TCONS_00013281 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013281
Unique NameTCONS_00013281
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length742

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013281 ID=TCONS_00013281|Name=TCONS_00013281|organism=Clytia hemisphaerica|type=transcript|length=742bp
GCATTTGGGAAGGCAACGAAGAAGCTGCCTGCTGAACTTAATGCTGTTTT
AAGCCAGAAGATAATTCAGATTTCACCATACTCCAGTCAGGTTTCAAATG
AAGTGAAACCTTTCTAAGTAATAAAGgatttttaaaAGAGAAGAATTTTT
AACGAAAATGGTTTCTTTACCTTGTGGTTTAACAACATCCCTTTACCAAA
ATGAAGCACCCAGACTTGTTATTGTTCGACAACCTAAGAAAcgCGGCTAC
CGATTTCGTTATCGCTCTGAAGGAGAGACACATGGTGGGATCCCAGGAGA
ACCAGATCCTCACAGTGGAAACAAAAAGTTCTACCCTACGGTTCAGttAA
AAGGTCATCATGGTGCAGCCAAGATTGTGGTTACCTTGGTAACATCAGAT
GACAGACATTTTCTTCATGCTCATTCAATGATTGTCAACAAGGAATTGAA
GAAgggattttgtatttttgatatgcCTGCAAACAGTAATATACTGGAGT
AAGTTGTCCTACCTTTTCAAATAGCATTTGGTTTAAAAAGCCACGTCGAA
ATAAGTTACATTGGGcctttccagaaatagtccgtgcccccccctctgtt
gaggatatcggatatccagggggttaacgattatgttcaaaagtggatat
ccagggggttaaatatctacaagggagcggatatccagggggtaaagtgt
cttttcaagtaaaaaatacgatatccaggggtaagcttCTTT
Run BLAST on NCBI

protein sequence of TCONS_00013281-protein

>TCONS_00013281-protein ID=TCONS_00013281-protein|Name=TCONS_00013281-protein|organism=Clytia hemisphaerica|type=polypeptide|length=114bp
MVSLPCGLTTSLYQNEAPRLVIVRQPKKRGYRFRYRSEGETHGGIPGEPD
PHSGNKKFYPTVQLKGHHGAAKIVVTLVTSDDRHFLHAHSMIVNKELKKG
FCIFDMPANSNILE
Run BLAST on NCBI

transcript from alignment at sc0000164:279180..289900+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013281 ID=TCONS_00013281|Name=TCONS_00013281|organism=Clytia hemisphaerica|type=transcript|length=10721bp|location=Sequence derived from alignment at sc0000164:279180..289900+ (Clytia hemisphaerica)
GCATTTGGGAAGGCAACGAAGAAGCTGCCTGCTGAACTTAATGCTGTTTT
AAGCCAGAAGATAATTCAGATTTCACCATACTCCAGTCAGGTTTCAAATG
AAGTGAAACCTTTCTAAGTAATAAAGGTAAGAAAAATTCCAGTTTAACTT
CAcatattcttgttttttttttaaatgtcatgTCAGAAAATCAGACCAGT
CAGCAGAAAGAAGGATGCTTCTtataggggtcactcacatatcgattttt
cCTGCAACTAACGTCATTTTGACGCTATCTGAAGAACCCCCCAACCCCCT
TTCTTAGCGCCATTTACATAAATAtaccaaaaatcgatgaaagtATTTTT
TCTTCTCTATTACAGATATTGATATTCCAGCCACATTGATTTTTGTGCTT
CGTTTCGCACGGTTTTAAAACAAGTGGTTTTGACTTATGACTTTCACATT
TTTTTGTCCCCCAGACAAACAGCTCTTTGTTTTGTCATATTACGGTCTGT
