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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013479 ID=TCONS_00013479|Name=TCONS_00013479|organism=Clytia hemisphaerica|type=transcript|length=1918bp
AGAAAACTTGTCAAAACTAATATTTATGTTGAGGTGTTTGATAGAAATTT
ATCTCTGAGGGTATACTCATTAAAATGTTGAATTTAACAACAACCGTGAC
TCCAGATAcaaaccaatttaatatcacatGTAATGGTACCCTTGTTACAC
ATAACACAACCAATATAACATGCATCCCAAATAATACAAAGGCCGTCAAT
TTTCCAATACCTGAATACCAGCCCTCCGTATGGGAGATTGTATCGTTATG
TTTTATCTCCGTCATTGTGATTTTCGTCAATCTGTTGGTTATACTGGCGT
ATTTTAATGGAGCTCGAAGATTAAGAACTAAAACCAATTTATTTGTTATT
AACTTGGCTGTTACAGATACGATGGTTGGATTGATTTCAATACCATTCTG
GATTTCTTCGTTGCTCAACTTTATCACGAAGAATCATCCGTTATACAAAT
ATCTCATCATATTGGATGTTCTCTTTGGAACGACGTCAATCTTCTCCTTA
ACCGCCATCAGTTTTGAACGTATGTTCGCTGTCAAATATCCGACAACACA
TCATAATCTCAACGATCCACCGTTTTATTTTATAATCGGAATCATTTGGT
GTATAGGAATTTTAACAGCTGGTATTCGATACAATTTTCCGAATCCTGTT
GGTGAGAAATATTACACTCTAGCCGTCCTCATTGTAGCTTTTCTTCTACC
GTTAGTGATCATCGTGTGTTGTTATTTCATGCTTTTTTACACGGCACGAT
CCATGATGGTTGCCAGTAACCAAGAGAACAATTTATCACGTGATTTACGT
GTAGCTAAGACCATTTCGATTATTATTGGACTTTTTGTCATATGCTGGTT
ACCTTTCTTCACAGTAAACATGTGTTATTATTTTGGTACACCGTCTTTAA
GAACGAAAATGTTGTCTTCCATTGGACTTATATCAGCCACTAAAGGGATG
CATTATTCAAATTCCATGATGAACTTTTTCGTATATGCAGTTCGTTCACC
TGATTTTCGAACGGCTTTTAAAGCTTTATTGTGTAGTCGTTGTGATAAGA
AAGTCCTGCGAGAGCGATTACGGACTTTTTCGAACGCTCATATGCTGCTT
CCAGGATCTTTACGAGTTCAGAGATTAAAGACTTCAACAACTTCTGGAGG
GTCTGGAGGAAGTCTTACAAACGTTACAACGCTACAAACTACCCCTAATC
AAAGTTTGGTTAATTTACAGAACAATTCAGGCTCTCTTTCACTCTTGAGA
AGTGATTCAGGTGCAACCTCCTTATTAAGAAATGGTAAAATACCGAACAA
TAATGATGATAATGTTTTCAATTGAAGATGCACTAAAGattgatatatat
ttttctattaAATGGGGTTTCTTACTAACAGATTAACCCATGGCCTAGGT
TCACCCTTACGGGTTGATGTCGGTAACGTGGTGGGTCAAAATTGGGGCAA
ATCGAGAGTTGGAATTCTGGCGCCctgcattaaaaaaaaatctttgtaaa
agttACTTAACGAGTTGCCCCCTGTTGCCACTTCGCTCCTGGTTTATctg
caatcatggtcgtaatatttgagaaaaaagggaaattcaccgggaaattt
tgaaaccacaatcgatttgtaggtgctctaaagtaggttggaagggtaga
gttttaacataagACTTCAGACTTAggcctcttttgacgtcaatgcaatg
actttctTCAAGCTTTTCCAAACAAAGATTTTAGCTTCCAACTTTTTTCC
CAAGCAACTCCTGCTTACTCTAACTAACTCTAACTAAATATCTGATGTGC
TATCCACTTATACATAATTGAAACTAAATATATTGAGAACACGTTCAGAC
AATCCtgcttgaaaatttcaaatagcaTCAGCCATTAATTTATTTAGGTA
TGGTTTTTCTATtacaaa Run BLAST on NCBI transcript from alignment at sc0000168:419288..425938+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00013479 ID=TCONS_00013479|Name=TCONS_00013479|organism=Clytia hemisphaerica|type=transcript|length=6651bp|location=Sequence derived from alignment at sc0000168:419288..425938+ (Clytia hemisphaerica)
