TCONS_00013191 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013191
Unique NameTCONS_00013191
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length521

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013191 ID=TCONS_00013191|Name=TCONS_00013191|organism=Clytia hemisphaerica|type=transcript|length=521bp
TCCTGAAGGgttctttttcctctttttctgGGGAGTTTCAAGCTTATTCT
CACACTTGTGTTTGTCAAAATACCACTTTCGAACATACATTTTTCCACAA
GCTGAACAAATATATTGCACCACTTCCTTTTGATTTTGCTTTGAAGATGC
AGGTTGATCATCAGTTTGTGCATCTCTACTGTCATCAGCTTTCTGCTTCT
CTTGTTCTTCATCACATACAACTGCTGGATGAGTGTTTGGTATCTTGATC
TTGATATTGTCAAAGTCAATACTCTCTAAATCAGCTTCGAGAATATCGTT
CGGAATCAAAACTTcattactttcgttttgatttcCTCCACAGTAAGCTT
CTATCACAATTGGTATAGTTTCATCAATATCAAAATCATATAGAATATCA
CATAGTTCTTTTTCATCAGCcatcttttttttatatatttctactCTCCA
CTTCACGTTTTTTTGTTAcccatcttgttttcaatatctctactcaaatt
tgttttgaaaaccaaatttGT
Run BLAST on NCBI

protein sequence of TCONS_00013191-protein

>TCONS_00013191-protein ID=TCONS_00013191-protein|Name=TCONS_00013191-protein|organism=Clytia hemisphaerica|type=polypeptide|length=141bp
MADEKELCDILYDFDIDETIPIVIEAYCGGNQNESNEVLIPNDILEADLE
SIDFDNIKIKIPNTHPAVVCDEEQEKQKADDSRDAQTDDQPASSKQNQKE
VVQYICSACGKMYVRKWYFDKHKCENKLETPQKKRKKNPSG
Run BLAST on NCBI

transcript from alignment at sc0000162:389689..390209

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013191 ID=TCONS_00013191|Name=TCONS_00013191|organism=Clytia hemisphaerica|type=transcript|length=521bp|location=Sequence derived from alignment at sc0000162:389689..390209 (Clytia hemisphaerica)
ACaaatttggttttcaaaacaaatttgagtagagatattgaaaacaagat
gggTAACAAAAAAACGTGAAGTGGAGagtagaaatatataaaaaaaagat
gGCTGATGAAAAAGAACTATGTGATATTCTATATGATTTTGATATTGATG
AAACTATACCAATTGTGATAGAAGCTTACTGTGGAGgaaatcaaaacgaa
agtaatgAAGTTTTGATTCCGAACGATATTCTCGAAGCTGATTTAGAGAG
TATTGACTTTGACAATATCAAGATCAAGATACCAAACACTCATCCAGCAG
TTGTATGTGATGAAGAACAAGAGAAGCAGAAAGCTGATGACAGTAGAGAT
GCACAAACTGATGATCAACCTGCATCTTCAAAGCAAAATCAAAAGGAAGT
GGTGCAATATATTTGTTCAGCTTGTGGAAAAATGTATGTTCGAAAGTGGT
ATTTTGACAAACACAAGTGTGAGAATAAGCTTGAAACTCCCcagaaaaag
aggaaaaagaacCCTTCAGGA

Coding sequence (CDS) from alignment at sc0000162:389689..390209

>TCONS_00013191 ID=TCONS_00013191|Name=TCONS_00013191|organism=Clytia hemisphaerica|type=CDS|length=423bp|location=Sequence derived from alignment at sc0000162:389689..390209 (Clytia hemisphaerica)
atgGCTGATGAAAAAGAACTATGTGATATTCTATATGATTTTGATATTGA
TGAAACTATACCAATTGTGATAGAAGCTTACTGTGGAGgaaatcaaaacg
aaagtaatgAAGTTTTGATTCCGAACGATATTCTCGAAGCTGATTTAGAG
AGTATTGACTTTGACAATATCAAGATCAAGATACCAAACACTCATCCAGC
AGTTGTATGTGATGAAGAACAAGAGAAGCAGAAAGCTGATGACAGTAGAG
ATGCACAAACTGATGATCAACCTGCATCTTCAAAGCAAAATCAAAAGGAA
GTGGTGCAATATATTTGTTCAGCTTGTGGAAAAATGTATGTTCGAAAGTG
GTATTTTGACAAACACAAGTGTGAGAATAAGCTTGAAACTCCCcagaaaa
agaggaaaaagaacCCTTCAGGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007372XLOC_007372Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013191-exon-sc0000162-1491911889:389689..390209TCONS_00013191-exon-sc0000162-1491911889:389689..390209Clytia hemisphaericaexon
TCONS_00013191-exon-sc0000162-1510915933:389689..390209TCONS_00013191-exon-sc0000162-1510915933:389689..390209Clytia hemisphaericaexon
TCONS_00013191-exon-sc0000162-1575043694:389689..390209TCONS_00013191-exon-sc0000162-1575043694:389689..390209Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013191-proteinTCONS_00013191-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000162supercontigsc0000162:389689..390209 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.341132	0.221772	0.257498	0.251922	2.30018	1.93881	1.16954	1.9161	0.383287	1.18691	0.115204	0.151461	0.378127	0.471226	0	0.0692921	1.28043	0.262481	0	0.379467	0.109942	0.160878	0.260757	0.237066	0	0	0.15592	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00013191 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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