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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013202 ID=TCONS_00013202|Name=TCONS_00013202|organism=Clytia hemisphaerica|type=transcript|length=1561bp
AGGTTGAACAAGAGCTTCAAACTATCGTCACCACCCACGAGACCGACAAT
CAAGAGCGATACAAACGATTACAAATCGAGTTACAGCAAGAACGCGAAAC
ATCACATAAACAAATCTACGAAAAATCGACTGAAATCGAACAACTCCGGA
TTACAATGTCAAGCTCTGAACAAGAGATCAAACGCTTGAGACGTGAGATT
GAATCCCTGGAAGCGAAGTTGAAAGCACAGCAAGCTCCTTCCCATTCCTC
TTCATTGATTTTGACCACTAAACAACACTCTGAACAATTAGTTGTCCCAA
GCAAGACATCTGAAGCAAAAATCACCGTCTCACCAAGACATAAGTCTGAA
ACAAACGTGATCATCGAAAGTGATCAAGCGCGTGCAGAACGCGAGAAGCC
ATATTCGTCCTCTTTCTACCGCTCGACCGCCAAAGTGAACACGCAACCAC
AAGAGTTTGGAAGCGTCGATCTTGTGTTGAAAGATGTTCCTACACACACT
CAAGAACAAATCGAAGTCAAGAAGCAATCCAGATACGACTACCGTAGTGG
AAGCTCAACAGCATCCAATGAACGCCACGTCAGTTCCACAAGCATCCGTA
CCGGAGCTGAAAAAACACCGGAATATCAAGAATACGAGATTACCGTTGAA
CCAGAACAACAACGTCGCGGAAAATCCGAATATTTGATGAGAGTCGGTGG
TCCTTCCGGTAGATCATCCGGAGCTTCAAGCCCCGTACCCGGAGCAGGAT
CCCAATCATCTGGTATCCAAATGCGTGTCGGTGGCGGATCGACTAGCGAT
TTAACCACCCCGAGCCCATCCCGAGGCGTGTCCGAATACCAAATGCGTGT
CGGTGGTGGATCAACTAGTGATTTAACTAGCCCAAGCCCGAGCCGAGGCG
TATCCGAATATCAAATGCGTGTTGGTAGTGGAGCAACACAAACGACAACG
GTTGAAGAAACTGTTTCAACCACGGTCGAGAGACGTCGCGCCGGACATGC
TACGCAACAGGTACAACAACAAAGTTATACTGAAGATGAAGAGCTTCAAC
GCATcttaagaaacaaaaataagaGAAAAGGAAAACGTATGGAAGAATTT
CACTCAAGCTCTTAAAGAAAACTATATGATGtgacaatttaataaaaaca
ttttttgggaaattttatttaattttgaaatttttatttatttagtatTT
AAATAAATGTTATTTGTAAgggtttattttgacaaaagtaTAACTTGGCT
CgcttcaaaaaaaagttttaaaaacttgAATCCCGCCTATCTAGAAGCCG
ATTTTGTCGAGCTCAGTTATATTTTATGGAcaataattatttaaaaagtt
aatttatttaaaatatatGTAAAATTTTATGTGGGTAGTGGTTTTAAGAA
ACTTCCAATTTTTTAGTTATTTCTTCAAAAGAATTTTGGTTCGtaaaatt
ttcatgaatttaaTTGATTTAGGACGCATTTTAATGATAGcattttgaaa
ttgtattttgcaaaatttttattgaattttgttaactttttatgATTGTG
AAATAGaccac Run BLAST on NCBI protein sequence of TCONS_00013202-protein >TCONS_00013202-protein ID=TCONS_00013202-protein|Name=TCONS_00013202-protein|organism=Clytia hemisphaerica|type=polypeptide|length=370bp
VEQELQTIVTTHETDNQERYKRLQIELQQERETSHKQIYEKSTEIEQLRI
TMSSSEQEIKRLRREIESLEAKLKAQQAPSHSSSLILTTKQHSEQLVVPS
