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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013440 ID=TCONS_00013440|Name=TCONS_00013440|organism=Clytia hemisphaerica|type=transcript|length=3522bp
CGTCTTAATATCAagtagaaaatattttattttaaaattctaaatattAC
TTTGATAAATCAATCTCTAAGTTTTTATAAATCAtgtctaaataaaaaaa
ctacgatagattctccataactcgaacacgcacacGGAACTATGtatatt
tcgagttatggaggttggTTTATTATAAGGCATTGCTAAACGAAGGGaca
ataaaacttgttcgagttataagaggttcgagttatggagactctgtATT
TGAAAACAATGACCGATATAATCGTTCTTCAAGTTGGAATTTAAGACTTT
GCTTATATGGCAAGACATCGAAAGCCTGAGTGAGTATTGAACGCTCTATA
GACCAGATAAACTGTCTCATTTCCCATTGTTTTTATTAGTCATATACCCA
GCAAAAATAGTTGTTTGCGTTCAAAGACCTAGAGTTTTGCCGTTTTACGG
TTCTTGGTGTGATGAAAATGCTGTTGATTTagatcattttgatttgaatt
aaatgaaattaaatataaaatttaaatCCATTCATAAACctatgaaaatg
taaaaaatgatacaaaagTTTAATTGACTTCACAGTAGCATATAACGGGT
ATAGGAAAGTCAGCTTGCTAGGGCAGATGTCTATGATATTTGcgaaattc
tttaatacttcACCAGAAGATATATTTGAGTTTTCCGACTCATATTAGGA
AGCTTTTTGGAAGACCTACCTTACTACCTTTTGAACCGAACATTTCTGAT
TAAAAATAGATTCAAATAATAGTCCAGCTAAAAAACACACGAGTCTGATT
GGCTGAAAGGGCACTTTTGAGGACTAGTGTTGTTACCTAATCCTCTTGAA
CAACATGAATTACGAGATGGTCGAATGTGTGATACAGTCAAAccaataaa
caaaataaaacccaAAATACTACTAATcatcataaaatatttcaaaacaa
tctTCAATAAGAACCACCGAGCAGATTCAAGATATCCAGCACGAATGAGG
CAACCGTTTACAACAGCCAAAAAAAGGAATTAGTATACTGAAATACCATA
CCATCACAAGGGCATGGTATCTCCTAACCTATTTGTGTTTATATATTCCA
TATGACCAgtactcttctgtgcttaattgtaggggggtgtagaataagca
gggggttggTACTCTGGAAGAAATCCATAAAATGGGGAAGAGGGTCAATA
TtaagtgattttggggtgattttcccaaaaccCATAGGAAAGtgaaggtt
ttggcactttttcagTCTtcttcaggaaaatttcataagtCAGGGGGGGG
GgagttgtcattattttttctgaaagatattTTCCATTTATCTTGGCGAC
TTTTTGAATAAACACGACGATAAGAATGTCAAGGAGGAGGTGAAGGTCTA
TGGAGGTAAGCTCCGGCTGTGAAAACGTCTTCTACACGATTTTTGAacga
actatataagagcataaggcttcgatggtcaaaatattgagaacaagtta
agaacattgtaaggctTTGTGGCTCTTAGACACTCAATTTCTtagaaatt
acacaaaaatattcacaaaatggtgaaaatgtagaacatttttaggctta
aaaatcatAAAGTTACAAACACACgagggcttcaaaaattttggatgttt
tatttCTACATCGGGTTCCACACCGAACCTAAGTTCAAGAAATTATACGC
CAACCACAAGTCATCATAAAGTCACAAGTCAAAATAAACTGAACTTTCCA
AGGAGATTTGGAGATTAAAACGAAAGAATCGTTCACTAAAGATTACTTGG
AAGACAGTCCAGAAAATGTCCACCGTTCAATATCGTGCTTCGCTGGAATG
TTCACTCTGCCTTagtgaaaaattagaaattgccACACTCGACCAACCCG
AGAAACTGTTAAATTCAAGGAATGAACTGATCTCGAAATGTCGACATGGA
AATAAGTTCACCCTCAAACTCCACGACACCTGAAATGACGTCAATTAATT
TTTACAGAGCACAATATATTTTTGTGACCAtgccatggcgttctaaatct
