_00013672-exon-sc0000171-1510915933:305981..306059TCONS_00013672-exon-sc0000171-1510915933:305981..306059Clytia hemisphaericaexon
TCONS_00013672-exon-sc0000171-1575043694:305981..306059TCONS_00013672-exon-sc0000171-1575043694:305981..306059Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000171supercontigsc0000171:305079..306059 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
21.1608	14.97	19.5267	27.5485	24.7027	16.1823	23.2546	20.1495	7.20547	3.45751	0	1.44454	7.15835	5.04091	10.3015	3.75053	6.45429	2.35274	4.76043	3.74248	0	1.07092	8.381	7.68452	21.1401	44.5928	2.39105	3.64883	3.18063	2.22974
Blast
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BLAST of TCONS_00013672 vs. Swiss-Prot (Human)
Match: MCM3 (DNA replication licensing factor MCM3 OS=Homo sapiens GN=MCM3 PE=1 SV=3)

HSP 1 Score: 99.3673 bits (246), Expect = 6.599e-25
Identity = 52/101 (51.49%), Postives = 71/101 (70.30%), Query Frame = 2 
Query:    2 HRYRNPGEQDGDPLPFGGTNDLLATYANXXXXXXXXXXRVYAKKDSQLYGDNRQ-EKFVSAQFMKKYIHVARNIKPMLSQKAADLISERYADLRDQDQQGS 301
            HRYR PGEQDGD +P G   D+LAT     ++E++  T++Y K D+ L+G  ++ EK VSA FMKKYIHVA+ IKP+L+Q++A  I+E Y+ LR QD   S
Sbjct:  505 HRYRAPGEQDGDAMPLGSAVDILATDDPNFSQEDQQDTQIYEKHDNLLHGTKKKKEKMVSAAFMKKYIHVAKIIKPVLTQESATYIAEEYSRLRSQDSMSS 605
The following BLAST results are available for this feature:
BLAST of TCONS_00013672 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MCM36.599e-2551.49DNA replication licensing factor MCM3 OS=Homo sapi... [more]
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