AGAAAACTTGTCAAAACTAATATTTATGTTGAGGTGTTTGATAGAAATTT
ATCTCTGAGGTAGcttagttcatttgttttagaAATGTTATATGAGATAT
AAACAGCATTACAAGTCTGTGTATTTTCTGTTAATAATATCGAGTTACTT
CtttctttatgatatttttgaccctgcaaaattttcttggttttTATTTG
ATATGAATCCATTTTGGTTTGGTATAAAATTCTTATATAACTTGTTTCTT
GTCTTGAAGGATTCTTCCAAAGACCCCATCTTGATCGAGTTTATCCtttt
ttctgattggttgattcGTTCTGCTTGATTCAATTCTATTGGTTTATGCA
TTCTCAGACTAACAATCTTTTAATGAATTTTAGGCTGTTCATAAGCtgtg
atttattttctttaattctAATTATCTAtacctttttgaaaataaaggca
GTATTAAGTAATTTGGTATTTAGTGATTTTATGACAGAGAAGAAAGCCTT
TGATTTGTAAAATCTCCGAAACCAAACGCCAGTTGCGACTTTGAAGTAAG
AGGATTTTCATGGTATGCGTGCGTGTGTCGGCCTGTACATAAGACTTTGT
GTACGGTATTGCTTTAATAAGATATATACAGGCGGGTACGCACACAAACG
GTTCACTGCGTAAATGGCTTCTGCTTAACTCGCTTATAGTTCTCTTACTT
CTCTTCGGAGTAAGTCGAGCATGTCAATGCATGCACGCATTCTAcattcc
cagctgacacacaacgttgtttcgacgtttatctaacgttcacaacatcc
atataacgttagatgaacgttgaaacaacgttgtgtgccagctgggtttg
tTTCTTGTGGGAGGTTCtatttttgatttgttgaaagTTTTCCTCCAAGA
TTTGTTTGTTGTTTGGTCGTCTGAAAGCTTGGCTTTTCTTTGGTTTCGTT
TGTTTTTAGATTATACCATTGCTACTTTTCAAGGACACTGACCCAGGAGA
TGTATTAGATTTTActcaaaaagctttttttaataagaacctGTTTCTGA
TTCGGGTcaattgttctcattttttggcACTCTTATCTTGCTCTAATATT
TATGGTAGAACTAAGATATTTTAGGCTTAGTACtgctttttcattgattt
ttcctTTAATTTGCTCTTAAATACTATTCAAGGTTCAGCATTGTTCTCAT
AAAAGAACATGTGTAAAGAAGTTTACATATTGGAGAATACTTAGTCGGTT
CTCATTCCAAAGAAAAATTCTTCAAGGTTTTAATAAGGAAGAGAAAACAA
GCTTAACGGTATTATTCGCGTGTAGAAAATCGCTGAAATCTGACATTTAT
GATTAATAAGAACTGATTTTTTGATTGTTATAGCTTGATAAGAAAATGCC
TTGGCAATTAATTTGAGATTGAAGTTCTCATTGTATGTTTTGATCAAGCT
TTCATCCAATTAGAATAGAGGTAGCATCAAATTTAtgattttcagctttt
ttcctGTTTGATATGATGTAGTGAGTTTTTACAGAAGTATATTAATTGGC
TTAATGGTATACATGTAGTATCTATCGATTCGAATGTTCTCAAAACACTG
AGATAGTtcttaaagcctttggaagatCAGCATTCTCTTTCAACGTGTCT
TTGCCAGGTCAGCGAGTTTTTttcaaacacccctgtctcgttgATCTGGT
GATCTGGTTGAAGTTTTGAAATCCACCGGGATGGCTACGAATATACGGTT
CGGCGGAACCGGgtgtgagggagtctatccccttttctatttgcgctaga
cctgggagatcgaatgctgggGTGGAGCGCCTACACCTACTCtaagctcc
cagtaacttaccgcttagttcagattacccaatctaagctactcattcgc
TGAGTTAGCAGtaaccggggatcgaacccacaacccttagattctaaggc
gaatgctctaccgactgagctacccggcctCGAATAGTTAATACCTGTAc
tgagtttttgtttttgtttgtccCCTCTGAGTGACTTTCACGTTTACCAT
GACGGTAAAATGTCACTACACTGTGCTTCTGTTTTCCCAATATCTTTTCT
CAAATTGACCCAAGTTTGTCAACTAGTGAAAAggcttttgaatattttat
tttggtctcataataaaaaattaaatttatagTCAGAGAGAACTACCTCA
TCCCTTAACTGGAGAGTGATTGTagtaaaattaattttccttTCAACTGT