KTSEAKITVSPRHKSETNVIIESDQARAEREKPYSSSFYRSTAKVNTQPQ
EFGSVDLVLKDVPTHTQEQIEVKKQSRYDYRSGSSTASNERHVSSTSIRT
GAEKTPEYQEYEITVEPEQQRRGKSEYLMRVGGPSGRSSGASSPVPGAGS
QSSGIQMRVGGGSTSDLTTPSPSRGVSEYQMRVGGGSTSDLTSPSPSRGV
SEYQMRVGSGATQTTTVEETVSTTVERRRAGHATQQVQQQSYTEDEELQR
ILRNKNKRKGKRMEEFHSSS Run BLAST on NCBI transcript from alignment at sc0000163:258651..261210+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00013202 ID=TCONS_00013202|Name=TCONS_00013202|organism=Clytia hemisphaerica|type=transcript|length=2560bp|location=Sequence derived from alignment at sc0000163:258651..261210+ (Clytia hemisphaerica)
AGGTTGAACAAGAGCTTCAAACTATCGTCACCACCCACGAGACCGACAAT
CAAGAGCGATACAAACGATTACAAATCGAGTTACAGCAAGAACGCGAAAC
ATCACATAAACAAATCTACGAAAAATCGACTGAAATCGAACAACTCCGGA
TTACAATGTCAAGCTCTGAACAAGAGATCAAACGCTTGAGACGTGAGATT
GAATCCCTGGAAGCGAAGTTGAAAGCACAGCAAGCTCCTTCCCATTCCTC
TTCATTGATTTTGACCACTAAACAACACTCTGAACAATTAGTTGTCCCAA
GCAAGAGTAAGTATCAAAATTAGACAGGGGCTTGGGTACTAGGTTTGGGT
GTGGCGTTCCTCTTCTTTGAACAAGCAAAAGCAAGTACCCTATTGCCATG
TACCAGAATCAATCAGTACACGGAAAACTCTTCAAATTGGAAAAAACTGC
TCATATGATTTTCTCATtttatgaatttaaaaaaatagcaaagtggtTTA
TAGTTATACATACCTTTAATTAATTTCATTGTTAATTGCGCCTAGGGGTG
TGAGTTTGTTTGTGGACCctgaaaaataataaacaaagttaaaattGCAA
GAGTTTCAATGAGCTGTTTCAGCCTAGCGATATATTAACCTAATTTTGAA
CTcttttctctcttttgtcttagCATCTGAAGCAAAAATCACCGTCTCAC
CAAGACATAAGTCTGAAACAAACGTGATCATCGAAAGTGATCAAGCGCGT
GCAGAACGCGAGAAGCCATATTCGTCCTCTTTCTACCGCTCGACCGCCAA
AGTGAACACGCAACCACAAGAGTTTGGAAGCGTCGATCTTGTGTTGAAAG
ATGTTCCTACACACACTCAAGAACAAATCGAAGTCAAGAAGCAATCCAGG
TAATACAAAATGAAATACAGTAAACTctatctctctaattcgaacctttc
ttattcgaatctttctgtaatttgaactaaaatattggttccTTCGCCTG
GAAAATGGTTTAAATTACTCACTGTAATTTAAATCTCTTTTTAATTCGAG
CAACATTTTTTGCTcccatgaagatcgaattaaaaAGAGTCAACTATAGG
CAATTGCTTGCTTTAAGAAGGCTTTGAAGTAAAGAGAGTAAacaataaaa
caacaaaaaggcGAGATTGAGTCGAGAGACCCCAGTCCACTTTTGAAAGT
AGTCAAACAAAACATTGCAgtcttttaaaaatgttattcgTTAACGACTC
CGTTTCTTAACGGACTAATACACCTGGACCTGTCTTAATTTTATAGTACA
TCAAAATAGTCAAAAAGTTTCATATGCAACTTGCTAGAAAGTGTCATTCT
TACATACCGGGTGGGTAAAAAAACGCccctattttgaaatctttgtgGTA
CATTTTCTATTCAGTTGAGCCGCTTGAATTCTTTTGTGAGTATTGTAAAT
TTAAAGATTTGGATTCAATTACAActtgaaatattcaaataatatatatt
