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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013615 ID=TCONS_00013615|Name=TCONS_00013615|organism=Clytia hemisphaerica|type=transcript|length=976bp
ATGGTATAAATAGTGGTTTTAAAATCAGTAATAAACATCGACTTCTGATA
CAAACAGTACCGGTTTTGAAGAAGCGAATCAAAGTCACCAACAATTCTTT
TGAGTTCGTAATGGATATGGCAAATATGAACGTAGGAGCAATGCTTTTCA
ACAAAGAACTTCCTTTTGTTTGTGAATTAGATGGTGAAAttaatggccat
aaattctcaGTTAGAGGCAAAGGGATTGGAAACTCAGCTCAAGGATTGAC
GCACGGTATTCATGTTTGTACGTCCGGCGAACTTCCCGTATCATGGACCG
CTATCACGCATAACCTTCAATATGGATTATTATGTTTTTCCCAATACCCT
CATGACATCAATGATTACATCAAAAGTACCTTCCCTGAAGGCTATACCAA
AGAACGTACCTCTAATTTCGATGGGGACGGCAAATATACATCACGTCACG
TCATTACATACGAAAACGGCTGTATTTACAATCGCGTAACGATCAACGGA
TCTGGATTCAGCGATGATGGAAATGTTCTTGGTAAAAATCTAGCTGATTA
TGAAAAACCAGTCTGTTCCATGTACTTCCCTGGAAAAGATGGCTTGAGAG
CCGAAATTTGTaagTTAACAGAAACTAAAGACGGGGGTTACCAATCCTGT
CGATTGGAAGATCAAGTAATCAGACCTATTTCACAAGGTCCCACAGTTCC
GATGACTCATCACTATAACTACAGCTCCGTAGAATATAGCAAAGATGCCA
ATGAAACAAGAGACCATATTGTCATGAAAGAAATCACCAAAGTCAGCCAC
TTCATTCAATAACTGACATATTATTAGATTGAGGAGATTTGGAGCAAGGT
TATCATTAAaatcaatgcaatttttaaaactAATGTAATTTTTGTgtagt
tttgtaattttcttgcacacttttttgtaatctttgcggcagttttgtat
ttttctgcgcacttttgttatttttg Run BLAST on NCBI transcript from alignment at sc0000170:389315..392861- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00013615 ID=TCONS_00013615|Name=TCONS_00013615|organism=Clytia hemisphaerica|type=transcript|length=3547bp|location=Sequence derived from alignment at sc0000170:389315..392861- (Clytia hemisphaerica)
ATGGTATAAATAGTGGTTTTAAAATCAGTAATAAACATCGACTTCTGATA
CAAACAGTACCGGTTTTGAAGAAGCGAATCAAAGTCACCAACAATTCTTT
TGAGGTAAGTACCAAACAATTATATGTACAGTAGAGTCCTGTTAACTCGA
TTCTCTATAACTCGAATGTCTCCTTAACTCGAATAGACTCCCCCTTCTCA
TAGACCCGGTGGGATTTTATCAGCCAGTGGGGGCAAAAATAACGGACCTC
GATGGGGATTGATATATATTCCCATGTTTTTTATTGCTGGGGATTTGAAT
TACATTGTTTTCTAGCCAGAAAATTCAGTGGGGATGTGCTTATGTGATTG
TTTTCAACAGGGACAAAAATCAGAGTATAATTTTCCACAGGGAACGATAT
TTTGGCCAATTTTTCAAGTGAAAAAGGTTCTTTGAGGAGGGGGTGTGAAT
AGCTTCTAGGATCCCTTCACTTAACAATGCCAAGGCTTACTCCATAGCTC
GAAGTTTCTTCAACTTGGATAAATTTGTGTTCCCCGTGCGTGTACTTCAC
AGTAATATAAGTATTCCTCTGATTTTTCTCTTTTTTCAACTATGGAGATT
CCTATCCAGCCTTCCCACATTCATTTTTCTAATTTTAATCTGTATAAACA
CAATCATGGTCGAAATAGATTGAGATTTTAGTGTATTTTAACGTCTTTGA
GAATCTAAAGTTCGGGCGAGGATTGCTATTTTAGCACTTCAACTTTCTTT
CATTGAATATTTCGATTTTGGAGGGTTCGGTGGCTTCTTGGCTATATTAA
AAGCCTTATTGGAGCAAATTTGAGCTTTTAAATCCTGAGATCCTAAGGTC
