TCONS_00013267 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013267
Unique NameTCONS_00013267
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length498

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013267 ID=TCONS_00013267|Name=TCONS_00013267|organism=Clytia hemisphaerica|type=transcript|length=498bp
AGCCCCAAAGAGTAAAGTATTTCAGGAGAAAGATATATCATTATATTAAA
AAATCGTAATGGCTAACTGTTTGGACACTACATCAATGGTATTTTTGATT
ATTTGTCTTTTTGGCAATCTAGCGCATTCGATGCCTATGAATGAGAAACA
TCATTTTAGTTCGAATCCCTTGGGAGGCCAATCAAAGCAAGAAGACGAAT
GTCTTCACACCGCTGAGATTAAATATTTCGAATGCGTTCGACGAATCAAT
GATGGCGTCATCACACATAATGGTAGCGCAACACGTGGCAAAATGGCAGT
CGGAGTTATGGCAGAAAGGAGAATCAGATTTGCATCATGTGTAAATAAGT
TCCAACATCAAAATAATGGATGTCGATATTAAAAAATTTATGGAACTTTA
TTATTTCATTAGCTGGCAGTTAAATTTATTGTGGCTTGGATCAAGAACCT
GCGTTCAAATATTTCCGAACAATGACCGAAAAAGACATTTGAATAAGA
Run BLAST on NCBI

protein sequence of TCONS_00013267-protein

>TCONS_00013267-protein ID=TCONS_00013267-protein|Name=TCONS_00013267-protein|organism=Clytia hemisphaerica|type=polypeptide|length=107bp
MANCLDTTSMVFLIICLFGNLAHSMPMNEKHHFSSNPLGGQSKQEDECLH
TAEIKYFECVRRINDGVITHNGSATRGKMAVGVMAERRIRFASCVNKFQH
QNNGCRY
Run BLAST on NCBI

transcript from alignment at sc0000163:333251..333748

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013267 ID=TCONS_00013267|Name=TCONS_00013267|organism=Clytia hemisphaerica|type=transcript|length=498bp|location=Sequence derived from alignment at sc0000163:333251..333748 (Clytia hemisphaerica)
TCTTATTCAAATGTCTTTTTCGGTCATTGTTCGGAAATATTTGAACGCAG
GTTCTTGATCCAAGCCACAATAAATTTAACTGCCAGCTAATGAAATAATA
AAGTTCCATAAATTTTTTAATATCGACATCCATTATTTTGATGTTGGAAC
TTATTTACACATGATGCAAATCTGATTCTCCTTTCTGCCATAACTCCGAC
TGCCATTTTGCCACGTGTTGCGCTACCATTATGTGTGATGACGCCATCAT
TGATTCGTCGAACGCATTCGAAATATTTAATCTCAGCGGTGTGAAGACAT
TCGTCTTCTTGCTTTGATTGGCCTCCCAAGGGATTCGAACTAAAATGATG
TTTCTCATTCATAGGCATCGAATGCGCTAGATTGCCAAAAAGACAAATAA
TCAAAAATACCATTGATGTAGTGTCCAAACAGTTAGCCATTACGATTTTT
TAATATAATGATATATCTTTCTCCTGAAATACTTTACTCTTTGGGGCT

Coding sequence (CDS) from alignment at sc0000163:333251..333748

>TCONS_00013267 ID=TCONS_00013267|Name=TCONS_00013267|organism=Clytia hemisphaerica|type=CDS|length=324bp|location=Sequence derived from alignment at sc0000163:333251..333748 (Clytia hemisphaerica)
TTAATATCGACATCCATTATTTTGATGTTGGAACTTATTTACACATGATG
CAAATCTGATTCTCCTTTCTGCCATAACTCCGACTGCCATTTTGCCACGT
GTTGCGCTACCATTATGTGTGATGACGCCATCATTGATTCGTCGAACGCA
TTCGAAATATTTAATCTCAGCGGTGTGAAGACATTCGTCTTCTTGCTTTG
ATTGGCCTCCCAAGGGATTCGAACTAAAATGATGTTTCTCATTCATAGGC
ATCGAATGCGCTAGATTGCCAAAAAGACAAATAATCAAAAATACCATTGA
TGTAGTGTCCAAACAGTTAGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007408XLOC_007408Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013267-proteinTCONS_00013267-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013267-exon-sc0000163-1491911889:333251..333748TCONS_00013267-exon-sc0000163-1491911889:333251..333748Clytia hemisphaericaexon
TCONS_00013267-exon-sc0000163-1510915933:333251..333748TCONS_00013267-exon-sc0000163-1510915933:333251..333748Clytia hemisphaericaexon
TCONS_00013267-exon-sc0000163-1575043694:333251..333748TCONS_00013267-exon-sc0000163-1575043694:333251..333748Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000163supercontigsc0000163:333251..333748 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.12276	0.119711	0	0	0.165549	0	0.473483	1.0343	0.413791	0.896958	0.621863	0	35.1886	16.5337	11.0138	5.76012	6.4509	8.21773	0.260994	0.136556	0.118692	0	0	0	0	0.11763	0.168329	0.179645	0.953781	0.971752
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00013267 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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