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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013611 ID=TCONS_00013611|Name=TCONS_00013611|organism=Clytia hemisphaerica|type=transcript|length=1082bp
CAGAAACTTGTTCGACTTTCGTTGGTTTAGAAACTTGTTCGACTTTCGTT
GGTTCAGAAACTTGTTCGACCTCCGTTGGTTCAGAAACTTGATCGACTTC
CGTTTGTTCGAAAACTTGTTCGACTTTCGAtggtttgaaaactttttcgt
CTTTCGATGGTTCAGAAACTTTTTCGACTTCCGTTGGTTTGGAAACTTGT
TCGACTTTCGTTGGTTCGGAAACTTGTTCAACTTCTGAGGGTTCGGAAAC
TTGTTCAACTTTCGTTGGTTCAGAAGCTTGTTCGACTTTCGTCGATTCAG
AAGCTTGTTCGACTTTCGTTGGTTCGGAAACTTTTTTCACTTTCGATGGT
TCAGAGACTTCTTTGACTTTTGACGGTTCGGAAACGTGTTCAACTTCTGT
TGGTTCGGAAACTTTTTCGACTTCCGTTGGTTTAGAAAGTTTTCCGACTT
CTGTCGATTTGGAAACTTCTGTTGGTTTGGAAACCTGTTCAACTTCTGAG
GGTTTGGAAACTTGATTGATTTTCGTTGGTTCAGAAACATGTTCGACTTC
TGTTGGTGCGGAAACTTGTTTGACTTCCGTTGGTTCGGAAACTTGTTCAA
CTTTCGTTGGCTCAGAAGCTTGTTCGACTTTCGTTGATTCAGAAACTTGT
TCAACTTCTGAGGGTTCGGAAACTTGTTCAACTTTCGTTGGCTCAGAAGC
TTGTTCGACTTTCGTTGATTCAGAAACTTGTTCAACTTCTGAGGGTTCGG
AAACTTGTTCCTTTATCGTTGGTTCACAAACTTGTTCAACTTCTGTTGGT
TTGGAAACATGTTCAACTTCTGTTGGTTCGGAAACTTGTTTGACTTCCGT
TGGTTTCCAAACTTGTTCAACTTTCGTTGGTTCAAAAACTTGTTCGACTT
TCGTTGGTTCAAAAACTTGTTCGACTTTCGTTGGTTCGGAAACGTGTTCG
ACTTCCGTTGGTTCGGAAACTTGTTCAACTTCTGAGGGTTCGGAAACTTG
TTCAACTTTCGTTGATTCAGAATCTTGTTCGACTTTCGTTGGTTCAGAAA
CTTGTTCAACTTCTGAGGGTTCGGAAACTTGT Run BLAST on NCBI transcript from alignment at sc0000170:318266..321042- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00013611 ID=TCONS_00013611|Name=TCONS_00013611|organism=Clytia hemisphaerica|type=transcript|length=2777bp|location=Sequence derived from alignment at sc0000170:318266..321042- (Clytia hemisphaerica)
CAGAAACTTGTTCGACTTTCGTTGGTTTAGAAACTTGTTCGACTTTCGTT
GGTTCAGAAACTTGTTCGACCTCCGTTGGTTCAGAAACTTGATCGACTTC
CGTTTGTTCGAAAACTTGTTCGACTTTCGATGGTTTGAAAACTTTTTCGT
CTTTCGATGGTTCAGAAACTTTTTCGACTTCCGTTGGTTTGGAAACATGT
TCATCTTCCGTTGGTTCAGAAACCTGTTCGACTTGTAATGGTTCGGAAAC
TTGTTCAACTTTCGTTGGTTCAGAAACATGTTCAACTTCCGTTGGTTCGA
AAACTTGTTCGACTTTTGTTGGTACAGAAACGTGTTCAACTTTCGTTGGT
TCAGAAACTTGTTCGACTTTCGATGGTTTAGAAACTTGTTCAACTTGTGA
CGGTTCGGAAACGTGTTCCTCTATCGTTGGTTCGGAAACTTGTTCAACTT
CTGTTGGTTCAGAAACTTGTTCGACTTTTGTTGGTTCGGAAATTTGTTCG
ACTTTTGCTGGTTCAGAAACTTGTTCCACTTTCGTAGGTTCAGAAACGTG
TTTCACTTTCGTTGGTTCAAAAACTTGTTCAACTTCTGTTGGTTCAGAAA
CCTGCTCGACTTCCGTTGGTTCGGAAACTTGTTCGACTTTCGATGGTTTG
AAAACTTTTTCGTCTTTCGATGGTTCAGAAACTTTTTCGACTTCCGTTGG
TTTGGAAGCATGTTCCACTTTCGTTGGTTCAGAAACTTGTTCAACTTCTG
AGGGTTCGGAAACTTGTTCCACTTTCGTCGGTTCGGAAACTTGTTCGACT
TTCGTTGGTTCAAAAACTTGTTCAGCTTCTGTTGGTTCAGAAACCTGCTC
GACTTTTGTTGGTTCAGAAACTTGTTCCACTTTCGTTGGTTCAGAAACTT
GTTCAACTTTCGTTGGTTCGGAAACTTGGTCAACTTTCGTTGGTTCAGAA
ACTTGTTCCACTTTCGTTGGTTCGGAAGCTTGTTCCACTTTTGTTGGTTC
AAAAACTTGTTCCACTTTCGTTGGTTCAGAAACTTGTTCCACTTTCGTTG
GTTCGGAAGCTTGATCCACTTTCGTTGGTTCAGAAGCTTGTTCCACTTTC
GTTGGTTCAGAAACTTGTTCCACTTTCGTTGGTTCGGAAGCTTGATCCAC
