TCONS_00013653 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013653
Unique NameTCONS_00013653
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length402

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013653 ID=TCONS_00013653|Name=TCONS_00013653|organism=Clytia hemisphaerica|type=transcript|length=402bp
AGACAAAGATCAGCATTTGTTTCTAAAACGTGACCCATATTCTTGTTTTG
TCAACAATTATTTTGCAGAAGGCCTCCTAGCATGGGAGGCCAACATTGAC
ATTCAGCCAGTGTTTAATGCATACAAGGCAGTTACATACATGTGtgccta
tttttcaaaaagtgaagataAGTGTTCAACTGCAATGCAAGAAGCGTTAA
AACAGGCCAAAAATTCAAATGACAGTCAGTTTGAGCAAATGTCTAAAATT
GCCAAAGTTTACAACACTAATAGAGAATGCTCAATCCAGGAAGCAGTTTA
CCTAACAATGCCCGAACTGTGGCTTAGAAAATGCTTTCCTGCTATTTCAT
TCGTTAACACTAACTTGCCTGATCAAAGGTACAGAAttttcaagtctaaa
aa
Run BLAST on NCBI

protein sequence of TCONS_00013653-protein

>TCONS_00013653-protein ID=TCONS_00013653-protein|Name=TCONS_00013653-protein|organism=Clytia hemisphaerica|type=polypeptide|length=133bp
DKDQHLFLKRDPYSCFVNNYFAEGLLAWEANIDIQPVFNAYKAVTYMCAY
FSKSEDKCSTAMQEALKQAKNSNDSQFEQMSKIAKVYNTNRECSIQEAVY
LTMPELWLRKCFPAISFVNTNLPDQRYRIFKSK
Run BLAST on NCBI

transcript from alignment at sc0000170:500559..500960

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013653 ID=TCONS_00013653|Name=TCONS_00013653|organism=Clytia hemisphaerica|type=transcript|length=402bp|location=Sequence derived from alignment at sc0000170:500559..500960 (Clytia hemisphaerica)
tttttagacttgaaaaTTCTGTACCTTTGATCAGGCAAGTTAGTGTTAAC
GAATGAAATAGCAGGAAAGCATTTTCTAAGCCACAGTTCGGGCATTGTTA
GGTAAACTGCTTCCTGGATTGAGCATTCTCTATTAGTGTTGTAAACTTTG
GCAATTTTAGACATTTGCTCAAACTGACTGTCATTTGAATTTTTGGCCTG
TTTTAACGCTTCTTGCATTGCAGTTGAACACTtatcttcactttttgaaa
aataggcaCACATGTATGTAACTGCCTTGTATGCATTAAACACTGGCTGA
ATGTCAATGTTGGCCTCCCATGCTAGGAGGCCTTCTGCAAAATAATTGTT
GACAAAACAAGAATATGGGTCACGTTTTAGAAACAAATGCTGATCTTTGT
CT

Coding sequence (CDS) from alignment at sc0000170:500559..500960

>TCONS_00013653 ID=TCONS_00013653|Name=TCONS_00013653|organism=Clytia hemisphaerica|type=CDS|length=399bp|location=Sequence derived from alignment at sc0000170:500559..500960 (Clytia hemisphaerica)
tttagacttgaaaaTTCTGTACCTTTGATCAGGCAAGTTAGTGTTAACGA
ATGAAATAGCAGGAAAGCATTTTCTAAGCCACAGTTCGGGCATTGTTAGG
TAAACTGCTTCCTGGATTGAGCATTCTCTATTAGTGTTGTAAACTTTGGC
AATTTTAGACATTTGCTCAAACTGACTGTCATTTGAATTTTTGGCCTGTT
TTAACGCTTCTTGCATTGCAGTTGAACACTtatcttcactttttgaaaaa
taggcaCACATGTATGTAACTGCCTTGTATGCATTAAACACTGGCTGAAT
GTCAATGTTGGCCTCCCATGCTAGGAGGCCTTCTGCAAAATAATTGTTGA
CAAAACAAGAATATGGGTCACGTTTTAGAAACAAATGCTGATCTTTGTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007628XLOC_007628Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013653-proteinTCONS_00013653-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013653-exon-sc0000170-1491911889:500559..500960TCONS_00013653-exon-sc0000170-1491911889:500559..500960Clytia hemisphaericaexon
TCONS_00013653-exon-sc0000170-1510915933:500559..500960TCONS_00013653-exon-sc0000170-1510915933:500559..500960Clytia hemisphaericaexon
TCONS_00013653-exon-sc0000170-1575043694:500559..500960TCONS_00013653-exon-sc0000170-1575043694:500559..500960Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000170supercontigsc0000170:500559..500960 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.4023	3.64052	1.43107	3.20218	0	0.39178	0.236333	0.663756	0.679529	0.49196	1.91587	1.5684	1.06243	0.77113	2.01516	1.57126	2.87545	1.40833	0.833176	0.833693	1.60241	2.8041	1.79782	0.397484	0	0	3.34018	2.99879	2.91253	1.70625
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00013653 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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