TTTAGGTGTTTTATAAAACCCAGGTTTTATTTGATATTTGCAGAAATATT
TACACTaaaatttctatttattttggaaatttttgtctGTTAGTTTTCAA
ACAACTTTTTCATTTAGAACGTTTCAGTTttgggattttttattttcatc
aggGCAGATTTTTTCTGTTTGTTTAtcaattttccctttttctggAATAt
ctggaaaaagaaaatattttccaagaatGAAGGTCCCGTTCAACTTTATT
AAAAACCTGCCTCGTTCATTTTTCACTCACTTATTTAGCCAGTAAATTTC
TACTCGAGTCAGTTgaagcattgagtttcaagcccgaagggctagaggcg
agcctttaacccttctcaggcaagagaaattgaagccacttatttcccat
ccaaaacgcgcatagaaagcgccgtaatcatgacgacagaTTGTATTTAG
CGGTTCGTTTGTTTTAGAGTCGACtaacctttttttaaatctaggtATAG
ATTTTATTTAGTTTTAATCCGgaatttgtgtaaaaactacgcgaatgcgt
tctggatgggaaataagtggtttcatttcccatccacgagtctcgcctct
agcccttcggcctTTAAACTCGATGAGTTGAAGAGGATGGAATGATCATA
CATTAGCAGTCGATTTACGCATCGTTGAGGGAAGTGCAAAGAAAATTTCC
ATCTTTGATGCTTATAAACGAATAGATTGTCAAGTTATGTAAgcttaaaa
atgtattttgatTGGTGATTATATACTGGGTGTCCCAACGAGTGTTTGTT
ACTGTCGGGGTATACATTCATtgtacattttcatttttacaaaaCTTGAT
CGTGAGGCTGTTACAATCTACTCCTCTTCGTTTTATAAATGGCAAATGGC
ATCAGAACTTCAAGAATTCTTTAATAAGATATATATTCTTCCCGAGTTTC
CTGAATACCCTCATTTAAGTGGCTCAACGATTTAGCTTCAAGTTAGTGCT
CGATGTAAAAACTCTCCTGTTCAGGTTATCTGAGTAACAAGACCTTTTTA
GTCTTAAAGTTTGTCCTGTTGTGCTTGTTTTCTTAAAACAGTGATTTGAA
TGACCTTTCAGTTTTGTTGATTGATAAGGTATCTCGTTTTGCGGTCGAAT
TTGATACTTATTAACAGGGAAGTTTGGGGTTTTTTCTTTCACCTAAAGAA
TTACTTTTCAACAACCCTTAAAATATGATACTTTGTTGGAAGGATGatca
cagattttttttctattctggAGAAAATTGAAAAGCTTATGTTAGGGATG
TGAAGTATTTGGAAGTGTTTCGTACTTATAACTTTTCAAGAAACGATTTC
TTGACCTCGCGGGATTTTTAACCCGCAAAAGCATTGTCTTAATTTCAGAC
ATCTACAAAACTGCAGGTAGTATAGTGTATAAGAGCATAAattcgttagt
ggatgccagcgaCGTAGTGAAAGTACGGTTGTACAGtaatctctctctaa
ttcaaagaaACGTCTTTGTCCCAccaagatcgaattagagagaggtaGCT
GTATTTATTTGGCAATTTTATTCTTAACTGTACCTTTTCTTATTTACAGG
GTATACTCATTAAAATGTTGAATTTAACAACAACCGTGACTCCAGATAca
aaccaatttaatatcacatGTAATGGTACCCTTGTTACACATAACACAAC
CAATATAACATGCATCCCAAATAATACAAAGGCCGTCAATTTTCCAATAC
CTGAATACCAGCCCTCCGTATGGGAGATTGTATCGTTATGTTTTATCTCC
GTCATTGTGATTTTCGTCAATCTGTTGGTTATACTGGCGTATTTTAATGG
AGCTCGAAGATTAAGAACTAAAACCAATTTATTTGTTATTAACTTGGCTG
TTACAGATACGATGGTTGGATTGATTTCAATACCATTCTGGATTTCTTCG
TTGCTCAGTAAGtgatgatattcatgacgtaatgttttctgcGGATATTT
CCcagatttttgcatttttgcacCAGTAGTGGCAAATCAAAGCTAGAGAA
AAATTGTTTAATATTTGTCATTACTGGCAAAACACCTCTgttcaaaagaa
aacattatGTAATGAATGGATCAAATTCCAATTTTAAACTTGTACAGAGT
CACTTAGCTtacattttcaataataaaaAAGGGTCGAGATCTGCTCTTGG
TACGAGATAGAGCTACTTTTTGGACATTCTTACCTCATAATTCGTTAAAT
GCGATTTTAGGGATAACACCGTTTATTGAGATACAATGCTTTAGAAACCG
GTATAAAAAATGCAGCTTGGGAAAAATGTTGCAGACCCGGGTAAATTGCA
