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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013633 ID=TCONS_00013633|Name=TCONS_00013633|organism=Clytia hemisphaerica|type=transcript|length=2672bp
GTATGTTTGAAACATTCGATTCAAAATGATTCTATTTTTTTCGCAATGCA
GTGtgttctattttcttttgtaggattttaaaattttgaagggggtagca
tcaaattttaaaagggggaagaacctagggtaggggggggtagctctagg
gtaggggggtagctctagggtaggggggggtagtgacccccttccgaact
atgGTTTTTTCAGAgtctgaaaataaaatataccAACAGATTTAGTGAAA
actagataaagaaaatggggttgtTTGTTAAGTTTTTTTGACCACCTGGT
GctgagaaatggcatttttaaggtggAAAATTGTTGTTTTGGGCGTTTTC
GATGGCATCTTTCCTTCAAATCggaggtaagaaaatttttcaaagctcAA
ATATTAAATATCTCGGTGTTTTGATTGACTCATATCTCAACTGGAAAGCC
CATATCACTTCATTATCAGCTAAACTTGCCAGAGCTAATGGTATCATATC
TAAGCTCAGGCACGTTTCAATAAAAACCTTAGTAACATCTACCATGCTCT
ATTTCATTCTCATCTTCAATACAGCTGTCAACTATGGGGTCTTACAGATA
ACACCACATCCAAGCCCATTTTTATTCGTCAAAAGAAAGCCCTACGTCTC
ATGACTTTCAACAACTTTCAATGCCCTTTTTCTCCACTTTTTTCTGATCT
TAAAATTCTCAAAGTCTTTGACCTAGTCAAATGCCTTAACATTTCTTTTG
TTCACCAATTTCTGAATAACAGGTTACCCCTTGACCatctaaattttttt
aaccttgtCCAGCTTGATGCTGATGGTGAAGATAACCAAGGCACCAGAGG
AGCAAGATTGAAGCTTTGTTCCATCCTACAATACCATTACCATAAATCCC
TTTCTAAAATCTGCATAACACAATGGAATAGTATTCAGCGATCTTATCCA
GATATTACTCTGAGCTCACCTGATTTTAGCCTTGTCAAATCTCTTGCCTT
TACTCACTGTCTTGGGGAATACTGAGCACACCCCTCTACACACAGCGTAC
TTTTCCTTTTTATCTTTATCTTTATCTATCTTTATCtaaacaaaatttat
aaaattaacATACTTAATAAATTAACATACttaacttttacaaaatttta
caaatgttaTTGGCacttaggtggccgcatctttATGATTAGTCTAGGCT
ATAGGCCGTCTCCTTCCTTTCTATTTTGTGGATACCGTCTCGTGTATTAT
TAGTGTTCAAATGGCAGGCTGCATCATTTAAGGCGCGCGACACACCTCCG
CACACATCTAAAATCCCTAAGGAGTGCGATCAATCACACCCCATAAATTT
AGATTCCACTACTAAAAGTTGAACATAGCACTCACACAtctaaataacaa
aaattaaggttttaggagtgtgattgaccacacgccaagagttttcaaat
gataaagcctgaaatggtaaataaatagttacttacttacttacttacat
cagcattttcctagagggggattttcagaaaaaatcattctcttggctgg
atagccctgaattagtagtaacTAAAAATGGTATAGTTTGTCAGCTTTCA
ATGTTTATAcctcgagatattttggtttaaatataaaaaaattattgata
ttttttgctgagtcagtttttcagcatatttacccaccttgaaaatgaaa
tatctgAAGATCGAAACATCGAAaattaacaaaccataccattttccgtg
aagtaatttgttattcaataggctgTCGCGTTgtccaaaacaactattgg
gCGAGATAAACTCGATTTCAGATTATTTCGACGCGCTGCTACaggaaaca
tatttgataaaatcgaaggTATTAAATATGATTGAAGGTAATCGATAATA
Ttcgaaatgattgaacaaatcgaaaactagttgaagaaaatgccataatc
tgGAGTTGGGTGAGTATTCTATCACCGATAAAATTAATAGGTGCCATAAG
TTggtttaatatcgacatccctcatctaattgcgacacccttctttaaag
aGAGGAATAatatatgaaagcttgaatcactgattgaaaaaggattattc
ctctatGACCACTAAGCCAAGAAAAagagtttcaacctttctataaattt
cagctgataaaaatggtgtcaaaattagaggagggatgtcaacattagac
caagttacggtggTCACTGACCACCTTCGATTATTATTGATCATTATCTA
TTACTTCGATCACAATCGCACGTTCAATTGGTACCGTAAGTTGGTCTAAT
CTCGACATACGTCTTCTAATTTCGACACCCTTCTTTAGAGATAGGAATAA
TATGAAAGTTGGAATCGGTGATTGAAAAAGAATTTTTCCTCtcttaccac
taagcaaagaaaaatagtttcagcctttctattattttcagctctagaaa
agggtgtcgaatttagatgagggatgttgacattagaccaagttacggta
ccgTCTGGTtaatactgtaagttggtctaatgttgacatctgtcttctaa
ttttgacacccttccttagagataggaataataggaaggttgggatcact
gatagacaaaagatttctTCCTCTCTTAACGTTAAAAGCAattggaatta
attttcgcgggttttaatttta Run BLAST on NCBI transcript from alignment at sc0000170:196683..199354 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00013633 ID=TCONS_00013633|Name=TCONS_00013633|organism=Clytia hemisphaerica|type=transcript|length=2672bp|location=Sequence derived from alignment at sc0000170:196683..199354 (Clytia hemisphaerica)
taaaattaaaacccgcgaaaattaattccaatTGCTTTTAACGTTAAGAG
