TCONS_00013587 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013587
Unique NameTCONS_00013587
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1084

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013587 ID=TCONS_00013587|Name=TCONS_00013587|organism=Clytia hemisphaerica|type=transcript|length=1084bp
tttttaaactaaattttgacaATGCATGTTGGAAAGCTAAATAGGCACAC
GTGACTTTGCAATAAAAAGGGCTTCGATTTCCTTTTAAATTCACTTGGTT
TGTCAGTAGCAAGCTTGCcgcatcaaaaaattgaaaaaagctcTCCATCG
AGTTATTCGACAGGAAATCAATACAAGGATGATGAAAACGACAGCGTTGA
TTACTATTATCTGTAATTTGATATCAATTACCAATGCAACTTTGTACACT
GATTACGAAACCAAAAACGGAAAAAAGTATAAACTCGGTTATGGGTGTCA
TAATAATTACTGCTGGTCATACTGTGGAAGTAATTGGgagGGTGGCGAGT
GGTGTTACACCAGGGCTAAAAGAAACGATCCTTATCTCGACATATACGGT
CGCTACTATGAATCGTGCTTCACAGACAGTGATTGTTCAGACAAATTGGA
CGAATGTTACGGTAATTGTACTTTGTGAAGCAAAacagaattaatttttt
tttttgacttttctatatttcactGTAGTCAAATTTATGTTTAAAATACC
TTAGAAATATAAATATACCATATATCAGGTTTAGGCATATAATTAACTTA
TTCTGAATCGCAGAcatctatagatatacttcctaaaTAAGAAACTCtgt
tcgctagaggatgagcaaaagccaactttggctcggacatacccgtcatc
tcgcaaacctagcACCCCGTACCAGAATTTAAGATAACGACTAAATGGAT
ATAgaattttatctgtttttgcATAACCGTGAATAGCATGGCCAAAATTG
TAGCTTTAACTCTTTTCtgctactcttgtctcccgaatagacgtctcCCC
GCTAATtgttgagagaaaaaaatccatcccctcGCTCTTATTCTGctgct
aattaaattcgaataattcaatattttattacagtgtagatagaccttaa
ccttgttaaaattttcctttttgttagtattggtttttattttacGTGCT
CGTTtgctaaagtttcttttttgttgttgaaaatgATATCTGTTAAAAGA
acttctgtcttcaaattacccccttTTATTCACC
Run BLAST on NCBI

protein sequence of TCONS_00013587-protein

>TCONS_00013587-protein ID=TCONS_00013587-protein|Name=TCONS_00013587-protein|organism=Clytia hemisphaerica|type=polypeptide|length=99bp
MMKTTALITIICNLISITNATLYTDYETKNGKKYKLGYGCHNNYCWSYCG
SNWEGGEWCYTRAKRNDPYLDIYGRYYESCFTDSDCSDKLDECYGNCTL
Run BLAST on NCBI

transcript from alignment at sc0000170:43119..45150-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013587 ID=TCONS_00013587|Name=TCONS_00013587|organism=Clytia hemisphaerica|type=transcript|length=2032bp|location=Sequence derived from alignment at sc0000170:43119..45150- (Clytia hemisphaerica)
TTTTTAAACTAAATTTTGACAATGCATGTTGGAAAGCTAAATAGGCACAC
GTGACTTTGCAATAAAAAGGGCTTCGATTTCCTTTTAAATTCACTTGGTT
TGTCAGTAGCAAGCTTGCCGCATCAAAAAATTGAAAAAAGCTCTCCATCG
AGTTATTCGACAGGAAATCAATACAAGGTAAGAAGTTAGAATAGGCTATA
GTGTAATACAAATCACCATCCAAGAACAAAGCCCAAAGCTAAAAAAAAAA
CTCGCAAACGGGTTTTTTGTCGCAAAGAATTTACAGTCTGTAGAGTTTGC
CTTCCACCGATTTTTCTCCGTATACCACCATAACGCCATACCGCCATATT
TTCCCGCCTTTACTATCACTGTAACGGATGATAACACCGTCTAGGTAAGA
ATAGAGAGTTTCGAAAGTTAGGCCAATCAGCTGTAATTTAAATCTTCTTT
TATATGAAATCTCTACTGATAAACATTTTTTGTGAAAGTTGTCTGTTTTT
TTTAAACCTACCCGTATGTAAGATTTGTAGCTGTTCATTTTCTACACACA
GATTTCTGCAAAGCCCGAAAGGCTAGATGTCGTGCTTTAAGCCATCGCAG
GCAAAAAAAGAGAATGTTCCAAGAAATATAGATATTATTGTTTTCGAAAA
TCCGCGAAGCTTCTATTGGTCAAACGCTGAAATTCTATTGAAATGTCATG
TGACATAGGTAGGGTTTCCTGCCAAGATACGACACACTTTTTAGCCAAAG
CACGACATCTTGTCCATTTTGTCTGTAGTTGCGTTCATAAAAACGCTGGA
GAATGGTCGCGTTGATAAGTTACCAAGAAAATCTCTCTTTTTTCAGGATG
ATGAAAACGACAGCGTTGATTACTATTATCTGTAATTTGATATCAATTAC
CAATGCAACTTTGTACACTGATTACGAAACCAAAAACGGAAAAAAGTATA
AACTCGGTTATGGGTGTCATAATAATTACTGCTGGTCATACTGTGGAAGT
AATTGGGTAAGTCCTCAAAGACAAATAGATATTGTTGATTTTGATTCCAT
CAGCACTCGATTTGAAAACGACTGTATCTTTATTAGCTTAAGGTTCAGTT
AAAATTATTCAACCAAGTTCTTTGGGGGGGGGGGGGGTAATAATTTTATT
TTGAGAACTTTGAGAAGAGAACCTTTTAGGTCAAAAAACGGTCAAAATTT
AGCCATATCTTTTTTAAAATTTGAACCCTCCTTCTTTGCAATTAAGATAA
TAGCAAAAAATAACTTCAATAATGTTTTTTTATAGGAGGGTGGCGAGTGG
TGTTACACCAGGGCTAAAAGAAACGATCCTTATCTCGACATATACGGTCG
CTACTATGAATCGTGCTTCACAGACAGTGATTGTTCAGACAAATTGGACG
AATGTTACGGTAATTGTACTTTGTGAAGCAAAACAGAATTAATTTTTTTT
TTTGACTTTTCTATATTTCACTGTAGTCAAATTTATGTTTAAAATACCTT
AGAAATATAAATATACCATATATCAGGTTTAGGCATATAATTAACTTATT
CTGAATCGCAGACATCTATAGATATACTTCCTAAATAAGAAACTCTGTTC
GCTAGAGGATGAGCAAAAGCCAACTTTGGCTCGGACATACCCGTCATCTC
GCAAACCTAGCACCCCGTACCAGAATTTAAGATAACGACTAAATGGATAT
AGAATTTTATCTGTTTTTGCATAACCGTGAATAGCATGGCCAAAATTGTA
GCTTTAACTCTTTTCTGCTACTCTTGTCTCCCGAATAGACGTCTCCCCGC
TAATTGTTGAGAGAAAAAAATCCATCCCCTCGCTCTTATTCTGCTGCTAA
TTAAATTCGAATAATTCAATATTTTATTACAGTGTAGATAGACCTTAACC
TTGTTAAAATTTTCCTTTTTGTTAGTATTGGTTTTTATTTTACGTGCTCG
TTTGCTAAAGTTTCTTTTTTGTTGTTGAAAATGATATCTGTTAAAAGAAC
TTCTGTCTTCAAATTACCCCCTTTTATTCACC