ttcctaATCTTTAATCTCATAATTTCTCTAGATACGACTACCGTAGTGGA
AGCTCAACAGCATCCAATGAACGCCACGTCAGTTCCACAAGCATCCGTAC
CGGAGCTGAAAAAACACCGGAATATCAAGAATACGAGATTACCGTTGAAC
CAGAACAACAACGTCGCGGAAAATCCGAATATTTGATGAGAGTCGGTGGT
CCTTCCGGTAGATCATCCGGAGCTTCAAGCCCCGTACCCGGAGCAGGATC
CCAATCATCTGGTATCCAAATGCGTGTCGGTGGCGGATCGACTAGCGATT
TAACCACCCCGAGCCCATCCCGAGGCGTGTCCGAATACCAAATGCGTGTC
GGTGGTGGATCAACTAGTGATTTAACTAGCCCAAGCCCGAGCCGAGGCGT
ATCCGAATATCAAATGCGTGTTGGTAGTGGAGCAACACAAACGACAACGG
TTGAAGAAACTGTTTCAACCACGGTCGAGAGACGTCGCGCCGGACATGCT
ACGCAACAGGTACAACAACAAAGTTATACTGAAGATGAAGAGCTTCAACG
CATcttaagaaacaaaaataagaGAAAAGGAAAACGTATGGAAGAATTTC
ACTCAAGCTCTTAAAGAAAACTATATGATGtgacaatttaataaaaacat
tttttgggaaattttatttaattttgaaatttttatttatttagtatTTA
AATAAATGTTATTTGTAAgggtttattttgacaaaagtaTAACTTGGCTC
gcttcaaaaaaaagttttaaaaacttgAATCCCGCCTATCTAGAAGCCGA
TTTTGTCGAGCTCAGTTATATTTTATGGAcaataattatttaaaaagtta
atttatttaaaatatatGTAAAATTTTATGTGGGTAGTGGTTTTAAGAAA
CTTCCAATTTTTTAGTTATTTCTTCAAAAGAATTTTGGTTCGtaaaattt
tcatgaatttaaTTGATTTAGGACGCATTTTAATGATAGcattttgaaat
tgtattttgcaaaatttttattgaattttgttaactttttatgATTGTGA
AATAGaccac Coding sequence (CDS) from alignment at sc0000163:258651..261210+ >TCONS_00013202 ID=TCONS_00013202|Name=TCONS_00013202|organism=Clytia hemisphaerica|type=CDS|length=3339bp|location=Sequence derived from alignment at sc0000163:258651..261210+ (Clytia hemisphaerica)
GTTGAACAAGAGCTTCAAACTATCGTCACCACCCACGAGACCGACAATCA
AGAGCGATACAAACGATTACAAATCGAGTTACAGCAAGAACGCGAAACAT
CACATAAACAAATCTACGAAAAATCGACTGAAATCGAACAACTCCGGATT
ACAATGTCAAGCTCTGAACAAGAGATCAAACGCTTGAGACGTGAGATTGA
ATCCCTGGAAGCGAAGTTGAAAGCACAGCAAGCTCCTTCCCATTCCTCTT
CATTGATTTTGACCACTAAACAACACTCTGAACAATTAGTTGTCCCAAGC
AAGACATCTGAAGCAAAAATCACCGTCTCACCAAGACATAAGTCTGAAAC
AAACGTGATCATCGAAAGTGATCAAGCGCGTGCAGAACGCGAGAAGCCAT
ATTCGTCCTCTTTCTACCGCTCGACCGCCAAAGTGAACACGCAACCACAA
GAGTTTGGAAGCGTCGATCTTGTGTTGAAAGATGTTCCTACACACACTCA
AGAACAAATCGAAGTCAAGAAGCAATCCAGATACGACTACCGTAGTGGAA
GCTCAACAGCATCCAATGAACGCCACGTCAGTTCCACAAGCATCCGTACC
GGAGCTGAAAAAACACCGGAATATCAAGAATACGAGATTACCGTTGAACC
AGAACAACAACGTCGCGGAAAATCCGAATATTTGATGAGAGTCGGTGGTC
CTTCCGGTAGATCATCCGGAGCTTCAAGCCCCGTACCCGGAGCAGGATCC