AGGAagaaatcttttgtctatcagtgatcccaaccttcctattattccta
tctctaaggaagggtgtcaaaattagaagacagatgtcaacattagacca
acttacagtattaACCAGAcggtaccgtaacttggtctaatgtcaacatc
cctcatctaaattcgacacccttttctagagctgaaaataatagaaaggc
tgaaactatttttctttgcttagtggtaagaGAGGAAAAATTCTTTTTCA
ATCACCGATTCCAACTTTCATATTATTCCTATCTCTAAAGAAGGGTGTCG
AAATTAGAAGACGTATGTCGAGATTAGACCAACTTACGGTACCAATTGAA
CGTGCGATTGTGATCGAAGTAATAGATAATGATCAATAATAATCGAAGGT
GGTCAGTGAccaccgtaacttggtctaatgttgacatccctcctctaatt
ttgacaccatttttatcagctgaaatttatagaaaggttgaaactctTTT
TCTTGGCTTAGTGGTCatagaggaataatcctttttcaatcagtgattca
agctttcatatatTATTCCTCtctttaaagaagggtgtcgcaattagatg
agggatgtcgatattaaaccAACTTATGGCACCTATTAATTTTATCGGTG
ATAGAATACTCACCCAACTCcagattatggcattttcttcaactagtttt
cgatttgttcaatcatttcgaATATTATCGATTACCTTCAATCATATTTA
ATAccttcgattttatcaaatatgtttcctGTAGCAGCGCGTCGAAATAA
TCTGAAATCGAGTTTATCTCGcccaatagttgttttggacAACGCGAcag
cctattgaataacaaattacttcacggaaaatggtatggtttgttaattT
TCGATGTTTCGATCTTcagatatttcattttcaaggtgggtaaatatgct
gaaaaactgactcagcaaaaaatatcaataatttttttatatttaaacca
aaatatctcgaggTATAAACATTGAAAGCTGACAAACTATACCATTTTTA
gttactactaattcagggctatccagccaagagaatgattttttctgaaa
atccccctctaggaaaatgctgatgtaagtaagtaagtaagtaactattt
atttaccatttcaggctttatcatttgaaaactcttggcgtgtggtcaat
cacactcctaaaaccttaatttttgttatttagaTGTGTGAGTGCTATGT
TCAACTTTTAGTAGTGGAATCTAAATTTATGGGGTGTGATTGATCGCACT
CCTTAGGGATTTTAGATGTGTGCGGAGGTGTGTCGCGCGCCTTAAATGAT
GCAGCCTGCCATTTGAACACTAATAATACACGAGACGGTATCCACAAAAT
AGAAAGGAAGGAGACGGCCTATAGCCTAGACTAATCATaaagatgcggcc
acctaagtGCCAAtaacatttgtaaaattttgtaaaagttaaGTATGTTA
ATTTATTAAGTATgttaattttataaattttgtttaGATAAAGATAGATA
AAGATAAAGATAAAAAGGAAAAGTACGCTGTGTGTAGAGGGGTGTGCTCA
GTATTCCCCAAGACAGTGAGTAAAGGCAAGAGATTTGACAAGGCTAAAAT
CAGGTGAGCTCAGAGTAATATCTGGATAAGATCGCTGAATACTATTCCAT
TGTGTTATGCAGATTTTAGAAAGGGATTTATGGTAATGGTATTGTAGGAT
GGAACAAAGCTTCAATCTTGCTCCTCTGGTGCCTTGGTTATCTTCACCAT
CAGCATCAAGCTGGacaaggttaaaaaaatttagatGGTCAAGGGGTAAC
CTGTTATTCAGAAATTGGTGAACAAAAGAAATGTTAAGGCATTTGACTAG
GTCAAAGACTTTGAGAATTTTAAGATCAGAAAAAAGTGGAGAAAAAGGGC
ATTGAAAGTTGTTGAAAGTCATGAGACGTAGGGCTTTCTTTTGACGAATA
AAAATGGGCTTGGATGTGGTGTTATCTGTAAGACCCCATAGTTGACAGCT
GTATTGAAGATGAGAATGAAATAGAGCATGGTAGATGTTACTAAGGTTTT
TATTGAAACGTGCCTGAGCTTAGATATGATACCATTAGCTCTGGCAAGTT
TAGCTGATAATGAAGTGATATGGGCTTTCCAGTTGAGATATGAGTCAATC
AAAACACCGAGATATTTAATATTTgagctttgaaaaattttcttacctcc
GATTTGAAGGAAAGATGCCATCGAAAACGCCCAAAACAACAATTTTccac
cttaaaaatgccatttctcagCACCAGGTGGTCAAAAAAACTTAACAAac
aaccccattttctttatctagtTTTCACTAAATCTGTTggtatattttat
tttcagacTCTGAAAAAACcatagttcggaagggggtcactacccccccc
taccctagagctacccccctaccctagagctacccccccctaccctaggt
tcttcccccttttaaaatttgatgctacccccttcaaaattttaaaatcc
tacaaaagaaaatagaacaCACTGCATTGCGAAAAAAATAGAATCATTTT
GAATCGAATGTTTCAAACATAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00013633-exon-sc0000170-1491911889:196683..199354 | TCONS_00013633-exon-sc0000170-1491911889:196683..199354 | Clytia hemisphaerica | exon |
| TCONS_00013633-exon-sc0000170-1510915933:196683..199354 | TCONS_00013633-exon-sc0000170-1510915933:196683..199354 | Clytia hemisphaerica | exon |
| TCONS_00013633-exon-sc0000170-1575043694:196683..199354 | TCONS_00013633-exon-sc0000170-1575043694:196683..199354 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000170 | supercontig | sc0000170:196683..199354 . |
Blast
The following BLAST results are available for this feature:
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