aaggCCTAGCAAACATGAATTGATGTCAAAATCTTTCATGAGAGGATGCA
AACCCAATTAAAATAAAAGTTGAAGAATGAAGGTTTGCGTCAGAGAAATG
ACAGCTTTTTAAAGGATTGTCAAAACATTCCGCTATTCGGATTACcgtcc
aaaaagaaaaaaatacattgAGAGACAGAGATGGATAAAGTCAATCCCTT
GTCTGACAGAAGAGATGGCAGATCAAATGAAACAAACACAAGTGATTTGC
CGAAAACACTGGCCAGACGTGATCACTTTCAAGAAAGGTGCGTAAAAGTT
AGTGCAAACTGAATTTCTAAAACAATTTTTGTCGCAAAATATCCAGAAGA
ATGATGGTCAGATCTTATACGGCtgtatgaaattgaaaatatcgCTAATC
TCAGCGGCGTCCTTGGCTTGTGAAAGCTGATCGAGGTTGCCGTCTCGTTT
attgaaagaaacaaaaagaatgGACTTGGCAAAAAGAGGTAGAACAGATC
CAGGAAATGCTCACAGCAGAAGATGAATCTGCTCAGGTGAAGTCTAGCAA
GAATTTTTTCGATTCGAAATCGAAAGTTCTTTCAGATATAAGTCTTTTGT
GAATGCAAGAGACTATATCCTTACCTCTTTATGCATGGATAACACATCTA
GAAGTGGAGCATTGGCAAACATGACATTGCACGAATTTAAAAATGGATGG
GTGGATGGTGATTTGTACAATATTGACGTTGTGGATCACAAAACGTTCGA
TACGTCTGGTCCGTGTGTCATTTCTTTGACTGCTGAGTTGTACAAAGCGG
CAAAATTTTACATAAGGTACATTTTATCATACCATATGTATAATTATTTT
GGTGCATCCATTCAAATTAgggaaatttctttaaaatttattttctcttA
TTTACTAAAACGAGTTTGGAGTAGAGGGAGCTGAGCGAGCCATGACTACA
CCTTGACACCCTAGTCTGGGAATCCCtgttatgatttcttttttgaatac
TAATGCCgatttttatatactgatggttTGGGCAATCACTTTGAATCCCC
TCCTTGATTGACAGCTGATAATTATCATCCAACCAATGgcattttttgtt
ttcgttttatTTTTCACACGTTTACTActgtgaaaagcacaggtcaaaat
catatattgacgctgtgccgacgaatcgagattctattcatcgcgcaatc
aacaaagacaaaagtaaccatggtgaccatccaagatcttggatgaagtt
caaagttgatatttttattcccgtcgttgaaaacacaacaaaaaatatca
tcaatgctttttaaaaagagtcagtgatagagaatcatatcataaagtct
gtctattattttgattcaattaaaagtgatatttccataattaatagttt
agtaattactgttatacatttgggaatcatgtaaaagatttctttcgaaa
gaaactcacttcgattacactt Run BLAST on NCBI protein sequence of TCONS_00013440-protein >TCONS_00013440-protein ID=TCONS_00013440-protein|Name=TCONS_00013440-protein|organism=Clytia hemisphaerica|type=polypeptide|length=99bp
MDNTSRSGALANMTLHEFKNGWVDGDLYNIDVVDHKTFDTSGPCVISLTA
ELYKAAKFYIRYILSYHMYNYFGASIQIREISLKFIFSYLLKRVWSRGS Run BLAST on NCBI transcript from alignment at sc0000167:121664..125185 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00013440 ID=TCONS_00013440|Name=TCONS_00013440|organism=Clytia hemisphaerica|type=transcript|length=3522bp|location=Sequence derived from alignment at sc0000167:121664..125185 (Clytia hemisphaerica)
aagtgtaatcgaagtgagtttctttcgaaagaaatcttttacatgattcc
caaatgtataacagtaattactaaactattaattatggaaatatcacttt
taattgaatcaaaataatagacagactttatgatatgattctctatcact
gactctttttaaaaagcattgatgatattttttgttgtgttttcaacgac