CAGCGCTCAGCGCGGCCCTTGTATATCAAAATACGGCCTATCTATTTTTT
ATTGCGGTATCTCTGTTTTTATGATTAGGGAGATGATAACATATTCCTAC
AAACGTAACAAAAGGGTATTGAATATCATCTCTGTTATATTTTATGCGTT
TGAATTAAGATGGCAGGTGTAGCAAAGGATGGAATACAAAATATTACAGG
TTTGAAAATCGATATTCTGTTGAAATTTCTTTGCGTCATAGGCTCTGACC
CCCCACCCCCCTCGCGTCATGACCTTGTcaacgcaccggacttaacgaac
accggacacgcgaaagtctggtgtaaaatgagaatttttttaccaccaga
caatttctacaccggacttaaggaagtcggatgtccggtgtcggagaagg
atatttttcccaccggacatgaccagtccagtgcgtccggtgtttcttaa
ttgtttgtttcataaatgtccggtgtccaaaattccctgtatgcaacacc
ggactgacaccggacttattgcgccCGGTGTAGCGAAAAGATACTTTTTT
CCACCAGActaatacaccggacagtccggtgcgtcggcagggtcctcttg
CGTCACGATGACGTTAGATGCAGGAaacatcgatatgtgagtgacccctt
aggCGCGCACGCTGAGGCTTTTatctggtaacttgcatcagtggcggcta
acttgtattatatataaaattttactATTTCCTATTCCTAGAAAATAAGG
ACCGAGAGCCTTTTAAGAAGACTCTCTGTCTATCTtgcatttttctttga
aatagcCAGTCCACAAAACTTTTCAATCGAACAATTCTCATTTTTAATTA
CTTGATCGAGTAAAGTCAAAGAAATTCTACCACGTTTGCgatttttatca
tcattaaacaTTAACAATTTACTCAAGCGACCAGAAGGCATTCTCACAAC
ATGAGCTGCGtagttttgttgttgttgtttgataAAAACACTAACATCTG
AGGTACCACATAGTGTGAAGCTGGTTGTTGCTAATGACGTATCCAAAATC
ATTATTGACCTCATCTACATAACGAAATACACCTCTGATCATTCTCCTCA
AAAACATTCTATAGGTGACATCGAGGCGGTCGTACTGGAGAGACGTTAAG
TTCCAGTTCTGACATGAATGCATTAACCGGCTCCTGACGAAACTGTTGAG
GAAGAAGATACGAACACGTAGGTTGATGTGGAAGTTTTGTAGCAGGTTAG
ACATTTGGGCGAATTTTACAATTGCACGTTGAATTCGTTGATTGAGTTCT
GCTTCCCCTGTGTTTGGTTGAAGGTGATTAAGGACAGCACCAAGATATTT
GAattctttgacatttttgagttgcTCTTCACGAAGAGATATGATAGAAT
CGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNGAAAGTTAAATCCAAAAGCTCTGTTGCA
GCACTGATACCCTCGAGTGAAAGTAGAAAGAGGACGATGTCATCAGCATA
TCCACACCAAGAGAGAGTCGCTTCGCCCCAAGTTCTTATACCACTTGCTC
TCATCTCTCATCTTTCTGCACGAGAGTGTGCTTGTGGGTTAACTCAATAT
TTGTGTTTGAAGAACTTGATTTGGTTATCATCTTTACATTTTTCGATAAA
TACTCTCATAACGAAGTCTAGatataaattgaacaaaaagggACTTTCGG
GCCCCCCTTGACGCACACCGGAAGTCGTTTTGAAAGATATCATAGCATCG
TCGTAGGTGAGGGTGGTATTTTCGTACAAAGTTTCAAGAATTTCGAAAGT
TCGAGGGATGGATCTATCGGGGAAGCATAGTTTTATACTTTCAAAGAGCC
AGCTTTGTGGTATGTGGTCGAAAGTGGCACTTAGatcaacaaaaagaaga
aacgtAGGTTCAgactttttgtttgaaatttggtGAACTCGTTTAACCGT
GTAGATACCGTCTGTTTTTCCACGGTCCTTTCTAAAGCCATTTTGCTCAT
CCAATAACTGATTCTTGTACCAGGGTCTGAGTCGTTCAAGAATTATATTA
ATGGCTAATTGGCAGACGGTTGATCCTATACTAATTCCGCGGTATTTTGT
AGGGTCTTTCTTTGAACCTTTCCCTTTCCACAATGTCTTAAGTCTAGAGT
