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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013215 ID=TCONS_00013215|Name=TCONS_00013215|organism=Clytia hemisphaerica|type=transcript|length=1469bp
ttaaattaaaaagtgCCACACTGTATTTACATTCTATCATTTGACAACCA
TAATTTAGTTTTTTCCATTTATCActctttattgaaaatttgtgtaactt
tctttttgtattcttaatgaagaaaaaaaatccaattttacaAAATGGAA
CCAAGTATTGCAAGAAAAGGCATCAAGGATAGTGAAAAAGTGTATCAAAT
ATTCCAACAACTTTTATCTACTGTTGGAAAGGGAAATCTTATGTATGATA
AGAAGATAGACGCAGACCCTGCTTCTGTCCATGTGAAGTGtgaagaaaat
aacaaaaaagttgCTGAGATTCTTGAAANCCTGCTTCTGTCCATGTGAAG
TGtgaagaaaataacaaaaaagtcgCTGAGATTCTTGAAAGTCTAAAGAA
GGCACTTGCAGATACGAAAGAATGCTATCAACATTGCCAAAAAGAGATGG
CTACTGCCAAAATgCCTTCAATTGAGGATATTGCAAAAGGAAACACAAAA
AAAGAGCCTGCTGGTGAACCATCTGAGGAgtacaaaactttaaaaaaagt
aattttttcacTGACAAACTTTCCGTACAGGGTCTGAATTTTCACTCaat
gtctttaaaaatgttGTCAGTGACAATCGAATTGTGCTTTTGAGTTCTCA
AATAATAATATACATGGCACACTATCACATAATCATTCACACCAGTAGCT
AAGGGCAACTTAAAACCTGACATTATGAAAAAACCACCTGACAATAGCAC
TAGCCAGGCAAAAATTGAGCAAATTTTTATTGAAGCAATATATTGTGATA
CAGTCACCAGAAATGATTCTGTGTGCTGTTAAATTTGTATATCTTTCTTT
CTAGCAATTACAGGCCAAAAATGAAGATCTACGAGTCATCATTGATGAAG
TACGTCACATTTTCAGTGACATAAATCAGCTTAGTACAACGGTTCCTTAT
TGAGCATTTTTGAATGGTCTTTTTCCTCATACAACATTTTGTTGAGTGGT
GGTAACTGTGTTGACGTTGTGGAAGCTGTGATGGCTGAGCCTGATGATAC
GGTATTGGAGATGCGAACCAATCCATCACCTATGAATTACTTGTATAATT
AATGCAACACTAAGAAAATATTGACACAATTGTTTGTAAATCTTGCAAGT
TTATAAACAGATATTTTGATAAGTTAAATGGTTACGACTGAATTGTGAAG
TGTTGGATTGCATGtttcaaatattcttttattGATTGCTTGATAATATC
CAAGATATGGTGAACATAGCAGTGGTAATCACAATGATATTCATAGAGCA
GAATAATTGTAAGGCATTTGAGTTGGGAAGAAAATGTGAATTTATCTTTT
GTAATTATAAGGTGACGATAGAAATGATTATTGTCTTATGATTATTTTCT
ACTGCTCCCCAATGATTTCCTCAATTCTAATTCATACATAACACAAATGA
GTGACAAATAATTACAACA Run BLAST on NCBI transcript from alignment at sc0000163:416286..418272+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00013215 ID=TCONS_00013215|Name=TCONS_00013215|organism=Clytia hemisphaerica|type=transcript|length=1987bp|location=Sequence derived from alignment at sc0000163:416286..418272+ (Clytia hemisphaerica)
ttaaattaaaaagtgCCACACTGTATTTACATTCTATCATTTGACAACCA
TAATTTAGTTTTTTCCATTTATCActctttattgaaaatttgtgtaactt
tctttttgtattcttaatgaagaaaaaaaatccaattttacaAAATGGAA
CCAAGTATTGCAAGAAAAGGCATCAAGGATAGTGAAAAAGTGTATCAAAT
ATTCCAACAACTTTTATCTACTGTTGgtaagtttcaatttttttctttac
aattgATGtaagtttattttgatttgatcaaatttttattgaaaaaaaac
taagaaaagtAGTAAATGTACAGTGTTTTATTTCGAAGATCTATTAAACA
AATATTTGATACTATTTGAAACAATTTGCAAAAAATTAGTCCCATTAAAA
TACAAATCAATAAGTTGttgttattattaaaaaatttctgttggagtaat
tagttattcaaagaCCGTTGCATTTTCANTTGttgttattattaaaaaat
ttctgctggagtaattagttattcaaagaCTGTCGCATTTTCCCGAAAAC
TATATTTATTTAAAGGAAAGGGAAATCTTATGTATGATAAGAAGATAGAC
GCAGACCCTGCTTCTGTCCATGTGAAGTGtgaagaaaataacaaaaaagt
tgCTGAGATTCTTGAAANCCTGCTTCTGTCCATGTGAAGTGtgaagaaaa
taacaaaaaagtcgCTGAGATTCTTGAAAGTCTAAAGAAGGCACTTGCAG
