TCONS_00013241 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00013241
Unique Name	TCONS_00013241
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	769

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000163:104421..107606-

transcript sequence

>TCONS_00013241 ID=TCONS_00013241|Name=TCONS_00013241|organism=Clytia hemisphaerica|type=transcript|length=769bp
GAACTGATGCTACTTGATGCTAAGCTGAAAGGACTAGCTGCACCAAGCAA
TCTATCTATGAACCAAACCTTAGAAGGACACTCTGATACCGTGAAAGTCA
TCACTTGGAATGAGAAACATCACAAACTAACAACAAGTGATCAAAAAGGA
TTGATCATTGTATGGATTCTCTACAAAGGTGCTTGGTATGAAGAAATGAT
AAACGATCGAAACAAATCAGTCGTTTGTGATATGAAATGGAATACTGAGG
GACAGAAAATCTGTATTGCTTACGAGGATGGTGCTATTATTATGGGATCT
GTTGATGGGAATCGTATTTGGGGTAAAGAATTGAAAGGAATCAAACTATC
CAAAGTTGAGTGGTCACCTGACAGCAAGATCATTCTATTTGGTACAAACA
CTGGTGAAGTGCACATTTATGATAATATTGGAAACTCTATTGGTGCAGTC
AGTCTACCATGTTTAGAAGGAGAAGTGTCTGGATATAATTTGGTCAGTGT
AGAATGGTATAATGGTAAAAGTGGTTATCTCGAAGAGAACTGTCCACAAC
TCGCCATCGCATATGATATAGGACGATGCCAAATCATGAGACACGAATTC
GATGATGAACCAGTGTTACTTAACATCACTATGACCATCGTCTCTCTCAA
ATGGAGTTGCAAAGGAGATGTTCTAGCCATTGCTGGTTCACAAAAAACTT
CCAGTCAAGATCGTGATGTTAACATTGTACAATTTTATAACCCTTTCGGT
CAACATTTGAGGACGCTGA