TTCCCCACGCACCAGGGATGTCGAGATTATTCCACAGGTTGAACATCATT
CTCTGTATCACCTGAAGCATGATTGGTTCGGTACATCTTTTCAAGAGCTC
CGGTTCAATGTCGTTgatgctttgttttttttaagtttttgtaaGTGTTT
CTGTATTTCTTCAACGGTTGGGGGTGCATCATTTAATTCAGAATTCAATG
AGATATTCTGTAGAGCGTTGACGAAAATTGGAAGATTCAGAAATTTCTCA
GGTGTTTGGGTTGTAGAAGGGTCTTCTGGGCTAAAATGTGTTTTAAAATG
GTTCAAAAGTTTGTCCGGAGGATGATCCAATGACTGGTTTTAAGGTGGTT
TCTTGCTTTTTGGCACAGGCAAATAATTGATCAAGTTCTCTGTTAATGGA
CAATTGGTTTATTTTCTCGGCTTCATCTCTATAAAATTGATTTCGTAATT
GTCGAgctctaaagtctattcacgataagtgtgcactcttttttctttta
cctataacttttgaaggaattcttcaatttttataaatttggtattgttg
gagagatatttgtgagtgaaacaatttgaaataaaaaaatttcaaaagaa
ttctaaaaatgaagatgaaaatgaagaagaaaaaaatgaagatcttgtag
aaaagtgctataactttcattttcactggagagattttttgatctttgga
cgtcatcactgtgaagaaatttcactaaaatatttattcaatacaaagtt
aGGATACAAaattaataagtgattgaccccaaaaaacagcagaaaacagc
aaaaaacagcgtttttagacgtcaatcagcttataactttgtttgatatc
ttttgactgtatgattatttttgagaatttttttcacagtgataacgttc
gataatcaaggtttcacttcagtgaaaatgatagttatagcacttttcta
caagatcttcatttttttattcttcattttcatcttcatttttagaatta
ttttaaagatttttttattcaaaattgttccactaactaatatctttcca
acaataccaaatttataaagattgaagaattccttcaaaagttataagta
aatgaaaaaagagtgcacacttatcgtgaatagactttagttctGATTTT
CTTGTGAACGGCTTTCACTTTTTTCGGACAGGCATTTCTCATTACCAATA
GTTCTTTCTGTTGATATAGTTCCTTAAGTTTTACATCCTCATGCCACGGC
TGGTGTNNNNNNNNNNNTCTGATTTTCTTACGAACGGCTTTCACTTTTTT
CGGACAGGCATTTCTCATTACCAATAGTTCTTTCTGTTGATATAGTTCCT
TAAGTTTTACATCCTCATGCCACGGCTGGTGTAGTTTTCGGGCAACTATT
TTCGGAATCGTTTCGTCTGCAGCTTCTTGAATAGAAGTAATAAAGTGTTC
GTTGAGTTGAGTATTCGATTGCATTTCTGGCTGAATATACTCAAGCTTGA
TGGAGAGACTCCTTTTAAAGTTTTGTTCCGTCTCAGCACGATTCAGGGAT
TTGAAATCAAAACGTTTCTTTGGTGATTTCATTCGATGTTTCTTATAGCG
TGACATTTTGGTGCATGGAGTAGATAAGTTTGCGATCACCAAACGATGGT
CACTATCAAAGTCATATGAGTAGTATACTCAACAATTCGTACAATACTGT
CTCAACCAGCTACATTACAACAGAGAATAAAATCATATACCTTTCTGGTG
TTCCCATCTGGTGAGTGCCAAGTATATCTACGACAAAGTTTATGAGTGAA
CCATGTATTCAAGACTGTAAGTTTGTACGATTGGAAGAGATCATGGAAAC
GTTCGCCGTTATCGTTGATGACCAAGTCTTCGATTACACTGTTCTCTCTC
AAGGATGAATTGTAGAGTGATGCCGAGGTAGTAGCATTGATATCCCCAAG
GCATATCACTTTTTGATTTGCATTTGTGGTAATGATTTGCTTTTTGAGAG
TGCTATAGAACAGGTTTTTGGTAGTTATAGCACTCTCTTCTGTCGGGGCA
TAACAGTTTATAACTCTCAGAGAGCAGCCCGATACGATAATAGAGTCgta
aaatgaatgacctggctggtcattaaaataaaaagttagatGAAAACAAA
TCTGATTGACGAAATTTGTGGGTTGTAAAATATATCTCCTAATCATAAAA
