|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013213 ID=TCONS_00013213|Name=TCONS_00013213|organism=Clytia hemisphaerica|type=transcript|length=1836bp
atttttaaaggaGAACCAAAATGGAACTCACTTCAGAGGCTtgtcaaaaa
gaaatcattgaaCGCTTGGAATTTTTGAAAGTTATAAAAGCACATACACA
GAATGAACAAATTATTGCAGAAGAGAATATTGAATTGATTAAAAGAGAAA
TCGACCAATCAGTAGATTTTCATCTTGAGAATTTGCAAAAGCGTGGAGCA
TGGCTAAAGCTACACGCAGAACACGTATACGGATTAATGCAAGAATCACT
TGCTCAAAAACAGGAACAAATCGAGATTGGTATCTCAAGCATAACAAGCG
TCCTTGAAGATAAAGATTCCTATAGATTATCGGAAGAGCAGGCTtgcaat
gaaatgaaaaacatccTTAATACAAGTTGGCCATCTGCAAGTGAAAATGc
TGTCTTAACGTTTTCTGCAAGCAACAGTGCTCTGAGCGAATCCATTTTGG
CGTACGGTAACATCGGTACCACCTTGAAAGATGAATCGGAAAGCTTTATC
CTTGCTGAAGATGATGATGGAATCGAAATTATACCCAAAGAACAAAATCT
ATTTCCAAGAGATTCTGTATCTGACTGGTTGTTGAACAAGAGCTCATCTC
CTGATGAAGTCTCTGAAGTTGCTGAAAAGGATAGCTATTCTGATTGGTTA
GTATGCAGTAAAAATGATCCAGCATTCATGAAAGTTGAACCTTCACCGTG
GCTTTTGCGGGAATGTGACACCGATTCTGGTCACTGGTCAGCATTCACCA
CTTCGACCAAGTCAGAACAACCCATTGAATATGCTTCCTTTCTCATCAAA
AATCTTCAGATAAGCAAAAAAGATGTAATTGACGATTTAGACAAGGATGA
AACTGACTTGAACACATTTTTACACAAATCCAGCAGTCCGTCTGATTCTA
CTCAAAATTACCAATATCCAAAACGCCAATTCCTCGAGCATTGGGATTTC
CTTAATGAGCAAGATTCATCAAAGTATCTCGTTGCAAAGAAAGATATCCC
TGCTGCAAAGCCCAAAGAGGAGGAAACGTGCCAATGGTTGTATCGCAAAG
ATGTTGATGAATGTCGCCAAGAGAAATGTACTGCTAATGGTTGTGATTTG
TTTGATAAGAATTGGTTGAGAACTGCCAGTGATTGGTGATGGTTTATCCA
TGTTTAATTGGATTTGAGTGTGCTATATAGAAACTGAGAGAGTTTTATAT
TGTTTATATGGAGGTGTAGATCTGGTTAGGTGAGAGACAGtatgattttt
tgtcaaaaaaaactttgcttTGCAATCTGCAACGTCTACAAGTTTGGACA
ACTGGCATGCATATGAACAGCCTCCCAGCTGAAAGTTTTTACTAATTATT
AATtactgttaagaattttcaataaagcatttactttcacgaaaaaagac
caaaatttgcgacgaaagtttctgctcgcgaaagtttgtacgtctaAAGT
AACTTCTCGCAAATTAGATTTCATctgttttgaacttttaaaatttcatt
ttcttttagtTCCTTTTTATGAGGAAAAGCTTTTTGGTAACGTGTGAATC
GGAAATATACACAAAAAAAGACTGGAATTAGAAGATATCACTTTATTTTT
GTTCACTTTTGAGTTTATTTTTGTCTTAGGCTTATATTCATGTTGTAATT
TAACGGTTTAACCTACtaataaatctaattttttatacatactaactaaa
ctaaaataatattattttaatttttataccGATTTATTCGTTTTAGAATT
TCCTAGATTTTTTCTATAGCTGTTTAGAAAGATATCTAGCTTTTTGTTGT
TTATGATAGCAATAATTTCTATTAATAACCCTAAaa Run BLAST on NCBI protein sequence of TCONS_00013213-protein >TCONS_00013213-protein ID=TCONS_00013213-protein|Name=TCONS_00013213-protein|organism=Clytia hemisphaerica|type=polypeptide|length=372bp