TTTTGTTGGTTCAGAAGCTTGTTCAACTTCCGTTGGTTCAGAAACTTGTT
CAACTTCCGTTGGTTCAGAAACTTGTTCAACTTTCGTTGGTTCGGAAACT
TGGTCAACTTTCGTTGGTTCAGAAACTTGTTCCACTTTCGTTGGTTCGGA
AGCTTGATCCACTTTCGTTGGTTCAGAAACTTGTTCCACTTTCGTTGGTT
CAGAAACTTGTTCCACTTTCGTTGGTTCGGAAGCTTGATCCACTTTTGTT
GGTTCAGAAGCTTGTTCAACTTTCGTTGGTTCAGAAACTTGTTCCACTTT
CGTTGGTTCAGAAACTTGTTCCACTTTCGTTGGTTCGGAAGCTTGATCCA
CTTTTGTTGGTTCAGAAGCTTGTTCAACTTTCGTTGGTTCAGAAACTTGT
TCCACTTTCGTTGGTTCAAAAACTTGTTCAACTTCTGTTGGTTCAGAAAC
CTGCTCGACTTTGGTTGGTTCGGAAACCTGCTCGACTTTTGTTGGTTCAG
AAACTTGTTCCACTTTCGTTGGTTCGGAAACTTGTTCCACTTTCGTTGGT
TCAGTAACTTGTTCCACTTTCGTTGGTTCAGAAACTTGATCGACTTTCGT
TGGTTCAAAAAATTCTTCGACTTCTGTTGGTTCGTGTTCGAGTTTCGTTG
GTTTAGAAACTTGTTTGACTTCTGTTGGTTCGGAAACTTGTTCGACTTTC
GTTGGTTCGGAAACTTGATCCACTTTCGTTGGTTCTGAAACTTGTTCGAC
TTTCGTTGGTTCGGAAACTTGTTCAACTTCTGAGGGTTCGGAAACTTGTT
CAACTTTCGTTGGTTCAGAAGCTTGTTCGACTTTCGTCGATTCAGAAGCT
TGTTCGACTTTCGTTGGTTCGGAAACTTTTTTCACTTTCGATGGTTCAGA
GACTTCTTTGACTTTTGACGGTTCGGAAACGTGTTCAACTTCTGTTGGTT
CGGAAACTTTTTCGACTTCCGTTGGTTTAGAAAGTTTTCCGACTTCTGTC
GATTTGGAAACTTCTGTTGGTTTGGAAACCTGTTCAACTTCTGAGGGTTT
GGAAACTTGATTGATTTTCGTTGGTTCAGAAACATGTTCGACTTCTGTTG
GTGCGGAAACTTGTTTGACTTCCGTTGGTTCGGAAACTTGTTCAACTTTC
GTTGGCTCAGAAGCTTGTTCGACTTTCGTTGATTCAGAAACTTGTTCAAC
TTCTGAGGGTTCGGAAACTTGTTCAACTTTCGTTGGCTCAGAAGCTTGTT
CGACTTTCGTTGATTCAGAAACTTGTTCAACTTCTGAGGGTTCGGAAACT
TGTTCCTTTATCGTTGGTTCACAAACTTGTTCAACTTCTGTTGGTTTGGA
AACATGTTCAACTTCTGTTGGTTCGGAAACTTGTTTGACTTCCGTTGGTT
TCCAAACTTGTTCAACTTTCGTTGGTTCAAAAACTTGTTCGACTTTCGTT
GGTTCAAAAACTTGTTCGACTTTCGTTGGTTCGGAAACGTGTTCGACTTC
CGTTGGTTCGGAAACTTGTTCAACTTCTGAGGGTTCGGAAACTTGTTCAA
CTTTCGTTGATTCAGAATCTTGTTCGACTTTCGTTGGTTCAGAAACTTGT
TCAACTTCTGAGGGTTCGGAAACTTGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00013611-exon-sc0000170-1575043694:320847..321042 | TCONS_00013611-exon-sc0000170-1575043694:320847..321042 | Clytia hemisphaerica | exon |
| TCONS_00013611-exon-sc0000170-1575043694:318266..319151 | TCONS_00013611-exon-sc0000170-1575043694:318266..319151 | Clytia hemisphaerica | exon |
| TCONS_00013611-exon-sc0000170-1510915933:320847..321042 | TCONS_00013611-exon-sc0000170-1510915933:320847..321042 | Clytia hemisphaerica | exon |
| TCONS_00013611-exon-sc0000170-1510915933:318266..319151 | TCONS_00013611-exon-sc0000170-1510915933:318266..319151 | Clytia hemisphaerica | exon |
| TCONS_00013611-exon-sc0000170-1491911889:320847..321042 | TCONS_00013611-exon-sc0000170-1491911889:320847..321042 | Clytia hemisphaerica | exon |
| TCONS_00013611-exon-sc0000170-1491911889:318266..319151 | TCONS_00013611-exon-sc0000170-1491911889:318266..319151 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000170 | supercontig | sc0000170:318266..321042 - |
Blast
The following BLAST results are available for this feature:
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