GTGATGTCATGCACAATTATGTTTAAAGCCAGCCAGTAGAGTCCCTTGCC
CAGTTGGCAACCAGTCTTGTTGGCAACCCAACGTCTTTCGaaaatgcgaa
aatgaaaaatgacgaaattctcgttttctaattgtctttttaatctgcca
tgaagtgttataaaagaATCTGatttacagaaaaaatatttcatctatat
GCATCAAAAAAGatatgaaatttgaaattttataaaaattacctgttttt
tccttttaaatCTTGAATTATGTTTCCTCTagatactgcaattgcagtat
ataaAAGCTATGTAAAAGCGATGTTtgtaccgcaattgcagtaaaaaatt
actactgcaattgagggatttccttGCCTGCtctctggtcattaaaatgt
tGTATTAAAGTGGAGGCATTGCAGTGTTGAATCGAACAATTAAGTTATGT
CACGTGCTATcttttgatgattggttgaataaCTGCAATCTTTATGCAAT
AACTCAGTATTTTTGaagcagcgattcagacctcttgatgcaaattaccc
gatctcacggcaGGAATTACAGACAAATTTTCTAGGCCTtgattttccta
ggggttttgaACATGCTCTCCAATTTCCAAGGAGGTTATTGAAGGTGAAG
GTTTCCTTCCTTCAGTCCTTGGGGTTATATATCACAAACAGGCATCATTA
CTCAAATTCAAACTGCTAAAAATCAGCCCCAAAATAGACGCACTCCACTA
CGTGCTCCACTGCTGTGTCAAAAGTTGTAGGGGGagtaaacaaatttttt
ttacttgtggTCTGCAAGGGCTCCACAGGTTTTTGGCTTGACTTTTGACA
ACAATATGTGTTTTAGATTAAAAATTGGTAAAGTATGATAAATATCGTAA
GATCGATGGTCTAATtttgacatccctcttctaatttaaACATCCATCCT
TAGAGAttggaataataggaaggtcagaattattgataaattttttccCT
CTAATTGCtaagaaaaaaattccgtcagcggttctgaccttcctattata
CCTATCTCTAGAGAATGGTCTTGAAATgagaagagggatgtcaacattag
accaacttatgatAGTAAATAAGCAAGCAAGAATTTGAGAGGATTCTACA
GAGTTTAGAAAAGCTTAAAAACAACTTTGACCAAGGAAACACAGGATTGT
TTACCTTTCCAAGCCAAAGGGTGTAGAGCAACAAAAATGTGTGCACAGTT
CTTTCCTGAATTCTGGAAAAGGTTTATAGAGTGAGGTGGTGTTAGTCAAA
CAttagtttgaacaaaaatcgaaCCGAATGAAAAAGAACCAAACACAATT
GAAtaatcagtgtagctggaacttTGATATTCAAGGACTATGATGTGACC
agctttttagtgatttttacTTCGCTAACCCAAATCCCTCAACCTTTTTA
CCCCAAGGAAGATCAAAAGTTTTTTGGCATTCCGAAACAAATGTGATGtt
aaaactttttcatctttaCAGAATCGATTCTCAACCTCaaaatggatttt
tttctgGCATTCCTCCTTCTAAGAATATTGATCTCTTTTGTTTCCCACTT
GAGTGCGTTAGAAAAAAATGTAGCTCCAGGGCACTAAGTTTCTGCCTTAT
TTTGCACCCACAATTGAATGATATAAATACTGGGTGTGACAATGATATAA
AACTATCTCATTTTGTaatgtgtttattttctgaaagatacaaatagtat
attaaATATCATTTACTTacttaaaaagtcaaaatttatttcatagtAAA
AGCTTTTCGGCTACGTCATTGTCAGTACAAACATAGAAtggtaaaaaatc
acaaatttgtctattaaaaatgttgaaaaaatggccaaatatctacaaat
aaaaaaaatttcatccatAAAACTTTTCAGAAATGTCAATATTTAATATA
CCCTAAAGAATAATGTATTTACGTCTTTATCGATTCCTTTGTATAGCACT
TTTATAGCACTTTTATAAAGTCCTATACAAAGAGTTTTTTGTCCTAATTT
TTGAGCCACTTCAGATTTTTCTGGTTGGTCTTTTTGGAGTCAACATTCTT
TGCAATTTCTAACTATACATCCAGTGACttaatattttgaagatttcttt
ttgacaaaaatttttgaagatttttattgTATCTATTTGaataaacataa