MELTSEACQKEIIERLEFLKVIKAHTQNEQIIAEENIELIKREIDQSVDF
HLENLQKRGAWLKLHAEHVYGLMQESLAQKQEQIEIGISSITSVLEDKDS
YRLSEEQACNEMKNILNTSWPSASENAVLTFSASNSALSESILAYGNIGT
TLKDESESFILAEDDDGIEIIPKEQNLFPRDSVSDWLLNKSSSPDEVSEV
AEKDSYSDWLVCSKNDPAFMKVEPSPWLLRECDTDSGHWSAFTTSTKSEQ
PIEYASFLIKNLQISKKDVIDDLDKDETDLNTFLHKSSSPSDSTQNYQYP
KRQFLEHWDFLNEQDSSKYLVAKKDIPAAKPKEEETCQWLYRKDVDECRQ
EKCTANGCDLFDKNWLRTASDW Run BLAST on NCBI transcript from alignment at sc0000163:398938..402147+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00013213 ID=TCONS_00013213|Name=TCONS_00013213|organism=Clytia hemisphaerica|type=transcript|length=3210bp|location=Sequence derived from alignment at sc0000163:398938..402147+ (Clytia hemisphaerica)
atttttaaaggaGAACCAAAATGGAACTCACTTCAGAGGCTtgtcaaaaa
gaaatcattgaaCGCTTGGAATTTTTGAAAGTTATAAAAGCACATACACA
GAATGAACAAATTATTGCAGAAGAGAATATTGAATTGATTAAAAGAGAAA
TCGACCAATCAGTAGATTTTCATCTTGAGAATTTGCAAAAGCGTGGAGCA
TGGTGAGTGTTTGCTGTATTTTGATCtgggggaaggggggggggtactta
ggcaaatgtgATTTCCCTAATGaggatatatatatatataatcaacaaat
attttatactAGGTATAGGACTGGGGgctgtttaaaaaaacttaatattt
ggggggacttaaatctttggggggaactattttttgcctgggacctagac
CTGGGCCGACCCTATGCTCAATCTATATCAATTTAATacttaaattcaaa
ataacattcACCTCTATAATACTATCAAAGTTTAAAGTTATTACTGACCG
TATTcactgtctcacagccctggttgAACTTTTCCCACAGTGTTGATGTa
catttctatcgaaatcctaATGAGGATAGAAGTTCTATAGTTCTAAACTC
GTATAATCACGTGGGGATGGTTTTAGGGTGCAGTCTTtcacattgaattt
caaatggggatgataACGAAGTGAATTTCCCAGTGGAGctaaaatttcag
ggtatttttcccactgtgaacaaaattttgaacaaattttccagtgaggt
GGGAGTCCTAGCAGGTTTGTGACAAGAGAGGGGGGTGTTTACTGCTTTTT
TCCTTGTTCAAAAACTTGGTTTTCCCTATCAGAATTCAGCATAATTGTAA
AAATCTAAATGAAAGGTTAAAACTTTAAACACTGTAAATCTAAACATATT
CTAAAGACAGTTTTGATTATAAATGCTTTCCCTTTTACGTTTAGGCTAAA
GCTACACGCAGAACACGTATACGGATTAATGCAAGAATCACTTGCTCAAA
AACAGGAACAAATCGAGATTGGTATCTCAAGCATAACAAGCGTCCTTGAA
GATAAAGATTCCTATAGATTATCGGAAGAGCAGGCTtgcaatgaaatgaa
aaacatccTTAATACAAGTTGGCCATCTGCAAGTGAAAATGGTAAGGGAC
TTTATACAAATTTTACTATCTTCAAGATAAGGAGTATCGTCCCAGGTCTT
TGCTGGCACTAAATCAATAAACTTAGGAGTTTCcaacattttatatttta
atttctatgaatcaatgttttcattttgtctGAAGAATACCGAAATTAGC
TATTGTTTCAATCCAAACTAAAGATATTACATAATaatgtactctcgggt
acctaataggcggggggttggaaaaagcaggggggttggaaaaaatctca
aaatttaataagcgggggggttggaNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
taaagggggggggggggggggttggaataagaatgtcctgggtggaaaat
