TCONS_00013577 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013577
Unique NameTCONS_00013577
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2259

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013577 ID=TCONS_00013577|Name=TCONS_00013577|organism=Clytia hemisphaerica|type=transcript|length=2259bp
GGAACTGCTATCACATCTTGGCTCGCAACAAACACAAATCGATTCTTTAA
ACCGATTAGGTAAACAAATGCAAGAATCGGGAAATAGGGAAACAGCCCAG
CGTGTTCAAAACCGTTTAGACGtcatgaatgaaaattggaaattGTTGCA
ACAGCGTGCTCTCAGTGAAgcccaaaatttgaaattccaagaaaatattt
ttgtccaagAGTCTGAAACCCAACAACTAAAAGACATCGAGAATCAGATT
CGTTATCCATTCCCACATGTTGAACAACATCGTCAAGATTCTCCAGAACT
GTCAGATGATCACTACAGATATCAAATGATTTATTCCGAGCTTTTTGATT
GGTTGCTATCTTGCGAAGAAAGCTTGATCCGCCAATCACCGGCCTTCATT
AATGCTGACATCATCAAATGTCGTTTGTTTGGCTTACAGGATTTGGCGAC
CGAAGTTTGTTTACACGAATCACAACTCAAACGATTAGAAGATTCATGGC
TCGAATTAACTGAAGTGAACGAGTCCTTAACAAATCAACATCAAGCTATA
CTTTCACTATGGCGATACGTCACTGAAAAACTGGTACATCGAGGTAAAGA
ATGGTATTTGATCNAAGCTATACTTTCACTATGGAGATACGTCACTGAAA
AACTGGTACATCGAGGTAAAGAATGGTATTTGATCagtaaaaagaaaatc
catCAAAATACAGTCAAAGACTTGAACCTCACCGATGATTTGGTTTACAT
GTGGACCCACGAAGTCTCAGGCACCATCCAAAAAGCCAAAGACCTTTTAA
AGTTTGTTGACCCAGATTGTGAATGCAGTCGTGCGGCAGTTTCTGCATAT
TCGATCTTATTGACATACAATTTCAAAGTGCTCAATCTGCTATACAGCTT
GACAGAGCATATCCCACAACGGCATATTAATGACTTGACAAACAAAATGA
CTGACCTTCAAGAAATGTTGAAATCGAAACTGGACGACTATAAATCACCA
GAGACTTCAGATTCTGAAAGTATGGACAATGACATTGCTGGGGATTCGCC
ACAACGTCCTCAAAATCTTACCACGAGTCGCCGAAAACGATTACCATTAG
ATTTTGAAGGGCCTAAATTCTTTGAGAAGGAGTTGaataaatttcagaaa
tttcttTCGAACATCAAATTAGAAATCAAAGATACCGTGTCGTGTTCTGA
GATAGGAGCTCAAGAAGAAATGCACCTTTATCAGAATGTAAGCCAAGAGC
TGAAGAGCCGCGAACTGCCTCTGAGCTATTTCTTCATAAGTCTACACATT
GCAAATAAAGACTCGCATCTCTCCAAGATTTACCACGACACTCTACGCGA
AAGCCGAACACTCTATGAACGCATGTCTGACCAACTGGAGCAATTGACGG
AAATTCGATTCTTATACTCGTTACTTCACAGTCGTAACATGCATTTGACG
GGTTGGATAAAGAAGACCATGAAAAATTATATCCAACCTGCGATGACAGA
TCCTAATGAAAGCTTGAACAAAATCATGCTGAAATTAATGCGTTTGAAAG
ATTTAGAAAAGAAAATGGCGGATAAATCGAAATATAAAGACCAATTTATT
GCGGATGCTAAAAAGCTGATAAGCATCACTCAAAATAAGGGTGTTAATGA
ACTAATGAAGATTATGGAATCTCTGTGGAAGGAACTCGAAGAACAACTAA
AAGATATACGAACGCTGTTAGAAGAGAATGTCTGTATATGGAAAGATGTT
GTTTCGAAAAGTGAGCATCTGGAAAATTGGTTACGCTCGGTCAAAAATAC
ATCTTTTGGAAGACGTTCGCCTACAGATCGTCTCTCGTATCGATCATCTG
ACTCTTGTTAAAGAACAAATGGAAAACGGACATTTAACTGATATGTTGAC
GTCAATAAATGACATGGTCTCTGAAGCCTTTGCAATGTTGGATAATCACA
GTGTAGAAGTGTTTGCAACTAGCTTGGACGTACAAAGAGAACTGGCTGAA
TTACAGCACATGCGCAGTAGGTTGAACGCTGCAGAACCTGCACTGGCGAA