atatttgcactgttttatatctttatttttattttcaaatggtTTAATAT
GTAGTGATAATGAACATTCATGTTTTAATGCTActtaaatacacgttttt
ttttaataaggaaccttaacttggctccgaccctggagttccttattttg
ccagagagtttcagcttcaaagttccttaACGAGTTCCTTAGTTACTTAG
CTGTTAAGTTTGGATTTTCTAAGTGTGTAGCTTCTTTAtcagcatttttt
ttttttgacatattGAAAGGTGTTTCAGCAATATTTTCCGTCTTTTTATT
TAGGTTGTTGTAAATGTGTGCAAGTTCAAATTGAACTCTTGCTGTTtctt
aacttgattttttattctcagcctgagcagttccttaacaattccttatt
tctcagaccattttcagcctcaagttccttataaacgtgttccttataaa
aaaaaaacgtgtatatagaCAGATAGATTCAAGGAATAATACCTTAATTC
TATTAATTTTTGCGCCCCTTTTATTTTAGCGTCTCTAATTTTCGCACCTT
TAATTTTTGCGTATCTTGTAATGACTATAGGTAAAGAAGGTGATAAACAC
GTGAAGCTTGATTTTACGTGCCAGAGGCATATTTAACATGAATCAAGGTC
CCATTTTATTAAAAGAGCCCCAAGATGAGATTTCTACACATTCAGAACGT
TTACTAATTCGCGCACACTTTAATTTTTCCGTGGCCAATTTCGCGTGCCT
TTTATTTTTGCGCACGTATTCTGCGCGAAAATAAAAGGCGCACAGAAATT
AATGGAATTAAGGTATAATATTTATCATTCATAAttcttttttaggattt
ttaaaAGAGAAGAATTTTTAACGAAAATGGTTTCTTTACCTTGTGGTTTA
ACAACATCCCTTTACCAAAATGAAGGTAAGTGTAATTCCGGGAGGGGCAA
GGTTTTAGATAAAAAGCTAAGTAAATTCTGGCATAGCTTTAATTAAGCCA
AAGTCTGAAACCTACcagaaatttaatttggcaagtGAAGATTATTGTTT
ATTCCAGATTCTAGCAAGGATTTGATTTGATGATTTAAAATGGACAGAAC
TGGATGATATGAAATTTACAAGAAAGCGATCAAAGTCtcataaaattatc
ttttcaataaattttatcTAATCCCCCAAACTTTCCAAGAAAGAAATTAA
CCTAGAATCCAAGTATTATTTTTATCTTCAATCTCTGTGTAATTTTGCCA
AGTGAATGgtacacccctttctcatagacccactgggacctcttcccact
ggaaaaattggtcgAAATATCGTTCCCAGTCGAAAATTATACTTCAATTT
TTGTccacactgaaaataatcaaataaatacatcctcactgcaaaatgtt
ATGCAAATTTCCCCATCCCCAATGAATTTTCTGCCTTGAATGAAAATAat
ggaattgaaatccccagctataaaaaatattggaatattagtccccatcg
agtttcagtccgttattttcacccccactggctgagaaaatcctaccggg
tctgtgagaagggggtgtaatggTTACTGCAACCTTGGTgagaaatttaa
tttgtttattGTTTGGATGCtcacaaatttgtatttttctcTCATTCAGC
ACCCAGACTTGTTATTGTTCGACAACCTAAGAAAGTAagtttattttgat
gaaaatcgaTATTTTCTCTAGACAAAGCTATCCTCATTTTATCCATAGAC
CAAATATAAGAACAATCATAAAATGGATATCCGTGTTAGATTTAATGTGG
ATAAGCCTGTTTTGATTCTTTTGATGTgtcataaattttgagattttaag
cAAAGTCTGAAtgcaatctcgtacccagagccacttgcaccttattttga
ttttattgatggACGTTAGTACAATCATGAgttcaaaagcaaaaaaaggg
aCTGGACTCGAGTTTGGTTTGAACGTCTCTGGCGTTGTAGATAAGGTCTT
ACAAAATGTCATATAataaaatgggctcttccagaaaaaacccatggggg
gtggaggatataacaatttttagtgatttacNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNcggacaagcatctgctgacccccc
ggacacaccaaattacccccggacagagcaaatttacaccccggacaagg
caaattttgatgattttttgctacctcccggacaatatatcctccacccc
ccatgtaaaatttttttctgtaagaGCCCAATGTATCTCCTTTATACccc
ttttcaaccgtagccgccaattgccacgcgggcatctttttgtcagtttt
accaccctaaaatcgtcccagtctttttttcgcacctaaaaaagacaata
gaaagaagaggattggatcgagtttagggtggtaaattaaatgatAAAGT
GGCACGCACCTGACCGCGAGACTACGATCGAAAATGTGTATTATGACCAT
CTTCCAAatatatacacatttttttattttctagcgCGGCTACCGATTTC
GTTATCGCTCTGAAGGAGAGACACATGGTGGGATCCCAGGAGAACCAGAT
CCTCACAGTGGAAACAAAAAGTTCTACCCTACGGTTCAGGTGTGACACAA
TTATTTTTGTTGAAGAATACGTCATcattaaactttaaactttagTAAAA
CTTAAAAAGACTTGAAGCTGGCgttatatcaattttttgttGTCACAATC
TTTGGCGTTTCACCTTTGTCCtacttaaaatatttctttcttttgaaata
ttggGATTTTTTTGGTGTTTGTTGTGTCTATGATCTAATAGTTAGTGAAA
TAGAATTAAAAGAAATTCCAGAGcatttttttccatatttttttaattta
ttattattatttttttctgttttagttAAAAGGTCATCATGGTGCAGCCA
AGATTGTGGTTACCTTGGTAACATCAGATGACAGACATTTTCTTCATGCT
CATTCAATGATTGTCAACAAGGAATTGAAGAAgggattttgtatttttga
tatgcCTGCAAACAGTAATATACTGGAGTAAGTTGTCCTACCTTTTCAAA
TAGCATTTGGTTTAAAAAGCCACGTCGAAATAAGTTACATTGGGcctttc
cagaaatagtccgtgcccccccctctgttgaggatatcggatatccaggg
ggttaacgattatgttcaaaagtggatatccagggggttaaatatctaca
agggagcggatatccagggggtaaagtgtcttttcaagtaaaaaatacga
tatccaggggtaagcttCTTT

Coding sequence (CDS) from alignment at sc0000164:279180..289900+

>TCONS_00013281 ID=TCONS_00013281|Name=TCONS_00013281|organism=Clytia hemisphaerica|type=CDS|length=1380bp|location=Sequence derived from alignment at sc0000164:279180..289900+ (Clytia hemisphaerica)
ATGGTTTCTTTACCTTGTGGTTTAACAACATCCCTTTACCAAAATGAAGC
ACCCAGACTTGTTATTGTTCGACAACCTAAGAAAcgCGGCTACCGATTTC
GTTATCGCTCTGAAGGAGAGACACATGGTGGGATCCCAGGAGAACCAGAT
CCTCACAGTGGAAACAAAAAGTTCTACCCTACGGTTCAGttAAAAGGTCA
TCATGGTGCAGCCAAGATTGTGGTTACCTTGGTAACATCAGATGACAGAC
ATTTTCTTCATGCTCATTCAATGATTGTCAACAAGGAATTGAAGAAggga
ttttgtatttttgatatgcCTGCAAACAGTAATATACTGGAGTAAATGGT
TTCTTTACCTTGTGGTTTAACAACATCCCTTTACCAAAATGAAGCACCCA
GACTTGTTATTGTTCGACAACCTAAGAAAcgCGGCTACCGATTTCGTTAT
CGCTCTGAAGGAGAGACACATGGTGGGATCCCAGGAGAACCAGATCCTCA
CAGTGGAAACAAAAAGTTCTACCCTACGGTTCAGttAAAAGGTCATCATG
GTGCAGCCAAGATTGTGGTTACCTTGGTAACATCAGATGACAGACATTTT
CTTCATGCTCATTCAATGATTGTCAACAAGGAATTGAAGAAgggattttg
tatttttgatatgcCTGCAAACAGTAATATACTGGAGTAAATGGTTTCTT
TACCTTGTGGTTTAACAACATCCCTTTACCAAAATGAAGCACCCAGACTT
GTTATTGTTCGACAACCTAAGAAAcgCGGCTACCGATTTCGTTATCGCTC