TACCACTGCTCCTCTCCCTACACGACTTTGAGTTGTAGATTCAATACTGA
TTTTGTAAATCGTCTTCTCTTGCACATAAACCCTTTGGAAAGCATTTTTG
AGTCTACTAGGAAGAATTGAAGTCAGAGTTCTATGTCTatgcactgacct
ttatatattccTGGACCAGGTTACTCAATCCCAGCCAACCTAAAGTCTTT
GATccgagtttttttttgaaattggtaccctaatggcggcactactcaat
agcggtgaaaatgcatcgagagcgctagatctaattttcctcgaatactt
ttgatgataatAGTGCCGGTAGACGTAAATTTTTTTGGCTTCTtttcggg
taccaattccaaaacaaactctgatcaaagatggtggatatagcttggtc
cagggatatataaaggttagTGTGTCTATGTCTAAATCAATGCGGCGGCT
TCGGATATTCTACCATTACATCTGGTAAACCCGTCTACCCAGTCTCTACA
GGTTAAAGTATCTCCAATGATAACAATGATAACTCTTTTTTTCCTCATAG
ACTTTATCACGAAGAATCATCCGTTATACAAATATCTCATCATATTGGAT
GTTCTCTTTGGAACGACGTCAATCTTCTCCTTAACCGCCATCAGTTTTGA
ACGTATGTTCGCTGTCAAATATCCGACAACACATCATAATCTCAACGATC
CACCGTTTTATTTTATAATCGGAATCATTTGGTGTATAGGAATTTTAACA
GCTGGTATTCGATACAATTTTCCGAATCCTGTTGGTGAGAAATATTACAC
TCTAGCCGTCCTCATTGTAGCTTTTCTTCTACCGTTAGTGATCATCGTGT
GTTGTTATTTCATGCTTTTTTACACGGCACGATCCATGATGGTTGCCAGT
AACCAAGAGAACAATTTATCACGTGATTTACGTGTAGCTAAGACCATTTC
GATTATTATTGGACTTTTTGTCATATGCTGGTTACCTTTCTTCACAGTAA
ACATGTGTTATTATTTTGGTACACCGTCTTTAAGAACGAAAATGTTGTCT
TCCATTGGACTTATATCAGCCACTAAAGGGATGCATTATTCAAATTCCAT
GATGAACTTTTTCGTATATGCAGTTCGTTCACCTGATTTTCGAACGGCTT
TTAAAGCTTTATTGTGTAGTCGTTGTGATAAGAAAGTCCTGCGAGAGCGA
TTACGGACTTTTTCGAACGCTCATATGCTGCTTCCAGGATCTTTACGAGT
TCAGAGATTAAAGACTTCAACAACTTCTGGAGGGTCTGGAGGAAGTCTTA
CAAACGTTACAACGCTACAAACTACCCCTAATCAAAGTTTGGTTAATTTA
CAGAACAATTCAGGCTCTCTTTCACTCTTGAGAAGTGATTCAGGTGCAAC
CTCCTTATTAAGAAATGGTAAAATACCGAACAATAATGATGATAATGTTT
TCAATTGAAGATGCACTAAAGattgatatatatttttctattaAATGGGG
TTTCTTACTAACAGATTAACCCATGGCCTAGGTTCACCCTTACGGGTTGA
TGTCGGTAACGTGGTGGGTCAAAATTGGGGCAAATCGAGAGTTGGAATTC
TGGCGCCctgcattaaaaaaaaatctttgtaaaagttACTTAACGAGTTG
CCCCCTGTTGCCACTTCGCTCCTGGTTTATctgcaatcatggtcgtaata
tttgagaaaaaagggaaattcaccgggaaattttgaaaccacaatcgatt
tgtaggtgctctaaagtaggttggaagggtagagttttaacataagACTT
CAGACTTAggcctcttttgacgtcaatgcaatgactttctTCAAGCTTTT
CCAAACAAAGATTTTAGCTTCCAACTTTTTTCCCAAGCAACTCCTGCTTA
CTCTAACTAACTCTAACTAAATATCTGATGTGCTATCCACTTATACATAA
TTGAAACTAAATATATTGAGAACACGTTCAGACAATCCtgcttgaaaatt
tcaaatagcaTCAGCCATTAATTTATTTAGGTATGGTTTTTCTATtacaa
a
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00013479-exon-sc0000168-1491911889:419288..419346 | TCONS_00013479-exon-sc0000168-1491911889:419288..419346 | Clytia hemisphaerica | exon |
| TCONS_00013479-exon-sc0000168-1510915933:419288..419346 | TCONS_00013479-exon-sc0000168-1510915933:419288..419346 | Clytia hemisphaerica | exon |