Coding sequence (CDS) from alignment at sc0000170:43119..45150-

>TCONS_00013587 ID=TCONS_00013587|Name=TCONS_00013587|organism=Clytia hemisphaerica|type=CDS|length=600bp|location=Sequence derived from alignment at sc0000170:43119..45150- (Clytia hemisphaerica)
GAGGGTGGCGAGTGGTGTTACACCAGGGCTAAAAGAAACGATCCTTATCT
CGACATATACGGTCGCTACTATGAATCGTGCTTCACAGACAGTGATTGTT
CAGACAAATTGGACGAATGTTACGGTAATTGTACTTTGTGAATGATGAAA
ACGACAGCGTTGATTACTATTATCTGTAATTTGATATCAATTACCAATGC
AACTTTGTACACTGATTACGAAACCAAAAACGGAAAAAAGTATAAACTCG
GTTATGGGTGTCATAATAATTACTGCTGGTCATACTGTGGAAGTAATTGG
GAGGGTGGCGAGTGGTGTTACACCAGGGCTAAAAGAAACGATCCTTATCT
CGACATATACGGTCGCTACTATGAATCGTGCTTCACAGACAGTGATTGTT
CAGACAAATTGGACGAATGTTACGGTAATTGTACTTTGTGAATGATGAAA
ACGACAGCGTTGATTACTATTATCTGTAATTTGATATCAATTACCAATGC
AACTTTGTACACTGATTACGAAACCAAAAACGGAAAAAAGTATAAACTCG
GTTATGGGTGTCATAATAATTACTGCTGGTCATACTGTGGAAGTAATTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007591XLOC_007591Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013587-proteinTCONS_00013587-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013587-exon-sc0000170-1575043694:44974..45150TCONS_00013587-exon-sc0000170-1575043694:44974..45150Clytia hemisphaericaexon
TCONS_00013587-exon-sc0000170-1575043694:44145..44304TCONS_00013587-exon-sc0000170-1575043694:44145..44304Clytia hemisphaericaexon
TCONS_00013587-exon-sc0000170-1575043694:43119..43865TCONS_00013587-exon-sc0000170-1575043694:43119..43865Clytia hemisphaericaexon
TCONS_00013587-exon-sc0000170-1510915933:44974..45150TCONS_00013587-exon-sc0000170-1510915933:44974..45150Clytia hemisphaericaexon
TCONS_00013587-exon-sc0000170-1510915933:44145..44304TCONS_00013587-exon-sc0000170-1510915933:44145..44304Clytia hemisphaericaexon
TCONS_00013587-exon-sc0000170-1510915933:43119..43865TCONS_00013587-exon-sc0000170-1510915933:43119..43865Clytia hemisphaericaexon
TCONS_00013587-exon-sc0000170-1491911889:44974..45150TCONS_00013587-exon-sc0000170-1491911889:44974..45150Clytia hemisphaericaexon
TCONS_00013587-exon-sc0000170-1491911889:44145..44304TCONS_00013587-exon-sc0000170-1491911889:44145..44304Clytia hemisphaericaexon
TCONS_00013587-exon-sc0000170-1491911889:43119..43865TCONS_00013587-exon-sc0000170-1491911889:43119..43865Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000170supercontigsc0000170:43119..45150 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.770374	0.668599	1.00892	1.21268	0.984214	0.691323	1.04257	1.75687	0.609079	1.01085	0.575099	0.270034	0.78201	1.03616	0.805817	0.691812	0.791381	0.81114	0.387912	0.822119	2.23452	1.65631	4.68753	9.46312	27.556	24.7097	8.1171	12.8162	1.21157	1.37552
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00013587 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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