TGAAGGAGAGACACATGGTGGGATCCCAGGAGAACCAGATCCTCACAGTG
GAAACAAAAAGTTCTACCCTACGGTTCAGttAAAAGGTCATCATGGTGCA
GCCAAGATTGTGGTTACCTTGGTAACATCAGATGACAGACATTTTCTTCA
TGCTCATTCAATGATTGTCAACAAGGAATTGAAGAAgggattttgtattt
ttgatatgcCTGCAAACAGTAATATACTGGAGTAAATGGTTTCTTTACCT
TGTGGTTTAACAACATCCCTTTACCAAAATGAAGCACCCAGACTTGTTAT
TGTTCGACAACCTAAGAAAcgCGGCTACCGATTTCGTTATCGCTCTGAAG
GAGAGACACATGGTGGGATCCCAGGAGAACCAGATCCTCACAGTGGAAAC
AAAAAGTTCTACCCTACGGTTCAGttAAAAGGTCATCATGGTGCAGCCAA
GATTGTGGTTACCTTGGTAACATCAGATGACAGACATTTTCTTCATGCTC
ATTCAATGATTGTCAACAAGGAATTGAAGAAgggattttgtatttttgat
atgcCTGCAAACAGTAATATACTGGAGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007420XLOC_007420Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013281-exon-sc0000164-1491911889:279180..279305TCONS_00013281-exon-sc0000164-1491911889:279180..279305Clytia hemisphaericaexon
TCONS_00013281-exon-sc0000164-1510915933:279180..279305TCONS_00013281-exon-sc0000164-1510915933:279180..279305Clytia hemisphaericaexon
TCONS_00013281-exon-sc0000164-1575043694:279180..279305TCONS_00013281-exon-sc0000164-1575043694:279180..279305Clytia hemisphaericaexon
TCONS_00013281-exon-sc0000164-1491911889:287275..287354TCONS_00013281-exon-sc0000164-1491911889:287275..287354Clytia hemisphaericaexon
TCONS_00013281-exon-sc0000164-1510915933:287275..287354TCONS_00013281-exon-sc0000164-1510915933:287275..287354Clytia hemisphaericaexon
TCONS_00013281-exon-sc0000164-1575043694:287275..287354TCONS_00013281-exon-sc0000164-1575043694:287275..287354Clytia hemisphaericaexon
TCONS_00013281-exon-sc0000164-1491911889:288079..288113TCONS_00013281-exon-sc0000164-1491911889:288079..288113Clytia hemisphaericaexon
TCONS_00013281-exon-sc0000164-1510915933:288079..288113TCONS_00013281-exon-sc0000164-1510915933:288079..288113Clytia hemisphaericaexon
TCONS_00013281-exon-sc0000164-1575043694:288079..288113TCONS_00013281-exon-sc0000164-1575043694:288079..288113Clytia hemisphaericaexon
TCONS_00013281-exon-sc0000164-1491911889:289114..289218TCONS_00013281-exon-sc0000164-1491911889:289114..289218Clytia hemisphaericaexon
TCONS_00013281-exon-sc0000164-1510915933:289114..289218TCONS_00013281-exon-sc0000164-1510915933:289114..289218Clytia hemisphaericaexon
