|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013436 ID=TCONS_00013436|Name=TCONS_00013436|organism=Clytia hemisphaerica|type=transcript|length=2191bp
GAAACTGATAATTATTGTATTTTAGCAAAGAAACTACGGCACAGTCGCCA
GTAGAAAAACGACAAAGATGATCTGACTGGCGGTGTCATTGACGTTGAAA
TTATATTGTGCTGCAAGGGTGtaagaaattaaatttgatttattacaaTT
ACAATTTTTGACAACCAAGTCATCAAAGAATCAGTACAAAAAACAATAAA
TCCTAATCTCTTGGAATTCTTTGCTGGTTCGACCTTTACAGTAAAAATAA
ACTGGAGATGATGGtcaaaaagtgaggttttcaatTGCAACCACATTATG
GCCCACAGCTTTAACATTATTGTGGCTGCATAAAGATGAAAAGAACCATC
TAAGTGAGGAAGAGTTGAGCTTTCCAAATAAGTGGCTCATTCTTAAAACG
AATCGTCTTATAATTAGCTATTAAGGACCAAAGTAGGGGCAGGTTTTGCG
GCTGCATGTTACTGTGGCTCACTCAAcgggttggcttatatgtgctgtcc
tgatttaatatttatcttcaatatttttaaccgtttttcttgaaattggt
agtttaaggtctgataaagatacttatgggctaaaaatgtggcttcaatc
actaatttatcaatttatacattccaggttgggttttgtttttgaaacat
gaATACTTGCAAAGCCTAATGCAAAACAAACACAACacagtgttatttta
agaaaaagtgtacattttgtggctgcaaataccattttttgtacATATAA
CCTTGAGCTGTTGCTTAGTATTAGTTGGCATTTTTAGGTTTGGcttatgt
gctgtcctgctttaaaagactttaaaagatttttttaacccTTCAGACTG
ATAAAGATActttatgggtttaatttgtggctgcagggttttcaatgggc
ttaaaatgtGGACCACAATAAGCTCTCTCCACAAGCTGAACGAATCCAAT
GAAAACTTGACCACCTTTATTGAATAACCAACAACAATGATGCCTTCCCA
CAACTTCCTAAACCCAAACATCTAGTCATCTTCCAAACAGCTACTTAAGT
AATGTCACCCGACTTTCACATTTTGCAACCCAAACCACCTAAAAGAGTCA
TCGATCCCCGACGGATAACTCACTGTACTATTGATAACTCCAATCCCAAA
TACAACaggacatgccataacttacccgaggcGCAAACCATTTATCGCAA
ACCCAGCGACCGATCCCAACTACTTCATTACCATCATGACACGTTAGTCA
CAGAAACGGAatgcagtgaaggggggagataATATTATAGAATGGAAGTT
GCTGAGGGTGTTTCCTACCACAAAGGTCATTATTTAGAGGGATGATCTGA
CAATAGAAAAGGACGACTTTTCAAACTCTCAAGCAAAGAAGTATTTTTCT
TCAAGGAGAATGTTGTCTATCCATTTGTCACATTTGAGAAAACCGACAAA
GGTTATTTTTTGAGTAATGAAGAATACTAAGATATTCTCCTATAtataca
aaaaaacaaactttaatcATAACTAATAACATTTTATGTTGTCATTGTTC
AATAGGCAGTGGGTTTTGGTTAATATTTGTTGCAGCCACATATAGTGCCC
CTGAAAATTAATTTACTGTTTACacgtttttcaattttcatcatGGTTTT
ATagacaaaaaatgtaaaagatttcaGTATATACTTTTTAGTATAAGTAT
TTGTTAAAATTTATCTAGAAGTGTTGCAGCCACAAAAAGTGCACTTGAAA
CTAAGCAAACCTTTTAAGTAATGCTCGATTGagtgtttgtaatttttgat
atCCCTAGATTTGATCAATTTATTTAAGtattcttgacaagtattaaatg
acttcaatgaaagCATATACGAAAAATATCGTCAACTTTGAGCTGCAATT
CTAGCCCAATGATTGACCCAATacattttataagcattgcgcttataagc
ataaccaggctcatatatggcaaaaattttaagcatatgctaaacaTTAC
CTTGAGCCTTCATAATCAGAATTCGTTTCTTTTTGACTGGAACTAAAcgg
attttcgaaatttatctaaaattttgcttaggatataagcatccctcaaa
gcatttttcagctttgtaaatctctcaatctaagcatttccgagccagct
tttgggtttttgtatgcttataaaaaagattttttgtggat Run BLAST on NCBI transcript from alignment at sc0000167:109515..111705 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00013436 ID=TCONS_00013436|Name=TCONS_00013436|organism=Clytia hemisphaerica|type=transcript|length=2191bp|location=Sequence derived from alignment at sc0000167:109515..111705 (Clytia hemisphaerica)
atccacaaaaaatcttttttataagcatacaaaaacccaaaagctggctc
