TCONS_00013445 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013445
Unique NameTCONS_00013445
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length715

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013445 ID=TCONS_00013445|Name=TCONS_00013445|organism=Clytia hemisphaerica|type=transcript|length=715bp
NNAAGACACCAGAAGTTGTCTGCCTAACTGATAGCAGATCACTCTTTGAA
TGTGCCGGTTCAACAAAGGCTGTGACTGACAGACGACTCCGTGTAGAGAT
AAATGCTCTACGTCAAATGATCAATACTGACGAAATCATCCTGCAATGGA
TTGGCGGAAGTCATCAACTGGCCAACGTTCTGACAAAGAAAGGCGCATCC
CCCTTTTCCCTAATGGAAGTGCTTGAATCAGGGGATTCGACATCGGTCGT
AATTAATGGTGAACAATAACCACATCACCATTGTTCgtgttaaaacaaaa
acaaaaaacaacaacaacaaaaaaacaacgGGTAGAAGTTATCACGCTAT
AAGTGTTAGACATTTGATACGATAGACATTTGAGATTGAAGAGCCATCCG
AGATTGAAGAGCCATCCAAGATTGAAGAGACATTCACTTTCAGGAAACAG
CAAACCGTGAGACTGTGGCCTGATATGTTGTGAATGTAATTGACATGGTT
CAAGAATTACTATCGGTTCAAGGACAattaaagaaaagaagaaaagaaag
cagATTGATACTTTTACCTTTAGACTATCAATAAACTAACTAAATAATAG
CTGTGGAGGAGCTTGGAATTATACAAGTGAAATTGTACATTGTTTGTTTT
ATGGTTTCATTGTTGGAGTTATTTATATTGAAGTCGTGTTATATTGTTTT
ATGGTTAAACGTTAC
Run BLAST on NCBI

transcript from alignment at sc0000167:329803..330517

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013445 ID=TCONS_00013445|Name=TCONS_00013445|organism=Clytia hemisphaerica|type=transcript|length=715bp|location=Sequence derived from alignment at sc0000167:329803..330517 (Clytia hemisphaerica)
GTAACGTTTAACCATAAAACAATATAACACGACTTCAATATAAATAACTC
CAACAATGAAACCATAAAACAAACAATGTACAATTTCACTTGTATAATTC
CAAGCTCCTCCACAGCTATTATTTAGTTAGTTTATTGATAGTCTAAAGGT
AAAAGTATCAATctgctttcttttcttcttttctttaatTGTCCTTGAAC
CGATAGTAATTCTTGAACCATGTCAATTACATTCACAACATATCAGGCCA
CAGTCTCACGGTTTGCTGTTTCCTGAAAGTGAATGTCTCTTCAATCTTGG
ATGGCTCTTCAATCTCGGATGGCTCTTCAATCTCAAATGTCTATCGTATC
AAATGTCTAACACTTATAGCGTGATAACTTCTACCcgttgtttttttgtt
gttgttgttttttgtttttgttttaacacGAACAATGGTGATGTGGTTAT
TGTTCACCATTAATTACGACCGATGTCGAATCCCCTGATTCAAGCACTTC
CATTAGGGAAAAGGGGGATGCGCCTTTCTTTGTCAGAACGTTGGCCAGTT
GATGACTTCCGCCAATCCATTGCAGGATGATTTCGTCAGTATTGATCATT
TGACGTAGAGCATTTATCTCTACACGGAGTCGTCTGTCAGTCACAGCCTT
TGTTGAACCGGCACATTCAAAGAGTGATCTGCTATCAGTTAGGCAGACAA
CTTCTGGTGTCTTNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007515XLOC_007515Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013445-exon-sc0000167-1491911889:329803..330517TCONS_00013445-exon-sc0000167-1491911889:329803..330517Clytia hemisphaericaexon
TCONS_00013445-exon-sc0000167-1510915933:329803..330517TCONS_00013445-exon-sc0000167-1510915933:329803..330517Clytia hemisphaericaexon
TCONS_00013445-exon-sc0000167-1575043694:329803..330517TCONS_00013445-exon-sc0000167-1575043694:329803..330517Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000167supercontigsc0000167:329803..330517 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.838524	0.789065	0.91161	1.78494	1.83326	1.58688	2.65731	3.16948	0.88167	1.07541	1.44698	1.27649	1.53321	1.62207	0.963005	0.973989	1.26751	0.795671	0.0813589	0.935919	2.08109	2.52324	0.56274	1.24862	1.77535	1.88116	1.81046	0.701757	1.35233	0.442763
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00013445 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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