CTCCTAAGTCTCATGTCAGACTTAAAACTCTACTTTCCAATTGTAGTTTA
ACACGCTTAAAAATCATTTGTGGTGTTTGAAATTTCGCAGGGAAATCCCC
TTTAACTCAAATATTTTGTCTATGATTGCATTAACCCTTTCTTGAACCCA
ACTTTGTACCCAGAGCCACTTGCATCACTTTTTGATTTTACCTAAGGACG
TTGGTACATTTGCTAGTGATGCTACGAAAATCATAGAAAGCGTACTAAGA
GAATGTGACCGAAATTTATTTGAATAATTGGAAAAATGTATGAGTTGACC
CGGGCGAAGACACATTTATGAATCTGCGTCTTTCTGCAACTGATACGGCT
AGCTTCTGATTTGTCTACCTAGATCGTGATTGGCTGGGGACGATGGTTAA
TCAGCACTTTACCGTCCTCGATTTTTCGGGTCAAATTCCTTTAAGTCACT
CTGCAATCCTCAAGAGTGCAAATACATGAACTCTCTATAGACTGATTCCG
TGTGACGTCATTTTCACCCACGATCAACCATTTTTTATTAGGAATGGTAG
AAAGAATATGTACAGGATGGTTTAGTAAAAATTTGATTACTCAAAGTCTT
CAAATATTTCCCGTTTGGACCTGCACATAGTTTTTTTGTTTCGTGGGTGA
AATTTATTTCAGTTAGAAACAGGCAGCTTGCTTGAGGTTTTGCTTGAAGA
TAGTCCCTAACTGGATTTAGCCGAATCGGTCTATTCACCAAAAATCGGCT
TTAAAATGTGAGTCAAGAAGCACTCTAAAATGCGAGTCAAGAAGGACTCT
AAAATAAGAGTCAAAATATCAACTTGTTTATCTCTTTCATTTCTAGTTCG
TAATGGATATGGCAAATATGAACGTAGGAGCAATGCTTTTCAACAAAGAA
CTTCCTTTTGTTTGTGAATTAGATGGTGAAATTAATGGCCATAAATTCTC
AGTTAGAGGCAAAGGGATTGGAAACTCAGCTCAAGGATTGACGCACGGTA
TTCATGTTTGTACGTCCGGCGAACTTCCCGTATCATGGACCGCTATCACG
CATAACCTTCAATATGGATTATTGTGAGTAAATTCTTCCAACTTCGTTCC
CGTGTACCCAGACTTCTTCGACGTTACTAATGGGCCGGTGACAGAGAACA
TTATCTGGGTGCTATCAATAACCATCAAGACGCCAATAATACACCAGGAA
CGAGGCTTTATTAATATTCCTTTGAATTTCTTAATAGTTTTCCGCCTAAA
AAGTAGTCTGAATCGCAGACCTCTACAAAACCCCAGGTAGTATAGTCTAT
AAGGAGCACGAATCCGTTAGTAGATGCCAGCAGCCTACCTAAAAAGATGA
AAAATAATTCCCTAAGATCACAGATACAACAGATAGACCAAATATTACCA
ATGAGAAAATCTAAGACCTTATAGAAACTATATTGATGGATACGCCGCCT
CGTTGCTAGCAAGCACCTTACCAATAACAATGGTACCAAACCCATTGTCT
AACTCTCAAGTTATAAGCTTTTATGCCAGTTTGAAGTTTTGGATTTCAAA
AAAAAGTCGAAAACGTTCTCACATTTTTTAATGTTGCACGCTGGAAAGGT
TAATTCTCTTTTAGATGTTTTTCCCAATACCCTCATGACATCAATGATTA
CATCAAAAGTACCTTCCCTGAAGGCTATACCAAAGAACGTACCTCTAATT
TCGATGGGGACGGCAAATATACATCACGTCACGTCATTACATACGAAAAC
GGCTGTATTTACAATCGCGTAACGATCAACGGATCTGGATTCAGCGATGA
TGGAAATGTTCTTGGTAAAAATCTAGCTGATTATGAAAAACCAGTCTGTT
CCATGTACTTCCCTGGAAAAGATGGCTTGAGAGCCGAAATTTGTAAGGTA
AAATATTTTTACGGCTGGCTCCATTAAGGGATATTATGTATTAAAGGATG
TCATTAAACGTTCCCTCGCTGCATATGATGATGAGCACGCCAAAAAATAA
TATCTTTAACAAAGATTTCGAATCCTTTTCTCTTACGATTTAATGTAATT
TCCAAGAGAGAAAGAGTCGAGTAAATTAACTCTGACTGGCTAAATCAACA
GTTAGACCAAACAGAATATAAATTTTGATAAAATTCAGAAAAGATTGTAG
TTTGTGCGCGTTGAAAAGATAATTCTTGAGTGGAATCTAATCAAATAGAA
ATTTTTTCTCATGAAGATAAAATTGATAAAGCAACATTTTGCTTCACCGG
GTTTTAATCCCCTCTTTTGGTGGAGAACCATCACTAGACAATGAAATTCA
TTATAATAATTTATATATTTTTGAATTATTTACAGTTAACAGAAACTAAA