ATACGAAAGAATGCTATCAACATTGCCAAAAAGAGATGGCTACTGCCAAA
ATggtattgtttatttttttagtcTTAAAAATATTGTAATATTAGCTGTC
CACCCTTCCATTTAGGTTTTATTAAACAAAATATTGATATCTAATATAAT
CTTATAGTATTCAACCCTTTCTCTAATTATTTTCACTTCTGACAGAAaga
taataatttttatttgataatcTTTGTTTTAGCCTTCAATTGAGGATATT
GCAAAAGGAAACACAAAAAAAGAGCCTGCTGGTGAACCATCTGAGGAgta
caaaactttaaaaaaagtaattttttcacTGACAAACTTTCCGTACAGGG
TCTGAATTTTCACTCaatgtctttaaaaatgttGTCAGTGACAATCGAAT
TGTGCTTTTGAGTTCTCAAATAATAATATACATGGCACACTATCACATAA
TCATTCACACCAGTAGCTAAGGGCAACTTAAAACCTGACATTATGAAAAA
ACCACCTGACAATAGCACTAGCCAGGCAAAAATTGAGCAAATTTTTATTG
AAGCAATATATTGTGATACAGTCACCAGAAATGATTCTGTGTGCTGTTAA
ATTTGTATATCTTTCTTTCTAGCAATTACAGGCCAAAAATGAAGATCTAC
GAGTCATCATTGATGAAGTACGTCACATTTTCAGTGACATAAATCAGCTT
AGTACAACGGTTCCTTATTGAGCATTTTTGAATGGTCTTTTTCCTCATAC
AACATTTTGTTGAGTGGTGGTAACTGTGTTGACGTTGTGGAAGCTGTGAT
GGCTGAGCCTGATGATACGGTATTGGAGATGCGAACCAATCCATCACCTA
TGAATTACTTGTATAATTAATGCAACACTAAGAAAATATTGACACAATTG
TTTGTAAATCTTGCAAGTTTATAAACAGATATTTTGATAAGTTAAATGGT
TACGACTGAATTGTGAAGTGTTGGATTGCATGtttcaaatattcttttat
tGATTGCTTGATAATATCCAAGATATGGTGAACATAGCAGTGGTAATCAC
AATGATATTCATAGAGCAGAATAATTGTAAGGCATTTGAGTTGGGAAGAA
AATGTGAATTTATCTTTTGTAATTATAAGGTGACGATAGAAATGATTATT
GTCTTATGATTATTTTCTACTGCTCCCCAATGATTTCCTCAATTCTAATT
CATACATAACACAAATGAGTGACAAATAATTACAACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00013215-exon-sc0000163-1491911889:416286..416511 | TCONS_00013215-exon-sc0000163-1491911889:416286..416511 | Clytia hemisphaerica | exon |
| TCONS_00013215-exon-sc0000163-1510915933:416286..416511 | TCONS_00013215-exon-sc0000163-1510915933:416286..416511 | Clytia hemisphaerica | exon |
| TCONS_00013215-exon-sc0000163-1575043694:416286..416511 | TCONS_00013215-exon-sc0000163-1575043694:416286..416511 | Clytia hemisphaerica | exon |
| TCONS_00013215-exon-sc0000163-1491911889:416851..417088 | TCONS_00013215-exon-sc0000163-1491911889:416851..417088 | Clytia hemisphaerica | exon |
| TCONS_00013215-exon-sc0000163-1510915933:416851..417088 | TCONS_00013215-exon-sc0000163-1510915933:416851..417088 | Clytia hemisphaerica | exon |
| TCONS_00013215-exon-sc0000163-1575043694:416851..417088 | TCONS_00013215-exon-sc0000163-1575043694:416851..417088 | Clytia hemisphaerica | exon |
| TCONS_00013215-exon-sc0000163-1491911889:417268..418272 | TCONS_00013215-exon-sc0000163-1491911889:417268..418272 | Clytia hemisphaerica | exon |
| TCONS_00013215-exon-sc0000163-1510915933:417268..418272 | TCONS_00013215-exon-sc0000163-1510915933:417268..418272 | Clytia hemisphaerica | exon |
| TCONS_00013215-exon-sc0000163-1575043694:417268..418272 | TCONS_00013215-exon-sc0000163-1575043694:417268..418272 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000163 | supercontig | sc0000163:416286..418272 + |
Blast
The following BLAST results are available for this feature:
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