tttcgaaaaattaattagcagggggggacggctattaggtacccgagagt
aattgttttttaaatcattttagcTGTCTTAACGTTTTCTGCAAGCAACA
GTGCTCTGAGCGAATCCATTTTGGCGTACGGTAACATCGGTACCACCTTG
AAAGATGAATCGGAAAGCTTTATCCTTGCTGAAGATGATGATGGAATCGA
AATTATACCCAAAGAACAAAATCTATTTCCAAGAGATTCTGTATCTGACT
GGTTGTTGAACAAGAGCTCATCTCCTGATGAAGTCTCTGAAGTTGCTGAA
AAGGATAGCTATTCTGATTGGTTAGTATGCAGTAAAAATGATCCAGCATT
CATGAAAGTTGAACCTTCACCGTGGCTTTTGCGGGAATGTGACACCGATT
CTGGTCACTGGTCAGCATTCACCACTTCGACCAAGTCAGAACAACCCATT
GAATATGCTTCCTTTCTCATCAAAAATCTTCAGATAAGCAAAAAAGATGT
AATTGACGATTTAGACAAGGATGAAACTGACTTGAACACATTTTTACACA
AATCCAGCAGTCCGTCTGATTCTACTCAAAATTACCAATATCCAAAACGC
CAATTCCTCGAGCATTGGGATTTCCTTAATGAGCAAGATTCATCAAAGTA
TCTCGTTGCAAAGAAAGATATCCCTGCTGCAAAGCCCAAAGAGGAGGAAA
CGTGCCAATGGTTGTATCGCAAAGATGTTGATGAATGTCGCCAAGAGAAA
TGTACTGCTAATGGTTGTGATTTGTTTGATAAGAATTGGTTGAGAACTGC
CAGTGATTGGTGATGGTTTATCCATGTTTAATTGGATTTGAGTGTGCTAT
ATAGAAACTGAGAGAGTTTTATATTGTTTATATGGAGGTGTAGATCTGGT
TAGGTGAGAGACAGtatgattttttgtcaaaaaaaactttgcttTGCAAT
CTGCAACGTCTACAAGTTTGGACAACTGGCATGCATATGAACAGCCTCCC
AGCTGAAAGTTTTTACTAATTATTAATtactgttaagaattttcaataaa
gcatttactttcacgaaaaaagaccaaaatttgcgacgaaagtttctgct
cgcgaaagtttgtacgtctaAAGTAACTTCTCGCAAATTAGATTTCATct
gttttgaacttttaaaatttcattttcttttagtTCCTTTTTATGAGGAA
AAGCTTTTTGGTAACGTGTGAATCGGAAATATACACAAAAAAAGACTGGA
ATTAGAAGATATCACTTTATTTTTGTTCACTTTTGAGTTTATTTTTGTCT
TAGGCTTATATTCATGTTGTAATTTAACGGTTTAACCTACtaataaatct
aattttttatacatactaactaaactaaaataatattattttaattttta
taccGATTTATTCGTTTTAGAATTTCCTAGATTTTTTCTATAGCTGTTTA
GAAAGATATCTAGCTTTTTGTTGTTTATGATAGCAATAATTTCTATTAAT
AACCCTAAaa Coding sequence (CDS) from alignment at sc0000163:398938..402147+ >TCONS_00013213 ID=TCONS_00013213|Name=TCONS_00013213|organism=Clytia hemisphaerica|type=CDS|length=3357bp|location=Sequence derived from alignment at sc0000163:398938..402147+ (Clytia hemisphaerica)
ATGGAACTCACTTCAGAGGCTtgtcaaaaagaaatcattgaaCGCTTGGA
ATTTTTGAAAGTTATAAAAGCACATACACAGAATGAACAAATTATTGCAG
AAGAGAATATTGAATTGATTAAAAGAGAAATCGACCAATCAGTAGATTTT
CATCTTGAGAATTTGCAAAAGCGTGGAGCATGGCTAAAGCTACACGCAGA
ACACGTATACGGATTAATGCAAGAATCACTTGCTCAAAAACAGGAACAAA
TCGAGATTGGTATCTCAAGCATAACAAGCGTCCTTGAAGATAAAGATTCC
TATAGATTATCGGAAGAGCAGGCTtgcaatgaaatgaaaaacatccTTAA
TACAAGTTGGCCATCTGCAAGTGAAAATGcTGTCTTAACGTTTTCTGCAA
GCAACAGTGCTCTGAGCGAATCCATTTTGGCGTACGGTAACATCGGTACC