CAATCATCTGGTATCCAAATGCGTGTCGGTGGCGGATCGACTAGCGATTT
AACCACCCCGAGCCCATCCCGAGGCGTGTCCGAATACCAAATGCGTGTCG
GTGGTGGATCAACTAGTGATTTAACTAGCCCAAGCCCGAGCCGAGGCGTA
TCCGAATATCAAATGCGTGTTGGTAGTGGAGCAACACAAACGACAACGGT
TGAAGAAACTGTTTCAACCACGGTCGAGAGACGTCGCGCCGGACATGCTA
CGCAACAGGTACAACAACAAAGTTATACTGAAGATGAAGAGCTTCAACGC
ATcttaagaaacaaaaataagaGAAAAGGAAAACGTATGGAAGAATTTCA
CTCAAGCTCTTAAGTTGAACAAGAGCTTCAAACTATCGTCACCACCCACG
AGACCGACAATCAAGAGCGATACAAACGATTACAAATCGAGTTACAGCAA
GAACGCGAAACATCACATAAACAAATCTACGAAAAATCGACTGAAATCGA
ACAACTCCGGATTACAATGTCAAGCTCTGAACAAGAGATCAAACGCTTGA
GACGTGAGATTGAATCCCTGGAAGCGAAGTTGAAAGCACAGCAAGCTCCT
TCCCATTCCTCTTCATTGATTTTGACCACTAAACAACACTCTGAACAATT
AGTTGTCCCAAGCAAGACATCTGAAGCAAAAATCACCGTCTCACCAAGAC
ATAAGTCTGAAACAAACGTGATCATCGAAAGTGATCAAGCGCGTGCAGAA
CGCGAGAAGCCATATTCGTCCTCTTTCTACCGCTCGACCGCCAAAGTGAA
CACGCAACCACAAGAGTTTGGAAGCGTCGATCTTGTGTTGAAAGATGTTC
CTACACACACTCAAGAACAAATCGAAGTCAAGAAGCAATCCAGATACGAC
TACCGTAGTGGAAGCTCAACAGCATCCAATGAACGCCACGTCAGTTCCAC
AAGCATCCGTACCGGAGCTGAAAAAACACCGGAATATCAAGAATACGAGA
TTACCGTTGAACCAGAACAACAACGTCGCGGAAAATCCGAATATTTGATG
AGAGTCGGTGGTCCTTCCGGTAGATCATCCGGAGCTTCAAGCCCCGTACC
CGGAGCAGGATCCCAATCATCTGGTATCCAAATGCGTGTCGGTGGCGGAT
CGACTAGCGATTTAACCACCCCGAGCCCATCCCGAGGCGTGTCCGAATAC
CAAATGCGTGTCGGTGGTGGATCAACTAGTGATTTAACTAGCCCAAGCCC
GAGCCGAGGCGTATCCGAATATCAAATGCGTGTTGGTAGTGGAGCAACAC
AAACGACAACGGTTGAAGAAACTGTTTCAACCACGGTCGAGAGACGTCGC
GCCGGACATGCTACGCAACAGGTACAACAACAAAGTTATACTGAAGATGA
AGAGCTTCAACGCATcttaagaaacaaaaataagaGAAAAGGAAAACGTA
TGGAAGAATTTCACTCAAGCTCTTAAGTTGAACAAGAGCTTCAAACTATC
GTCACCACCCACGAGACCGACAATCAAGAGCGATACAAACGATTACAAAT
CGAGTTACAGCAAGAACGCGAAACATCACATAAACAAATCTACGAAAAAT
CGACTGAAATCGAACAACTCCGGATTACAATGTCAAGCTCTGAACAAGAG
ATCAAACGCTTGAGACGTGAGATTGAATCCCTGGAAGCGAAGTTGAAAGC
ACAGCAAGCTCCTTCCCATTCCTCTTCATTGATTTTGACCACTAAACAAC
ACTCTGAACAATTAGTTGTCCCAAGCAAGACATCTGAAGCAAAAATCACC
GTCTCACCAAGACATAAGTCTGAAACAAACGTGATCATCGAAAGTGATCA
AGCGCGTGCAGAACGCGAGAAGCCATATTCGTCCTCTTTCTACCGCTCGA
CCGCCAAAGTGAACACGCAACCACAAGAGTTTGGAAGCGTCGATCTTGTG
TTGAAAGATGTTCCTACACACACTCAAGAACAAATCGAAGTCAAGAAGCA
ATCCAGATACGACTACCGTAGTGGAAGCTCAACAGCATCCAATGAACGCC