Run BLAST on NCBI

transcript from alignment at sc0000163:104421..107606-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00013241 ID=TCONS_00013241|Name=TCONS_00013241|organism=Clytia hemisphaerica|type=transcript|length=3186bp|location=Sequence derived from alignment at sc0000163:104421..107606- (Clytia hemisphaerica)
GAACTGATGCTACTTGATGCTAAGCTGAAAGGACTAGCTGCACCAAGCAA
TCTATCTATGAACCAAACCTTAGAAGGACACTCTGGTATGTTTAGTTTTT
TCTTTTTGAAAATGCCAGGCCATTGTCTTAATTTATGCACAATGTAAAGA
ACCCGCAAATTACAGGTTTGGACATTTTTTATTAAAAAATTTGAAAAATC
CCTTGGAAAATGAAAGAAACGTGCCCTAACCGCAAAACCACAAAAATTAT
CTCCTGAAAAAATTATTTTTCTGAATTATTTTTACTGTGAAAATTAGTTC
CCATTGAAATTAGTTCCCTTAGTATACTTTATTTGTTAAAGTTGGATGTT
GTAAATCAAGTTTGTATGTGTTATGAAGGAAATCATTGCATTATAAAGTA
GAAGTTTACACCCCCNTTGTAAATCAAGTTTGTATGTATGTAAATTATTG
CATTATAAAGTAGAAGTTTAGATCTTTTTTAGATAAAAGTTTAATTTTTT
GTTTTATTCAGATACCGTGAAAGTCATCACTTGGAATGAGAAACATCACA
AACTAACAACAAGTGATCAAAAAGGATTGATCATTGTATGGATTCTCTAC
AAAGGTGAAATGATGCTCATTACTCACTTTTGCTGAGCTCAGTTGAGCTT
CATACAAGTAACCTGATACTATGTCAGTATAAAAAACCCCGGTCTGGAAA
CTTATGGTTTCAACTTTTTGTTAAGCTTTTTCCTTTGATAATATCAAAAG
ATAACAATCAATTTGCTCAGTTCTTGATCATGTTACCAAGCCTTATGGAT
ATGAAAAATCTTTGAAGGCACTTGAAAATAAACAAGAATCTTATTTTACT
GGAACTTGGAATCAACAAAACACATGTCTATAAAATAGATAATTTGAAAA
GATTTTAAAACATATAAATGTATCAACCCTTACTTATTCTCTCCAAAGGT
GCTTGGTATGAAGAAATGATAAACGATCGAAACAAATCAGTCGTTTGTGA
TATGAAATGGAATACTGAGGGACAGAAAATCTGTATTGCTTACGAGGATG
GTGCTATTATTATGGGATCTGTTGATGGGAATCGTATTTGGGGTAAAGAA
TTGAAAGGAATCAAACTATCCAAAGTTGAGGTTTGTAGCCAAGAAACAGC
AAGAATTTGAAAAATTTTATGGGATTTTTAGGCTGATATCGATTGGAAGC
AAACTCAATTTTATCATACTATAAGGCTGGACTTAAAAAATTGTAGGTTT
GTCGTCACCCGACCGACCCTACCTCGAAACCTGCCGACCCAAAAAATTTT
ATTGCCATTTTAAAGAAGATTTTTTTTCCTTTAAAAACTTCAAACAATAA
AAAATCAAAACTCANCTTTCAGTGGTCACCTGACAGCAAGATCATTCTAT
TTGGTACAAACACTGGTGAAGTGCACATTTATGATAATATTGGAAACTCT
ATTGTATGTGCTTATTATATTTTTCCATCAGACCCATAAAGCTAACTATT
ATAGAAATATTAAAGAAGTCTCATCAATGGATTTCTTTTAGGCTGTTTTT
AGTTTTATTCTTAAATAAGTACTCTTAATGCCAAATGAATGCAAAATGAC
TAGTCACTAGAAGCCATCGAAGAGCAAAGAGTTTAATTTGCCGTACATCT
TGGTCCTTCCTTTATTGATTGGTAGTATAATCATGAAAATACTCCAATGA
CGTGTTTGTTTATCATATCTTTTTTACAGGGTGCAGTCAGTCTACCATGT
TTAGAAGGAGAAGTGTCTGGATATAATTTGGTCAGTGTAGAATGGTATGT
ATACAATCCCACAATACAATCTCTTTTGTCTAAATTATTTCGATTTTACA
ATTTTATGAAGAATAAAATATCTATATAAGCCTTGTTAANAAATCGCCAA
AATAAAAAAAAATTCCGACCGACCGACCCACCTCCAAAATCTAGGGTCGG
GTGACGGCAAACCAACAATTTTTTAAGCCCAGTCTAACCTTGTTTTCGGT
TAGTACTGTTCATAGAAATGACTTTTAAGCTCTAAGAGAGTCCTGTTGAT
TGCTTGCTATGAAATTCATTGATTTCATCTTGGCACTTGAAATTTGATGG
CTCAATATTTTGTTCCTAAAAATTATTTCTTTCCTGAAGACTCCCATTTC
TTGTAGGAGTCTGGAACAAAGGAAGGGGAGGACCCCATTTCCTTCTCTGG
ATTTCCTAACTTCCCATTGAGATGTATCAAGTGGCATCCAATTTTGTTTT
CTTAATCTTTCAGTGGTCACCTGACAGCAAGATCATTCTATTTGGTACAA
ACACTGGTGAAGTGCACATTTATGATAATATTGGAAACTCTATTGTATGT
GCTTATTATATTTTGCCATCAGACCCATAAAGCTAACTATTATAGAAATA
TTAAAGAAGTCTCATCAATGGATATCTTTTAGGCTGTTTTTAGTTTTATT
CTTAAATAAGTACTCCTAATGCCAAATGAATGCAGAATGACTAGTCACTA
GAAGCCATCGAAGAGCAAAGAGTTTAATTTGCCATACATCTTGGTCCTTC
CTTTATTGATTGGTAGTATAATCATGAAAATACTCCAATGACGTGTTTGT
TTATCATATCTTTTTTACAGGGTGCAGTCAGTCTACCATGTTTAGAAGGA
GAAGTGTCTGGATATAATTTGGTCAGTGTAGAATGGTATGTATACAATCC
CACAATACAATCTCTTTTGTCTAAATTATTTCGATTTTACAATTTTATGA
AGAATAAAATATCTAAATAAGCCTTATCACGTGGCAGCCATTGACTAGTC
TGTTATCTTGAATTTTCTTGCATCTCAATCAAGCACTATGATCTAATTCA
ATTGTAAAGGCAATCACCGCTTGTGTTCATGATCGAACAAAGTTCTTTCA
ACTTTTTTTTACAAACACAACAGGTATAATGGTAAAAGTGGTTATCTCGA
AGAGAACTGTCCACAACTCGCCATCGCATATGATATAGGACGATGCCAAA
TCATGAGACACGAATTCGATGATGAACCAGTGTTACTTAACATCACTATG
ACCATCGTCTCTCTCAAATGGAGTTGCAAAGGAGATGTTCTAGCCATTGC
TGGTTCACAAAAAACTTCCAGTCAAGATCGTGATGTTAACATTGTACAAT
TTTATAACCCTTTCGGTCAACATTTGAGGACGCTGA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_007394	XLOC_007394	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000163	supercontig	sc0000163:104421..107606 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0960181	0.345135	1.14234	1.04035	15.313	12.3269	10.2522	10.7804	7.01128	6.00027	4.224	7.97637	3.57371	3.66539	1.6428	1.80166	0.754056	2.72183	0	0.0833128	0.915189	0	0	0	5.13937	6.46241	0.00559371	0.0669916	0.00238726	0

