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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013300 ID=TCONS_00013300|Name=TCONS_00013300|organism=Clytia hemisphaerica|type=transcript|length=2371bpRun BLAST on NCBI protein sequence of TCONS_00013300-protein >TCONS_00013300-protein ID=TCONS_00013300-protein|Name=TCONS_00013300-protein|organism=Clytia hemisphaerica|type=polypeptide|length=345bp MSIETVLGPIEPKKLGKTLTHEHIRLSYTCCFAKPPMEHHMKRINENFIKRun BLAST on NCBI transcript from alignment at sc0000164:259918..278733- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00013300 ID=TCONS_00013300|Name=TCONS_00013300|organism=Clytia hemisphaerica|type=transcript|length=18816bp|location=Sequence derived from alignment at sc0000164:259918..278733- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000164:259918..278733- >TCONS_00013300 ID=TCONS_00013300|Name=TCONS_00013300|organism=Clytia hemisphaerica|type=CDS|length=8304bp|location=Sequence derived from alignment at sc0000164:259918..278733- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00013300 vs. Swiss-Prot (Human)
Match: PTER (Phosphotriesterase-related protein OS=Homo sapiens GN=PTER PE=1 SV=1) HSP 1 Score: 331.643 bits (849), Expect = 1.169e-105 Identity = 169/345 (48.99%), Postives = 244/345 (70.72%), Query Frame = 1
Query: 175 IETVLGPIEPKKLGKTLTHEHIRLSYTCCFAKPPMEHHMKRINENFIKLENLGFVRQYPYSHIYNLAFRDETLEDMIAEVKLFKEMGGDSIVEVTTEGIEPDYEFLREVSKATGVNIICCTGYYLGHTLSDEVKNASVDDLVKNMVQDLKVGRNG--IKAGVIGEVGLQYPMADVERKSLIASGKAQAEMKCPLIIHPGRAAEAPYEIIDVLREAGADISKTVISHLDRTLRSCESLLKFAAYSDCYLEFDLFGIEVSHYQFGDEIDFPSDAQRVEWIKALVDGGYGDRVVIAHDIHTRHRLSRYGGHGYGHILENVVPKMLARGIAQDAIDKMLIENPKRWLTW 1203
++TVLG +EP KLG+TLTHEH+ +++ CC+ PP + I++ I ++NL ++++ YSH NL ET E + E+ FK GG ++VE TT GI D + L+ +++ TGV+II G+Y+ T S E + SV+ L ++ ++ G +G IK G+IGE+G +P+ + ERK L A+ AQA++ CP+IIHPGR++ AP++II +L+EAGADISKTV+SHLDRT+ + LL+FA CYLE+DLFG E+ HYQ G +ID P D +R+ ++ LV+ G DR+++AHDIHT+ RL +YGGHGY HIL NVVPKML RGI ++ +DK+LIENPK+WLT+
Sbjct: 8 VQTVLGLVEPSKLGRTLTHEHLAMTFDCCYCPPPPCQ--EAISKEPIVMKNLYWIQKNAYSHKENLQLNQET-EAIKEELLYFKANGGGALVENTTTGISRDTQTLKRLAEETGVHIISGAGFYVDATHSSETRAMSVEQLTDVLMNEILHGADGTSIKCGIIGEIGCSWPLTESERKVLQATAHAQAQLGCPVIIHPGRSSRAPFQIIRILQEAGADISKTVMSHLDRTILDKKELLEFAQLG-CYLEYDLFGTELLHYQLGPDIDMPDDNKRIRRVRLLVEEGCEDRILVAHDIHTKTRLMKYGGHGYSHILTNVVPKMLLRGITENVLDKILIENPKQWLTF 348 The following BLAST results are available for this feature:
BLAST of TCONS_00013300 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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