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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013199 ID=TCONS_00013199|Name=TCONS_00013199|organism=Clytia hemisphaerica|type=transcript|length=1008bp
TTTTCCTTTAAATtcctttttgttaatttcttcTCAATTAATGTAAGtgc
aaaaacaactaaaaataagaaagaaaacttaaaactaaacaaataaatat
attcaagagaaaaaatatgaaaaaataaaaacaaactggtAGCATCGAAC
AGAAAATCTTCATTTAAATTTTGACACAGAATAGCACTTGGACGAGCGAC
GCAGATAGATATATCTAATGGTTGTTAAAGGTACCTAAACTTTATTACAT
TTTGATGAAACCTtattaaataataataaatttCGAGACGAAGacgagca
aaaaaaattagtagACTAAAATAAATGTCGTGAATGAACGATGAAAAATT
CATGTTTTATAATAATATATAGTCATAGCTACCAACAAACCAACCAACCG
ACCAAAGGACCAAGTATCTATAATTTTGATGTCCTTGTTGTTATTATCCA
TGCTGAAAGAAATGACTTTCAAATTCATTTGTTCTTTAAAActgatttca
gatttttttttgcaatattttccTGACATCAGCATTCCCCTACTCGGTGC
CGTAAAACTTTTCGGAGTAAAGAGAACTCTTCACCCAGTATTTGTCGAAT
CGAataacacccaaaaaaacaaaacacgtGGCCAAGCAATTTCTCCTTCC
TATCTctcatttgtattttttgataattttttttgaagtacTGATACGTG
TGAAAATGAACACCCactatttttaaaaaaactttttttcggtCATCATC
GAGCTCTGTACAATAAGGATAAAATAATGGGCACTGGAACGTAGTGTTTT
GATTATGGGTGGTgattttgttttgcttgttgTGTTTACATTGTCAAATG
GGCGTAAAAAGATGGTAAAGGCGTATCTCAACGCCCACCACCAGATTCAG
GGTTTCGTGGCGGCATTCTCTCGTTCACACGATCAAGTGTCTTAGCATCG
GCAAAGCCCTGGATTTTGTTTTTATGACCACTGTCCATTGATAAATCGGA
AAGAGCTG Run BLAST on NCBI transcript from alignment at sc0000163:15312..17063+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00013199 ID=TCONS_00013199|Name=TCONS_00013199|organism=Clytia hemisphaerica|type=transcript|length=1752bp|location=Sequence derived from alignment at sc0000163:15312..17063+ (Clytia hemisphaerica)
TTTTCCTTTAAATtcctttttgttaatttcttcTCAATTAATGTAAGtgc
aaaaacaactaaaaataagaaagaaaacttaaaactaaacaaataaatat
attcaagagaaaaaatatgaaaaaataaaaacaaactggtAGCATCGAAC
AGAAAATCTTCATTTAAATTTTGACACAGAATAGCACTTGGACGAGCGAC
GCAGATAGATATATCCCATTTTTAAATAGCGTTTATCCCATTAATTTTGA
AATAGGGAAGAGAGAATCGATTCTTTACATGTAAAGTTAGGCAATatgaa
atgaagattttttggaACTACTTTCTGACTTGATAAGGAAATAGACATTG
ATAATGATAGTTAAAACTAAGTAATTATGGAATTgataaaattaaaatca
taaaCTCGTTTGATTCTGAGAGtccttttttttgcataataaaTAGTTAA
ACTTTTACACTTGAAGGTAGAGAAAAAACATACtagaaaaaaagattatt
ttcgTAAATTATTTTATACAATTAACTCTCCAAACTGTAGTAGAGGTTGT
ATAATGTAGAACATCAAAACTTCAAATTTGGTGAGCACAATTTAACGATT
CTAACCCAAACAATAGCCTGTTGTTTTAGTCAGTGTTATTAGCAGCCctt
aagtctgaaaatcaagacataaattttcaagcaaaaaaacctaattttca
aagaattcacCATTCATGATATTGTTCTTAAGAATTTTCTCATAAAAACT
ACTCCCGGTGGAATACTATTCACAAAAGATTTAGAAATTTGAGCTACATA
AAAACCTAAACTGGATTCAAAACAAAGTTGGAAGTTTTATGGAAGTATAT
GATAACGTGTGAAATATGAATTAAATTGTTAAAAACTAATTAAAGTATTA
AATCAATCGAGCGAGGCCAGTTAATTGCTATATTTTTTGGGCATATCTAT
ACATATATCTAATGGTTGTTAAAGGTACCTAAACTTTATTACATTTTGAT
GAAACCTtattaaataataataaatttCGAGACGAAGacgagcaaaaaaa
attagtagACTAAAATAAATGTCGTGAATGAACGATGAAAAATTCATGTT
TTATAATAATATATAGTCATAGCTACCAACAAACCAACCAACCGACCAAA
GGACCAAGTATCTATAATTTTGATGTCCTTGTTGTTATTATCCATGCTGA
AAGAAATGACTTTCAAATTCATTTGTTCTTTAAAActgatttcagatttt
tttttgcaatattttccTGACATCAGCATTCCCCTACTCGGTGCCGTAAA
ACTTTTCGGAGTAAAGAGAACTCTTCACCCAGTATTTGTCGAATCGAata
acacccaaaaaaacaaaacacgtGGCCAAGCAATTTCTCCTTCCTATCTc
tcatttgtattttttgataattttttttgaagtacTGATACGTGTGAAAA
TGAACACCCactatttttaaaaaaactttttttcggtCATCATCGAGCTC
TGTACAATAAGGATAAAATAATGGGCACTGGAACGTAGTGTTTTGATTAT
GGGTGGTgattttgttttgcttgttgTGTTTACATTGTCAAATGGGCGTA
AAAAGATGGTAAAGGCGTATCTCAACGCCCACCACCAGATTCAGGGTTTC
GTGGCGGCATTCTCTCGTTCACACGATCAAGTGTCTTAGCATCGGCAAAG
CCCTGGATTTTGTTTTTATGACCACTGTCCATTGATAAATCGGAAAGAGC
TG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00013199-exon-sc0000163-1491911889:15312..15519 | TCONS_00013199-exon-sc0000163-1491911889:15312..15519 | Clytia hemisphaerica | exon |
| TCONS_00013199-exon-sc0000163-1510915933:15312..15519 | TCONS_00013199-exon-sc0000163-1510915933:15312..15519 | Clytia hemisphaerica | exon |
| TCONS_00013199-exon-sc0000163-1575043694:15312..15519 | TCONS_00013199-exon-sc0000163-1575043694:15312..15519 | Clytia hemisphaerica | exon |
| TCONS_00013199-exon-sc0000163-1491911889:16264..17063 | TCONS_00013199-exon-sc0000163-1491911889:16264..17063 | Clytia hemisphaerica | exon |
| TCONS_00013199-exon-sc0000163-1510915933:16264..17063 | TCONS_00013199-exon-sc0000163-1510915933:16264..17063 | Clytia hemisphaerica | exon |
| TCONS_00013199-exon-sc0000163-1575043694:16264..17063 | TCONS_00013199-exon-sc0000163-1575043694:16264..17063 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000163 | supercontig | sc0000163:15312..17063 + |
Blast
The following BLAST results are available for this feature:
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