gggaataaaaatatcaactttgaacttcatccaagatcttggatggtcac
catggttacttttgtctttgttgattgcgcgatgaatagaatctcgattc
gtcggcacagcgtcaatatatgattttgacctgtgcttttcacagTAGTA
AACGTGTGAAAAataaaacgaaaacaaaaaatgcCATTGGTTGGATGATA
ATTATCAGCTGTCAATCAAGGAGGGGATTCAAAGTGATTGCCCAaaccat
cagtatataaaaatcGGCATTAgtattcaaaaaagaaatcataacaGGGA
TTCCCAGACTAGGGTGTCAAGGTGTAGTCATGGCTCGCTCAGCTCCCTCT
ACTCCAAACTCGTTTTAGTAAATaagagaaaataaattttaaagaaattt
cccTAATTTGAATGGATGCACCAAAATAATTATACATATGGTATGATAAA
ATGTACCTTATGTAAAATTTTGCCGCTTTGTACAACTCAGCAGTCAAAGA
AATGACACACGGACCAGACGTATCGAACGTTTTGTGATCCACAACGTCAA
TATTGTACAAATCACCATCCACCCATCCATTTTTAAATTCGTGCAATGTC
ATGTTTGCCAATGCTCCACTTCTAGATGTGTTATCCATGCATAAAGAGGT
AAGGATATAGTCTCTTGCATTCACAAAAGACTTATATCTGAAAGAACTTT
CGATTTCGAATCGAAAAAATTCTTGCTAGACTTCACCTGAGCAGATTCAT
CTTCTGCTGTGAGCATTTCCTGGATCTGTTCTACCTCTTTTTGCCAAGTC
cattctttttgtttctttcaatAAACGAGACGGCAACCTCGATCAGCTTT
CACAAGCCAAGGACGCCGCTGAGATTAGcgatattttcaatttcatacaG
CCGTATAAGATCTGACCATCATTCTTCTGGATATTTTGCGACAAAAATTG
TTTTAGAAATTCAGTTTGCACTAACTTTTACGCACCTTTCTTGAAAGTGA
TCACGTCTGGCCAGTGTTTTCGGCAAATCACTTGTGTTTGTTTCATTTGA
TCTGCCATCTCTTCTGTCAGACAAGGGATTGACTTTATCCATCTCTGTCT
CTcaatgtatttttttctttttggacgGTAATCCGAATAGCGGAATGTTT
TGACAATCCTTTAAAAAGCTGTCATTTCTCTGACGCAAACCTTCATTCTT
CAACTTTTATTTTAATTGGGTTTGCATCCTCTCATGAAAGATTTTGACAT
CAATTCATGTTTGCTAGGccttagatttagaacgccatggcaTGGTCACA
AAAATATATTGTGCTCTGTAAAAATTAATTGACGTCATTTCAGGTGTCGT
GGAGTTTGAGGGTGAACTTATTTCCATGTCGACATTTCGAGATCAGTTCA
TTCCTTGAATTTAACAGTTTCTCGGGTTGGTCGAGTGTggcaatttctaa
tttttcactAAGGCAGAGTGAACATTCCAGCGAAGCACGATATTGAACGG
TGGACATTTTCTGGACTGTCTTCCAAGTAATCTTTAGTGAACGATTCTTT
CGTTTTAATCTCCAAATCTCCTTGGAAAGTTCAGTTTATTTTGACTTGTG
ACTTTATGATGACTTGTGGTTGGCGTATAATTTCTTGAACTTAGGTTCGG
TGTGGAACCCGATGTAGaaataaaacatccaaaatttttgaagccctcGT
GTGTTTGTAACTTTatgatttttaagcctaaaaatgttctacattttcac
cattttgtgaatatttttgtgtaatttctaAGAAATTGAGTGTCTAAGAG
CCACAAagccttacaatgttcttaacttgttctcaatattttgaccatcg
aagccttatgctcttatatagttcgtTCAAAAATCGTGTAGAAGACGTTT
TCACAGCCGGAGCTTACCTCCATAGACCTTCACCTCCTCCTTGACATTCT
TATCGTCGTGTTTATTCAAAAAGTCGCCAAGATAAATGGAAaatatcttt
cagaaaaaataatgacaactcCCCCCCCCCTGacttatgaaattttcctg
aagaAGActgaaaaagtgccaaaaccttcaCTTTCCTATGggttttggga
aaatcaccccaaaatcacttaATATTGACCCTCTTCCCCATTTTATGGAT
TTCTTCCAGAGTAccaaccccctgcttattctacacccccctacaattaa
gcacagaagagtacTGGTCATATGGAATATATAAACACAAATAGGTTAGG