| TCONS_00013479-exon-sc0000168-1575043694:419288..419346 | TCONS_00013479-exon-sc0000168-1575043694:419288..419346 | Clytia hemisphaerica | exon |
| TCONS_00013479-exon-sc0000168-1491911889:423137..423494 | TCONS_00013479-exon-sc0000168-1491911889:423137..423494 | Clytia hemisphaerica | exon |
| TCONS_00013479-exon-sc0000168-1510915933:423137..423494 | TCONS_00013479-exon-sc0000168-1510915933:423137..423494 | Clytia hemisphaerica | exon |
| TCONS_00013479-exon-sc0000168-1575043694:423137..423494 | TCONS_00013479-exon-sc0000168-1575043694:423137..423494 | Clytia hemisphaerica | exon |
| TCONS_00013479-exon-sc0000168-1491911889:424438..425938 | TCONS_00013479-exon-sc0000168-1491911889:424438..425938 | Clytia hemisphaerica | exon |
| TCONS_00013479-exon-sc0000168-1510915933:424438..425938 | TCONS_00013479-exon-sc0000168-1510915933:424438..425938 | Clytia hemisphaerica | exon |
| TCONS_00013479-exon-sc0000168-1575043694:424438..425938 | TCONS_00013479-exon-sc0000168-1575043694:424438..425938 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000168 | supercontig | sc0000168:419288..425938 + |
Blast
BLAST of TCONS_00013479 vs. Swiss-Prot (Human)
Match: SSR2 (Somatostatin receptor type 2 OS=Homo sapiens GN=SSTR2 PE=1 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 4.723e-18 Identity = 75/302 (24.83%), Postives = 135/302 (44.70%), Query Frame = 3
Query: 318 RLRTKTNLFVINLAVTDTMVGLISIPFW-ISSLLNFITKNHPLYKYLIILDVLFGTTSIFSLTAISFERMFAVKYPTTHHNLNDP--------PFYFXXXXXXXXXXLTAGIR----------YNFPNPVGEKY--YTLAVLIVAFLLPLVIIVCCYFMLFYTARSMMVASNQENNLSRDLRVAKTISIIIGLFVICWLPFFTVNMC----YYFGTPSLRTKMLSSIGLISATKGMHYSNSMMNFFVYAVRSPDFRTAFKALLC----------SRCDKKVLRERL-RTFSNAHMLLPGSLR 1115
+++T TN++++NLA+ D + ++ +PF + L + + ++ +D + TSIF LT +S +R AV +P P + + ++ ++ AG+R N+P G Y + + I+ FL+PL II CY + +S + + +V + +SI++ +F+ CWLPF+ N+ TP+L+ G+ + Y+NS N +YA S +F+ +F+ +LC R D K + RL T LL G L+
Sbjct: 73 KMKTITNIYILNLAIADELF-MLGLPFLAMQVALVHWPFGKAICRVVMTVDGINQFTSIFCLTVMSIDRYLAVVHPIKSAKWRRPRTAKMITMAVWGVSLLVILPIMIYAGLRSNQWGRSSCTINWPGESGAWYTGFIIYTFILGFLVPLTIICLCYLFIIIKVKSSGIRVGSSKRKKSEKKVTRMVSIVVAVFIFCWLPFYIFNVSSVSMAISPTPALK-------GMFDFVVVLTYANSCANPILYAFLSDNFKKSFQNVLCLVKVSGTDDGERSDSKQDKSRLNETTETQRTLLNGDLQ 366
The following BLAST results are available for this feature:
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