TCONS_00013630 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013630
Unique NameTCONS_00013630
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length316

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013630 ID=TCONS_00013630|Name=TCONS_00013630|organism=Clytia hemisphaerica|type=transcript|length=316bp
ctgctctattcacatactgaatttgaaaaatcttctatgtggcgtttttt
tgtaaacttcaaaaactgatttttgtcccgtcTTTgcgggtacaaagtcc
aaatatgcgtttcccgtaatttttgtaagAAGAGTTAGGTCCATACTGTC
TGTAACTTCTGTCAATGTGTATGTGTATTGTCCTATGTAAGCATTGTAGC
ATTGTATTGTTGGAATAAGTAGGAAAAAGAAAATACCTAAGTCTAGTCTA
GTCTAATTACCAGCTGTCAGGGGGTGTTCAAAGAATATGAGAGTTTATTT
GTACAAAACAAACACA
Run BLAST on NCBI

transcript from alignment at sc0000170:114581..114896

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013630 ID=TCONS_00013630|Name=TCONS_00013630|organism=Clytia hemisphaerica|type=transcript|length=316bp|location=Sequence derived from alignment at sc0000170:114581..114896 (Clytia hemisphaerica)
TGTGTTTGTTTTGTACAAATAAACTCTCATATTCTTTGAACACCCCCTGA
CAGCTGGTAATTAGACTAGACTAGACTTAGGTATTTTCTTTTTCCTACTT
ATTCCAACAATACAATGCTACAATGCTTACATAGGACAATACACATACAC
ATTGACAGAAGTTACAGACAGTATGGACCTAACTCTTcttacaaaaatta
cgggaaacgcatatttggactttgtacccgcAAAgacgggacaaaaatca
gtttttgaagtttacaaaaaaacgccacatagaagatttttcaaattcag
tatgtgaatagagcag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007605XLOC_007605Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013630-exon-sc0000170-1491911889:114581..114896TCONS_00013630-exon-sc0000170-1491911889:114581..114896Clytia hemisphaericaexon
TCONS_00013630-exon-sc0000170-1510915933:114581..114896TCONS_00013630-exon-sc0000170-1510915933:114581..114896Clytia hemisphaericaexon
TCONS_00013630-exon-sc0000170-1575043694:114581..114896TCONS_00013630-exon-sc0000170-1575043694:114581..114896Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000170supercontigsc0000170:114581..114896 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.349146	0.969793	1.79678	2.53551	0.465213	0	0	0	0.838045	0.346018	1.00756	0.471028	0.22047	0.249203	0.62254	0.808026	0.248856	0	0	1.25652	0.718593	0.469005	0.760182	0.691116	0.355917	0.971249	0.483434	0	0.735878	0.374871
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00013630 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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