ACTACAACAAGCAGGTCTCCATAACCCAGAACTAAACCTTGAAATTTCAC
AAATCGCCAAATCTCGCCATAAAGCTACAAAACAATTACATGAGAGCGTT
AACAACCTCCAGAGATTACATCTTGATTTGGAAGAGATCGAGGTTGCCAT
GGAAACCTGTCAACATGGAATCGAGGCTGTCATTCAGAAGCTGAATGTTA
CCAAAGCCT
Run BLAST on NCBI

transcript from alignment at sc0000170:328046..332065+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013577 ID=TCONS_00013577|Name=TCONS_00013577|organism=Clytia hemisphaerica|type=transcript|length=4020bp|location=Sequence derived from alignment at sc0000170:328046..332065+ (Clytia hemisphaerica)
GGAACTGCTATCACATCTTGGCTCGCAACAAACACAAATCGATTCTTTAA
ACCGATTAGGTAAACAAATGCAAGAATCGGGAAATAGGGAAACAGCCCAG
CGTGTTCAAAACCGTTTAGACGtcatgaatgaaaattggaaattGTTGCA
ACAGCGTGCTCTCAGTGAAgcccaaaatttgaaattccaagaaaatattt
ttgtccaagAGTCTGAAACCCAACAACTAAAAGACATCGAGAATCAGATT
CGTTATCCATTCCCACATGTTGAACAACATCGTCAAGATTCTCCAGAACT
GTCAGATGATCACTACAGATATCAAATGATTTATTCCGAGCTTTTTGATT
GGTTGCTATCTTGCGAAGAAAGCTTGATCCGCCAATCACCGGCCTTCATT
AATGCTGACATCATCAAATGTCGTTTGTTTGGCTTACAGGTTTGTATTAT
TAAGTACATTTGTATGAAGTTGTTTTTCTTAAATGGAAATTCTAAAAGAG
TTTTGTGCTTACACATCTTTTGGAAAACGAAAGAAAGTGCAACTTCCTCC
TTTTCCACttttgagaatttcttttgttcaTTCTGCTATGtcacaggccc
ggcggaagcggggacCTCCCTAAGTTtgagaaaatgagatttttttttct
caaattcctagcgaattttatcttttgagccttcagcctcccaactttta
cggttgttccgctgGACCTGTATCattaaaagaatatttcaaattggCCC
TTTGTTATACCAAGGTAATTGCTGTTTCATTCtgaactttaattttgatt
aatttaagATTGTTGTTTTTAGctgttcttttataagaattcaCAGTAAG
TGCATAGAAGAATCATCACAAAATCTCACTCAACCTTTTTCTAATGTAAC
GTTTTCAGAGTTGTTTTAAACAAGGATCAAAGAATATCAACATACTTTTG
ATATTAAAAGTTATATATTTAACGATATATTAATGCGTGCTGTGCCGCGC
GGGattgggaaaaaataaattgttctctttaaatGATTTTGGTTTAAAAC
CATGTCTAAAGCAAATGGTATGAGACATGTGTACTGATGTCCTTTAATTA
TCACGATAAGGCTTTCAAAATTCTGTTTTTCAGGATTTGGCGACCGAAGT
TTGTTTACACGAATCACAACTCAAACGATTAGAAGATTCATGGCTCGAAT
TAACTGAAGTGAACGAGTCCTTAACAAATCAACATCAAGCTATACTTTCA
CTATGGCGATACGTCACTGAAAAACTGGTACATCGAGGTAAAGAATGGTA
TTTGATCNAAGCTATACTTTCACTATGGAGATACGTCACTGAAAAACTGG
TACATCGAGGTAAAGAATGGTATTTGATCagtaaaaagaaaatccatCAA
AATACAGTCAAAGACTTGAACCTCACCGATGATTTGGTTTACATGTGGAC
CCACGAAGTCTCAGGCACCATCCAAAAAGCCAAAGACCTTTTAAAGTTTG
TTGACCCAGATTGTGAATGCAGTCGTGCGGCAGTTTCTGCATATTCGATC
TTATTGACATACAATTTCAAAGTGCTCAATCTGCTATACAGCTTGACAGA
GCATATCCCACAACGGCATATTAATGACTTGACAAACAAAATGACTGACC
TTCAAGAAATGTTGAAATCGAAACTGGACGACTATAAATCACCAGAGACT
TCAGATTCTGAAAGTATGGACAATGACATTGCTGGGGATTCGCCACAACG
TCCTCAAAATCTTACCACGAGTCGCCGAAAACGATTACCATTAGATTTTG
AAGGGCCTAAATTCTTTGAGAAGGAGTTGaataaatttcagaaatttctt
TCGAACATCAAATTAGAAATCAAAGATACCGTGTCGTGTTCTGAGATAGG
