TCONS_00013442 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013442
Unique NameTCONS_00013442
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length321

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013442 ID=TCONS_00013442|Name=TCONS_00013442|organism=Clytia hemisphaerica|type=transcript|length=321bp
TATGGATTCCCACTGGCGACACTGAGCGACTTAGACGGTTAAAATGCCGT
AAAAGTTATACAAACCAAAAAAGATAAAGATTATCGATGTATTTGAGttt
attgtttaaaattatGATTATGATGTTTAAATTCGTTTAGAATGCTTACG
TGTATTTGTGTTAAAATCTATATAACATGTAATTAGTGTGGTGTGTTGGT
TCTGTTTGTGTATTACCGTCAATTTAGGGTTGTTTTTTACGAGAGGTGAA
CTCTGAGGTGGTTTTCCTGGTCTGCAATTTGTTTCCAGATTTGTATAAAA
CCACGCAATGACTTCTGaatt
Run BLAST on NCBI

transcript from alignment at sc0000167:235153..235473

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013442 ID=TCONS_00013442|Name=TCONS_00013442|organism=Clytia hemisphaerica|type=transcript|length=321bp|location=Sequence derived from alignment at sc0000167:235153..235473 (Clytia hemisphaerica)
aattCAGAAGTCATTGCGTGGTTTTATACAAATCTGGAAACAAATTGCAG
ACCAGGAAAACCACCTCAGAGTTCACCTCTCGTAAAAAACAACCCTAAAT
TGACGGTAATACACAAACAGAACCAACACACCACACTAATTACATGTTAT
ATAGATTTTAACACAAATACACGTAAGCATTCTAAACGAATTTAAACATC
ATAATCataattttaaacaataaaCTCAAATACATCGATAATCTTTATCT
TTTTTGGTTTGTATAACTTTTACGGCATTTTAACCGTCTAAGTCGCTCAG
TGTCGCCAGTGGGAATCCATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007512XLOC_007512Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013442-exon-sc0000167-1491911889:235153..235473TCONS_00013442-exon-sc0000167-1491911889:235153..235473Clytia hemisphaericaexon
TCONS_00013442-exon-sc0000167-1510915933:235153..235473TCONS_00013442-exon-sc0000167-1510915933:235153..235473Clytia hemisphaericaexon
TCONS_00013442-exon-sc0000167-1575043694:235153..235473TCONS_00013442-exon-sc0000167-1575043694:235153..235473Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000167supercontigsc0000167:235153..235473 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	2.98991	1.68762	0.407209	0.762447	1.06761	1.32241	0.320892	0.843766	2.10648	0.875041	0	2.12308	0.713308	1.21853	0	0.352325	0.612468	0.448111	0.726317	0.660327	0	1.21398	0	0.463499	0.351547	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00013442 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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