ACGTCAGTTCCACAAGCATCCGTACCGGAGCTGAAAAAACACCGGAATAT
CAAGAATACGAGATTACCGTTGAACCAGAACAACAACGTCGCGGAAAATC
CGAATATTTGATGAGAGTCGGTGGTCCTTCCGGTAGATCATCCGGAGCTT
CAAGCCCCGTACCCGGAGCAGGATCCCAATCATCTGGTATCCAAATGCGT
GTCGGTGGCGGATCGACTAGCGATTTAACCACCCCGAGCCCATCCCGAGG
CGTGTCCGAATACCAAATGCGTGTCGGTGGTGGATCAACTAGTGATTTAA
CTAGCCCAAGCCCGAGCCGAGGCGTATCCGAATATCAAATGCGTGTTGGT
AGTGGAGCAACACAAACGACAACGGTTGAAGAAACTGTTTCAACCACGGT
CGAGAGACGTCGCGCCGGACATGCTACGCAACAGGTACAACAACAAAGTT
ATACTGAAGATGAAGAGCTTCAACGCATcttaagaaacaaaaataagaGA
AAAGGAAAACGTATGGAAGAATTTCACTCAAGCTCTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00013202-exon-sc0000163-1491911889:258651..258956 | TCONS_00013202-exon-sc0000163-1491911889:258651..258956 | Clytia hemisphaerica | exon |
| TCONS_00013202-exon-sc0000163-1510915933:258651..258956 | TCONS_00013202-exon-sc0000163-1510915933:258651..258956 | Clytia hemisphaerica | exon |
| TCONS_00013202-exon-sc0000163-1575043694:258651..258956 | TCONS_00013202-exon-sc0000163-1575043694:258651..258956 | Clytia hemisphaerica | exon |
| TCONS_00013202-exon-sc0000163-1491911889:259324..259549 | TCONS_00013202-exon-sc0000163-1491911889:259324..259549 | Clytia hemisphaerica | exon |
| TCONS_00013202-exon-sc0000163-1510915933:259324..259549 | TCONS_00013202-exon-sc0000163-1510915933:259324..259549 | Clytia hemisphaerica | exon |
| TCONS_00013202-exon-sc0000163-1575043694:259324..259549 | TCONS_00013202-exon-sc0000163-1575043694:259324..259549 | Clytia hemisphaerica | exon |
| TCONS_00013202-exon-sc0000163-1491911889:260182..261210 | TCONS_00013202-exon-sc0000163-1491911889:260182..261210 | Clytia hemisphaerica | exon |
| TCONS_00013202-exon-sc0000163-1510915933:260182..261210 | TCONS_00013202-exon-sc0000163-1510915933:260182..261210 | Clytia hemisphaerica | exon |
| TCONS_00013202-exon-sc0000163-1575043694:260182..261210 | TCONS_00013202-exon-sc0000163-1575043694:260182..261210 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000163 | supercontig | sc0000163:258651..261210 + |
Blast
The following BLAST results are available for this feature:
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