Blast

[Close]

BLAST of TCONS_00013241 vs. Swiss-Prot (Human)
Match: WDR35 (WD repeat-containing protein 35 OS=Homo sapiens GN=WDR35 PE=1 SV=3)

HSP 1 Score: 351.673 bits (901), Expect = 4.924e-112
Identity = 161/251 (64.14%), Postives = 199/251 (79.28%), Query Frame = 1

Query:   16 DAKLKGLAAPSNLSMNQTLEGHSDTVKVITWNEKHHKLTTSDQKGLIIVWILYKGAWYEEMINDRNKSVVCDMKWNTEGQKICIAYEDGAIIMGSVDGNRIWGKELKGIKLSKVEWSPDSKIILFGTNTGEVHIYDNIGNSIGAVSLPCLEGEVSGYNLVSVEWYNGKSGYLEENCPQLAIAYDIGRCQIMRHEFDDEPVLLNITMTIVSLKWSCKGDVLAIAGSQKTSSQDRDVNIVQFYNPFGQHLRTL 768
            DAKL+GLAAPSNLSMNQTLEGHS +V+V+TWNE++ KLTTSD+ GLIIVW+LYKG+W EEMIN+RNKSVV  M WN +GQKICI YEDGA+I+GSVDGNRIWGK+LKGI+LS V WS DSK++LFG   GE+HIYDN GN +  + L CL       ++  + WY+G  GY+E +CP LA+ +D GRCQIMRHE D  PVL++  M +V ++W+  G VLA+AG QK + QD+DVNIVQFY PFG+HL TL
Sbjct:   49 DAKLRGLAAPSNLSMNQTLEGHSGSVQVVTWNEQYQKLTTSDENGLIIVWMLYKGSWIEEMINNRNKSVVRSMSWNADGQKICIVYEDGAVIVGSVDGNRIWGKDLKGIQLSHVTWSADSKVLLFGMANGEIHIYDNQGNFMIKMKLSCLVNVTGAISIAGIHWYHGTEGYVEPDCPCLAVCFDNGRCQIMRHENDQNPVLIDTGMYVVGIQWNHMGSVLAVAGFQKAAMQDKDVNIVQFYTPFGEHLGTL 299

The following BLAST results are available for this feature:

BLAST of TCONS_00013241 vs. Swiss-Prot (Human)

BLAST of TCONS_00013241 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
WDR35	4.924e-112	64.14	WD repeat-containing protein 35 OS=Homo sapiens GN...	[more]

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TCONS_00013241 (transcript) - C. hemisphaerica