ACCTTGAAAGATGAATCGGAAAGCTTTATCCTTGCTGAAGATGATGATGG
AATCGAAATTATACCCAAAGAACAAAATCTATTTCCAAGAGATTCTGTAT
CTGACTGGTTGTTGAACAAGAGCTCATCTCCTGATGAAGTCTCTGAAGTT
GCTGAAAAGGATAGCTATTCTGATTGGTTAGTATGCAGTAAAAATGATCC
AGCATTCATGAAAGTTGAACCTTCACCGTGGCTTTTGCGGGAATGTGACA
CCGATTCTGGTCACTGGTCAGCATTCACCACTTCGACCAAGTCAGAACAA
CCCATTGAATATGCTTCCTTTCTCATCAAAAATCTTCAGATAAGCAAAAA
AGATGTAATTGACGATTTAGACAAGGATGAAACTGACTTGAACACATTTT
TACACAAATCCAGCAGTCCGTCTGATTCTACTCAAAATTACCAATATCCA
AAACGCCAATTCCTCGAGCATTGGGATTTCCTTAATGAGCAAGATTCATC
AAAGTATCTCGTTGCAAAGAAAGATATCCCTGCTGCAAAGCCCAAAGAGG
AGGAAACGTGCCAATGGTTGTATCGCAAAGATGTTGATGAATGTCGCCAA
GAGAAATGTACTGCTAATGGTTGTGATTTGTTTGATAAGAATTGGTTGAG
AACTGCCAGTGATTGGTGAATGGAACTCACTTCAGAGGCTtgtcaaaaag
aaatcattgaaCGCTTGGAATTTTTGAAAGTTATAAAAGCACATACACAG
AATGAACAAATTATTGCAGAAGAGAATATTGAATTGATTAAAAGAGAAAT
CGACCAATCAGTAGATTTTCATCTTGAGAATTTGCAAAAGCGTGGAGCAT
GGCTAAAGCTACACGCAGAACACGTATACGGATTAATGCAAGAATCACTT
GCTCAAAAACAGGAACAAATCGAGATTGGTATCTCAAGCATAACAAGCGT
CCTTGAAGATAAAGATTCCTATAGATTATCGGAAGAGCAGGCTtgcaatg
aaatgaaaaacatccTTAATACAAGTTGGCCATCTGCAAGTGAAAATGcT
GTCTTAACGTTTTCTGCAAGCAACAGTGCTCTGAGCGAATCCATTTTGGC
GTACGGTAACATCGGTACCACCTTGAAAGATGAATCGGAAAGCTTTATCC
TTGCTGAAGATGATGATGGAATCGAAATTATACCCAAAGAACAAAATCTA
TTTCCAAGAGATTCTGTATCTGACTGGTTGTTGAACAAGAGCTCATCTCC
TGATGAAGTCTCTGAAGTTGCTGAAAAGGATAGCTATTCTGATTGGTTAG
TATGCAGTAAAAATGATCCAGCATTCATGAAAGTTGAACCTTCACCGTGG
CTTTTGCGGGAATGTGACACCGATTCTGGTCACTGGTCAGCATTCACCAC
TTCGACCAAGTCAGAACAACCCATTGAATATGCTTCCTTTCTCATCAAAA
ATCTTCAGATAAGCAAAAAAGATGTAATTGACGATTTAGACAAGGATGAA
ACTGACTTGAACACATTTTTACACAAATCCAGCAGTCCGTCTGATTCTAC
TCAAAATTACCAATATCCAAAACGCCAATTCCTCGAGCATTGGGATTTCC
TTAATGAGCAAGATTCATCAAAGTATCTCGTTGCAAAGAAAGATATCCCT
GCTGCAAAGCCCAAAGAGGAGGAAACGTGCCAATGGTTGTATCGCAAAGA
TGTTGATGAATGTCGCCAAGAGAAATGTACTGCTAATGGTTGTGATTTGT
TTGATAAGAATTGGTTGAGAACTGCCAGTGATTGGTGAATGGAACTCACT
TCAGAGGCTtgtcaaaaagaaatcattgaaCGCTTGGAATTTTTGAAAGT
TATAAAAGCACATACACAGAATGAACAAATTATTGCAGAAGAGAATATTG
AATTGATTAAAAGAGAAATCGACCAATCAGTAGATTTTCATCTTGAGAAT
TTGCAAAAGCGTGGAGCATGGCTAAAGCTACACGCAGAACACGTATACGG
ATTAATGCAAGAATCACTTGCTCAAAAACAGGAACAAATCGAGATTGGTA
TCTCAAGCATAACAAGCGTCCTTGAAGATAAAGATTCCTATAGATTATCG
GAAGAGCAGGCTtgcaatgaaatgaaaaacatccTTAATACAAGTTGGCC
ATCTGCAAGTGAAAATGcTGTCTTAACGTTTTCTGCAAGCAACAGTGCTC