AGCTCAAGAAGAAATGCACCTTTATCAGGTAAGATACCGAAAATTATCGA
TTTTTACTTAAGCTTAATCTCCATAGCTGGGCGCAAGCGATTGCAGTTTT
CAATCAGGGCTTCTTCCCTATTGGTTGAAAGTATTTCTATTGGTCGAATC
ACGTGTAACCTAATATTTCCTCCAAGCAATTTATACGCATTTCTGCAAAT
CTTTTCCGACTTAAAATCTAAATTCTGCAGGGCTGAGGATTGAAACCAAC
AAGGGTGATCGTAGCATGTGCTTTTTTGGTACCGCCCTTTTGTAATTCTT
GCGAACGACTTTCCAAACTATCCCTATCCGTATTCTTAAACGTACTCTGG
TTCAATAATCGATTCAGGTTTTATTTTAAGAGGCCATCCCTTTTTTTCAG
AGGAAAGTCTGAAACCTTAGATCAAAGGAAACATTTTATCTCAAACTGTT
AATGATTTAAAAGGATATCCTATTTTAAGAATCGATATTGTTTTGAAATG
TCGAATGGTCTAGTTGAGGCTTTCCGATGAAGAAGGTACTCGTCTATATT
AAATTTCGGTTTCATGTTCTAGAATGTAAGCCAAGAGCTGAAGAGCCGCG
AACTGCCTCTGAGCTATTTCTTCATAAGTCTACACATTGCAAATAAAGAC
TCGCATCTCTCCAAGATTTACCACGACACTCTACGCGAAAGCCGAACACT
CTATGAACGCATGTCTGACCAACTGGAGCAATTGACGGAAATTCGATTCT
TATACTCGTTACTTCACAGTCGTAACATGCATTTGACGGGTTGGATAAAG
AAGACCATGAAAAATTATATCCAACCTGCGATGACAGATCCTAATGAAAG
CTTGAACAAAATCATGCTGAAATTAATGCGTTTGAAAGATTTAGAAAAGA
AAATGGCGGATAAATCGAAATATAAAGACCAATTTATTGCGGATGCTAAA
AAGCTGATAAGCATCACTCAAAATAAGGGTGTTAATGAACTAATGAAGAT
TATGGAATCTCTGTGGAAGGAACTCGAAGAACAACTAAAAGATATACGAA
CGCTGTTAGAAGAGAATGTCTGTATATGGAAAGATGTTGTTTCGAAAAGT
GAGCATCTGGAAAATTGGTTACGCTCGGTCAAAAATACATTAGATTGTGC
GGAGGAGGAGATTTTTGACGTATCTTTATTGGTAGACCACGTCGAATCAC
TGGTCAAACTCAATTCTGAACTAAATTCGAAAGAAGAAGATGTGTCAAGG
ATTATGGAACTTAAGGATCGAATCTCCAGTAGTCATAAATCTCCACAGCC
ATCTACTGGTGGTGAATTGGAATCAACGGTGCTAAATCTTCCACATCTTT
TGGAAGACGTTCGCCTACAGATCGTCTCTCGTATCGATCATCTGACTCTT
GTTAAAGAACAAATGGAAAACGGACATTTAACTGATATGTTGACGTCAAT
AAATGACATGGTCTCTGAAGCCTTTGCAATGTTGGATAATCACAGTGTAG
AAGTGTTTGCAACTAGCTTGGACGTACAAAGAGAACTGGCTGAATTACAG
GTACAGCATTTTATTGCAAGTACACCTGACCTTCTCTTATTCGATCCTCA
AGGGGCTAATAATTTTAAACTACTCGACTAGtggagattcgaattataga
aagttgACTGAACTTTAGTCAGACCTTTACAAGCCGACCTTAACTCTGAC
ATAGTCCAAAACAAACTGGTGCACATAGTTCGTATTCTTAAGGGGGGGTG
ACACCTtccgaaaaaatgaagaaggggggtcagaaattttcatgaaaaag
gggAAATAGCAACATATATATTTTGTAGATTATTTTTAAGCActgataaa
atattttctctctttagCACATGCGCAGTAGGTTGAACGCTGCAGAACCT
GCACTGGCGAAACTACAACAAGCAGGTCTCCATAACCCAGAACTAAACCT
TGAAATTTCACAAATCGCCAAATCTCGCCATAAAGCTACAAAACAATTAC
ATGAGAGCGTTAACAACCTCCAGAGATTACATCTTGATTTGGAAGAGATC
GAGGTTGCCATGGAAACCTGTCAACATGGAATCGAGGCTGTCATTCAGAA
GCTGAATGTTACCAAAGCCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007584XLOC_007584Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013577-exon-sc0000170-1491911889:328046..328484TCONS_00013577-exon-sc0000170-1491911889:328046..328484Clytia hemisphaericaexon