TCONS_00013281-exon-sc0000164-1575043694:289114..289218TCONS_00013281-exon-sc0000164-1575043694:289114..289218Clytia hemisphaericaexon
TCONS_00013281-exon-sc0000164-1491911889:289505..289900TCONS_00013281-exon-sc0000164-1491911889:289505..289900Clytia hemisphaericaexon
TCONS_00013281-exon-sc0000164-1510915933:289505..289900TCONS_00013281-exon-sc0000164-1510915933:289505..289900Clytia hemisphaericaexon
TCONS_00013281-exon-sc0000164-1575043694:289505..289900TCONS_00013281-exon-sc0000164-1575043694:289505..289900Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013281-proteinTCONS_00013281-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000164supercontigsc0000164:279180..289900 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.44538	1.73555	2.46931	3.20451	8.32839	6.70663	7.6701	8.7144	6.06359	9.2478	6.69429	3.47412	8.18349	8.32021	6.55107	10.7415	5.51014	5.0142	7.20452	8.53588	6.41184	5.61936	4.80971	5.67536	10.9974	12.147	16.1445	14.1739	8.09526	9.06525
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011539RHD_DNA_bind_dom
IPR008967p53-like_TF_DNA-bd
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0003700transcription factor activity, sequence-specific DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0003677 DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
Blast
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BLAST of TCONS_00013281 vs. Swiss-Prot (Human)
Match: NFKB2 (Nuclear factor NF-kappa-B p100 subunit OS=Homo sapiens GN=NFKB2 PE=1 SV=4)

HSP 1 Score: 79.7221 bits (195), Expect = 1.098e-16
Identity = 46/103 (44.66%), Postives = 59/103 (57.28%), Query Frame = 2 
Query:  203 EAPRLVIVRQPKKRGYRFRYRSEGETHGGIPGEPDPHSGNKKFYPTVQLKGHHGAAKIVVTLVTSDDRHFLHAHSMIVNKELKKGFCIF-----DMPANSNIL 496
            + P LVIV QPK+RG+RFRY  EG +HGG+PG        +K YPTV++  + G AKI V LVT  D    HAHS++  +  + G C       DM A  N L
Sbjct:   36 DGPYLVIVEQPKQRGFRFRYGCEGPSHGGLPGASS--EKGRKTYPTVKICNYEGPAKIEVDLVTHSDPPRAHAHSLVGKQCSELGICAVSVGPKDMTAQFNNL 136
The following BLAST results are available for this feature:
BLAST of TCONS_00013281 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NFKB21.098e-1644.66Nuclear factor NF-kappa-B p100 subunit OS=Homo sap... [more]
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