AGATACCATGCCCTTGTGATGGTATGGTATTTCAGTATACTAATTCCTTT
TTTTGGCTGTTGTAAACGGTTGCCTCATTCGTGCTGGATATCTTGAATCT
GCTCGGTGGTTCTTATTGAagattgttttgaaatattttatgatgATTAG
TAGTATTTtgggttttattttgtttattggTTTGACTGTATCACACATTC
GACCATCTCGTAATTCATGTTGTTCAAGAGGATTAGGTAACAACACTAGT
CCTCAAAAGTGCCCTTTCAGCCAATCAGACTCGTGTGTTTTTTAGCTGGA
CTATTATTTGAATCTATTTTTAATCAGAAATGTTCGGTTCAAAAGGTAGT
AAGGTAGGTCTTCCAAAAAGCTTCCTAATATGAGTCGGAAAACTCAAATA
TATCTTCTGGTgaagtattaaagaatttcgCAAATATCATAGACATCTGC
CCTAGCAAGCTGACTTTCCTATACCCGTTATATGCTACTGTGAAGTCAAT
TAAActtttgtatcattttttacattttcatagGTTTATGAATGGattta
aattttatatttaatttcatttaattcaaatcaaaatgatctAAATCAAC
AGCATTTTCATCACACCAAGAACCGTAAAACGGCAAAACTCTAGGTCTTT
GAACGCAAACAACTATTTTTGCTGGGTATATGACTAATAAAAACAATGGG
AAATGAGACAGTTTATCTGGTCTATAGAGCGTTCAATACTCACTCAGGCT
TTCGATGTCTTGCCATATAAGCAAAGTCTTAAATTCCAACTTGAAGAACG
ATTATATCGGTCATTGTTTTCAAATacagagtctccataactcgaacctc
ttataactcgaacaagttttattgtCCCTTCGTTTAGCAATGCCTTATAA
TAAAccaacctccataactcgaaatataCATAGTTCCgtgtgcgtgttcg
agttatggagaatctatcgtagtttttttatttagacaTGATTTATAAAA
ACTTAGAGATTGATTTATCAAAGTaatatttagaattttaaaataaaata
ttttctactTGATATTAAGACG Coding sequence (CDS) from alignment at sc0000167:121664..125185 >TCONS_00013440 ID=TCONS_00013440|Name=TCONS_00013440|organism=Clytia hemisphaerica|type=CDS|length=300bp|location=Sequence derived from alignment at sc0000167:121664..125185 (Clytia hemisphaerica)
TCAGCTCCCTCTACTCCAAACTCGTTTTAGTAAATaagagaaaataaatt
ttaaagaaatttcccTAATTTGAATGGATGCACCAAAATAATTATACATA
TGGTATGATAAAATGTACCTTATGTAAAATTTTGCCGCTTTGTACAACTC
AGCAGTCAAAGAAATGACACACGGACCAGACGTATCGAACGTTTTGTGAT
CCACAACGTCAATATTGTACAAATCACCATCCACCCATCCATTTTTAAAT
TCGTGCAATGTCATGTTTGCCAATGCTCCACTTCTAGATGTGTTATCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00013440-exon-sc0000167-1491911889:121664..125185 | TCONS_00013440-exon-sc0000167-1491911889:121664..125185 | Clytia hemisphaerica | exon |
| TCONS_00013440-exon-sc0000167-1510915933:121664..125185 | TCONS_00013440-exon-sc0000167-1510915933:121664..125185 | Clytia hemisphaerica | exon |
| TCONS_00013440-exon-sc0000167-1575043694:121664..125185 | TCONS_00013440-exon-sc0000167-1575043694:121664..125185 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000167 | supercontig | sc0000167:121664..125185 . |
Blast
The following BLAST results are available for this feature:
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