ggaaatgcttagattgagagatttacaaagctgaaaaatgctttgaggga
tgcttatatcctaagcaaaattttagataaatttcgaaaatccgTTTAGT
TCCAGTCAAAAAGAAACGAATTCTGATTATGAAGGCTCAAGGTAAtgttt
agcatatgcttaaaatttttgccatatatgagcctggttatgcttataag
cgcaatgcttataaaatgtATTGGGTCAATCATTGGGCTAGAATTGCAGC
TCAAAGTTGACGATATTTTTCGTATATGctttcattgaagtcatttaata
cttgtcaagaataCTTAAATAAATTGATCAAATCTAGGGatatcaaaaat
tacaaacactCAATCGAGCATTACTTAAAAGGTTTGCTTAGTTTCAAGTG
CACTTTTTGTGGCTGCAACACTTCTAGATAAATTTTAACAAATACTTATA
CTAAAAAGTATATACtgaaatcttttacattttttgtctATAAAACCatg
atgaaaattgaaaaacgtGTAAACAGTAAATTAATTTTCAGGGGCACTAT
ATGTGGCTGCAACAAATATTAACCAAAACCCACTGCCTATTGAACAATGA
CAACATAAAATGTTATTAGTTATgattaaagtttgtttttttgtataTAT
AGGAGAATATCTTAGTATTCTTCATTACTCAAAAAATAACCTTTGTCGGT
TTTCTCAAATGTGACAAATGGATAGACAACATTCTCCTTGAAGAAAAATA
CTTCTTTGCTTGAGAGTTTGAAAAGTCGTCCTTTTCTATTGTCAGATCAT
CCCTCTAAATAATGACCTTTGTGGTAGGAAACACCCTCAGCAACTTCCAT
TCTATAATATtatctccccccttcactgcatTCCGTTTCTGTGACTAACG
TGTCATGATGGTAATGAAGTAGTTGGGATCGGTCGCTGGGTTTGCGATAA
ATGGTTTGCgcctcgggtaagttatggcatgtcctGTTGTATTTGGGATT
GGAGTTATCAATAGTACAGTGAGTTATCCGTCGGGGATCGATGACTCTTT
TAGGTGGTTTGGGTTGCAAAATGTGAAAGTCGGGTGACATTACTTAAGTA
GCTGTTTGGAAGATGACTAGATGTTTGGGTTTAGGAAGTTGTGGGAAGGC
ATCATTGTTGTTGGTTATTCAATAAAGGTGGTCAAGTTTTCATTGGATTC
GTTCAGCTTGTGGAGAGAGCTTATTGTGGTCCacattttaagcccattga
aaaccctgcagccacaaattaaacccataaagTATCTTTATCAGTCTGAA
gggttaaaaaaatcttttaaagtcttttaaagcaggacagcacataagCC
AAACCTAAAAATGCCAACTAATACTAAGCAACAGCTCAAGGTTATATgta
caaaaaatggtatttgcagccacaaaatgtacactttttcttaaaataac
actgtGTTGTGTTTGTTTTGCATTAGGCTTTGCAAGTATtcatgtttcaa
aaacaaaacccaacctggaatgtataaattgataaattagtgattgaagc
cacatttttagcccataagtatctttatcagaccttaaactaccaatttc
aagaaaaacggttaaaaatattgaagataaatattaaatcaggacagcac
atataagccaacccgTTGAGTGAGCCACAGTAACATGCAGCCGCAAAACC
TGCCCCTACTTTGGTCCTTAATAGCTAATTATAAGACGATTCGTTTTAAG
AATGAGCCACTTATTTGGAAAGCTCAACTCTTCCTCACTTAGATGGTTCT
TTTCATCTTTATGCAGCCACAATAATGTTAAAGCTGTGGGCCATAATGTG
GTTGCAattgaaaacctcactttttgaCCATCATCTCCAGTTTATTTTTA
CTGTAAAGGTCGAACCAGCAAAGAATTCCAAGAGATTAGGATTTATTGTT
TTTTGTACTGATTCTTTGATGACTTGGTTGTCAAAAATTGTAAttgtaat
aaatcaaatttaatttcttaCACCCTTGCAGCACAATATAATTTCAACGT
CAATGACACCGCCAGTCAGATCATCTTTGTCGTTTTTCTACTGGCGACTG
TGCCGTAGTTTCTTTGCTAAAATACAATAATTATCAGTTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00013436-exon-sc0000167-1491911889:109515..111705 | TCONS_00013436-exon-sc0000167-1491911889:109515..111705 | Clytia hemisphaerica | exon |
| TCONS_00013436-exon-sc0000167-1510915933:109515..111705 | TCONS_00013436-exon-sc0000167-1510915933:109515..111705 | Clytia hemisphaerica | exon |
| TCONS_00013436-exon-sc0000167-1575043694:109515..111705 | TCONS_00013436-exon-sc0000167-1575043694:109515..111705 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000167 | supercontig | sc0000167:109515..111705 . |
Blast
The following BLAST results are available for this feature:
|