TGAGCGAATCCATTTTGGCGTACGGTAACATCGGTACCACCTTGAAAGAT
GAATCGGAAAGCTTTATCCTTGCTGAAGATGATGATGGAATCGAAATTAT
ACCCAAAGAACAAAATCTATTTCCAAGAGATTCTGTATCTGACTGGTTGT
TGAACAAGAGCTCATCTCCTGATGAAGTCTCTGAAGTTGCTGAAAAGGAT
AGCTATTCTGATTGGTTAGTATGCAGTAAAAATGATCCAGCATTCATGAA
AGTTGAACCTTCACCGTGGCTTTTGCGGGAATGTGACACCGATTCTGGTC
ACTGGTCAGCATTCACCACTTCGACCAAGTCAGAACAACCCATTGAATAT
GCTTCCTTTCTCATCAAAAATCTTCAGATAAGCAAAAAAGATGTAATTGA
CGATTTAGACAAGGATGAAACTGACTTGAACACATTTTTACACAAATCCA
GCAGTCCGTCTGATTCTACTCAAAATTACCAATATCCAAAACGCCAATTC
CTCGAGCATTGGGATTTCCTTAATGAGCAAGATTCATCAAAGTATCTCGT
TGCAAAGAAAGATATCCCTGCTGCAAAGCCCAAAGAGGAGGAAACGTGCC
AATGGTTGTATCGCAAAGATGTTGATGAATGTCGCCAAGAGAAATGTACT
GCTAATGGTTGTGATTTGTTTGATAAGAATTGGTTGAGAACTGCCAGTGA
TTGGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00013213-exon-sc0000163-1491911889:398938..399139 | TCONS_00013213-exon-sc0000163-1491911889:398938..399139 | Clytia hemisphaerica | exon |
| TCONS_00013213-exon-sc0000163-1510915933:398938..399139 | TCONS_00013213-exon-sc0000163-1510915933:398938..399139 | Clytia hemisphaerica | exon |
| TCONS_00013213-exon-sc0000163-1575043694:398938..399139 | TCONS_00013213-exon-sc0000163-1575043694:398938..399139 | Clytia hemisphaerica | exon |
| TCONS_00013213-exon-sc0000163-1491911889:399882..400078 | TCONS_00013213-exon-sc0000163-1491911889:399882..400078 | Clytia hemisphaerica | exon |
| TCONS_00013213-exon-sc0000163-1510915933:399882..400078 | TCONS_00013213-exon-sc0000163-1510915933:399882..400078 | Clytia hemisphaerica | exon |
| TCONS_00013213-exon-sc0000163-1575043694:399882..400078 | TCONS_00013213-exon-sc0000163-1575043694:399882..400078 | Clytia hemisphaerica | exon |
| TCONS_00013213-exon-sc0000163-1491911889:400711..402147 | TCONS_00013213-exon-sc0000163-1491911889:400711..402147 | Clytia hemisphaerica | exon |
| TCONS_00013213-exon-sc0000163-1510915933:400711..402147 | TCONS_00013213-exon-sc0000163-1510915933:400711..402147 | Clytia hemisphaerica | exon |
| TCONS_00013213-exon-sc0000163-1575043694:400711..402147 | TCONS_00013213-exon-sc0000163-1575043694:400711..402147 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000163 | supercontig | sc0000163:398938..402147 + |
Blast
The following BLAST results are available for this feature:
|