GACGGGGGTTACCAATCCTGTCGATTGGAAGATCAAGTAATCAGACCTAT
TTCACAAGGTCCCACAGTTCCGATGACTCATCACTATAACTACAGCTCCG
TAGAATATAGCAAAGATGCCAATGAAACAAGAGACCATATTGTCATGAAA
GAAATCACCAAAGTCAGCCACTTCATTCAATAACTGACATATTATTAGAT
TGAGGAGATTTGGAGCAAGGTTATCATTAAAATCAATGCAATTTTTAAAA
CTAATGTAATTTTTGTGTAGTTTTGTAATTTTCTTGCACACTTTTTTGTA
ATCTTTGCGGCAGTTTTGTATTTTTCTGCGCACTTTTGTTATTTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00013615-exon-sc0000170-1575043694:392758..392861 | TCONS_00013615-exon-sc0000170-1575043694:392758..392861 | Clytia hemisphaerica | exon |
| TCONS_00013615-exon-sc0000170-1575043694:390939..391165 | TCONS_00013615-exon-sc0000170-1575043694:390939..391165 | Clytia hemisphaerica | exon |
| TCONS_00013615-exon-sc0000170-1575043694:390115..390397 | TCONS_00013615-exon-sc0000170-1575043694:390115..390397 | Clytia hemisphaerica | exon |
| TCONS_00013615-exon-sc0000170-1575043694:389315..389676 | TCONS_00013615-exon-sc0000170-1575043694:389315..389676 | Clytia hemisphaerica | exon |
| TCONS_00013615-exon-sc0000170-1510915933:392758..392861 | TCONS_00013615-exon-sc0000170-1510915933:392758..392861 | Clytia hemisphaerica | exon |
| TCONS_00013615-exon-sc0000170-1510915933:390939..391165 | TCONS_00013615-exon-sc0000170-1510915933:390939..391165 | Clytia hemisphaerica | exon |
| TCONS_00013615-exon-sc0000170-1510915933:390115..390397 | TCONS_00013615-exon-sc0000170-1510915933:390115..390397 | Clytia hemisphaerica | exon |
| TCONS_00013615-exon-sc0000170-1510915933:389315..389676 | TCONS_00013615-exon-sc0000170-1510915933:389315..389676 | Clytia hemisphaerica | exon |
| TCONS_00013615-exon-sc0000170-1491911889:392758..392861 | TCONS_00013615-exon-sc0000170-1491911889:392758..392861 | Clytia hemisphaerica | exon |
| TCONS_00013615-exon-sc0000170-1491911889:390939..391165 | TCONS_00013615-exon-sc0000170-1491911889:390939..391165 | Clytia hemisphaerica | exon |
| TCONS_00013615-exon-sc0000170-1491911889:390115..390397 | TCONS_00013615-exon-sc0000170-1491911889:390115..390397 | Clytia hemisphaerica | exon |
| TCONS_00013615-exon-sc0000170-1491911889:389315..389676 | TCONS_00013615-exon-sc0000170-1491911889:389315..389676 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000170 | supercontig | sc0000170:389315..392861 - |
Blast
The following BLAST results are available for this feature:
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