TCONS_00013577-exon-sc0000170-1510915933:328046..328484TCONS_00013577-exon-sc0000170-1510915933:328046..328484Clytia hemisphaericaexon
TCONS_00013577-exon-sc0000170-1575043694:328046..328484TCONS_00013577-exon-sc0000170-1575043694:328046..328484Clytia hemisphaericaexon
TCONS_00013577-exon-sc0000170-1491911889:329179..329973TCONS_00013577-exon-sc0000170-1491911889:329179..329973Clytia hemisphaericaexon
TCONS_00013577-exon-sc0000170-1510915933:329179..329973TCONS_00013577-exon-sc0000170-1510915933:329179..329973Clytia hemisphaericaexon
TCONS_00013577-exon-sc0000170-1575043694:329179..329973TCONS_00013577-exon-sc0000170-1575043694:329179..329973Clytia hemisphaericaexon
TCONS_00013577-exon-sc0000170-1491911889:330518..331083TCONS_00013577-exon-sc0000170-1491911889:330518..331083Clytia hemisphaericaexon
TCONS_00013577-exon-sc0000170-1510915933:330518..331083TCONS_00013577-exon-sc0000170-1510915933:330518..331083Clytia hemisphaericaexon
TCONS_00013577-exon-sc0000170-1575043694:330518..331083TCONS_00013577-exon-sc0000170-1575043694:330518..331083Clytia hemisphaericaexon
TCONS_00013577-exon-sc0000170-1491911889:331290..331495TCONS_00013577-exon-sc0000170-1491911889:331290..331495Clytia hemisphaericaexon
TCONS_00013577-exon-sc0000170-1510915933:331290..331495TCONS_00013577-exon-sc0000170-1510915933:331290..331495Clytia hemisphaericaexon
TCONS_00013577-exon-sc0000170-1575043694:331290..331495TCONS_00013577-exon-sc0000170-1575043694:331290..331495Clytia hemisphaericaexon
TCONS_00013577-exon-sc0000170-1491911889:331813..332065TCONS_00013577-exon-sc0000170-1491911889:331813..332065Clytia hemisphaericaexon
TCONS_00013577-exon-sc0000170-1510915933:331813..332065TCONS_00013577-exon-sc0000170-1510915933:331813..332065Clytia hemisphaericaexon
TCONS_00013577-exon-sc0000170-1575043694:331813..332065TCONS_00013577-exon-sc0000170-1575043694:331813..332065Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000170supercontigsc0000170:328046..332065 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.221304	0.467188	0.439041	0.0986164	1.99885	1.24574	1.33196	2.03585	0.537508	1.24167	0.678172	0.663696	0.528192	0.315582	0.289408	0.504791	1.4002	0.698279	0.514804	0.742935	1.39399	0.987277	0.113612	0.590751	3.53197	3.67759	0	0.926467	0.72816	0.392077
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00013577 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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